data_8HIN # _model_server_result.job_id 8ppLTJIwEIoBB4Y0t7KBcw _model_server_result.datetime_utc '2024-11-22 18:42:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 8HIN # _exptl.entry_id 8HIN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 436.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[2-[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,6-bis(oxidanyl)phenyl]-3-(4-hydroxyphenyl)propan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HIN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 259 A CYS 255 1_555 A SG CYS 515 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? disulf ? disulf2 A SG CYS 349 A CYS 345 1_555 A SG CYS 355 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? disulf ? disulf3 A SG CYS 359 A CYS 355 1_555 A SG CYS 365 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? disulf ? disulf4 A SG CYS 521 A CYS 517 1_555 A SG CYS 526 A CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? # _chem_comp.formula 'C21 H24 O10' _chem_comp.formula_weight 436.409 _chem_comp.id LN9 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[2-[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,6-bis(oxidanyl)phenyl]-3-(4-hydroxyphenyl)propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Phlorizin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 LN9 doub 192 n y C2 C3 LN9 sing 193 n y O10 C3 LN9 sing 194 n n C1 C6 LN9 sing 195 n y C3 C4 LN9 doub 196 n y C6 C7 LN9 sing 197 n n C6 C5 LN9 doub 198 n y C4 C5 LN9 sing 199 n y O9 C11 LN9 sing 200 n n C7 C8 LN9 sing 201 n n C12 C11 LN9 doub 202 n y C12 C13 LN9 sing 203 n y O8 C13 LN9 sing 204 n n C11 C10 LN9 sing 205 n y C13 C14 LN9 doub 206 n y C8 C9 LN9 sing 207 n n C10 C15 LN9 doub 208 n y C10 C9 LN9 sing 209 n n C14 C15 LN9 sing 210 n y C15 O2 LN9 sing 211 n n C9 O1 LN9 doub 212 n n O2 C16 LN9 sing 213 n n O7 C17 LN9 sing 214 n n C16 C17 LN9 sing 215 n n C16 O3 LN9 sing 216 n n C17 C18 LN9 sing 217 n n O3 C20 LN9 sing 218 n n C18 O6 LN9 sing 219 n n C18 C19 LN9 sing 220 n n C20 C19 LN9 sing 221 n n C20 C21 LN9 sing 222 n n C19 O5 LN9 sing 223 n n O4 C21 LN9 sing 224 n n C1 H1 LN9 sing 225 n n C2 H2 LN9 sing 226 n n C4 H3 LN9 sing 227 n n C5 H4 LN9 sing 228 n n C7 H5 LN9 sing 229 n n C7 H6 LN9 sing 230 n n C8 H7 LN9 sing 231 n n C8 H8 LN9 sing 232 n n C12 H9 LN9 sing 233 n n C14 H10 LN9 sing 234 n n C16 H11 LN9 sing 235 n n C17 H12 LN9 sing 236 n n C18 H13 LN9 sing 237 n n C19 H14 LN9 sing 238 n n C20 H15 LN9 sing 239 n n C21 H16 LN9 sing 240 n n C21 H17 LN9 sing 241 n n O4 H18 LN9 sing 242 n n O5 H19 LN9 sing 243 n n O6 H20 LN9 sing 244 n n O7 H21 LN9 sing 245 n n O8 H22 LN9 sing 246 n n O9 H23 LN9 sing 247 n n O10 H24 LN9 sing 248 n n # _atom_sites.entry_id 8HIN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 801 801 NAG NAG . D 4 LN9 A 1 802 901 LN9 PHL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LN9 . . . D 4 84.425 67.45 67.542 1 171.28 ? C1 LN9 802 A 1 HETATM 2 C C2 LN9 . . . D 4 83.691 66.433 66.94 1 202.98 ? C2 LN9 802 A 1 HETATM 3 C C3 LN9 . . . D 4 83.244 65.354 67.702 1 208.93 ? C3 LN9 802 A 1 HETATM 4 C C4 LN9 . . . D 4 83.534 65.294 69.061 1 151.6 ? C4 LN9 802 A 1 HETATM 5 C C5 LN9 . . . D 4 84.274 66.307 69.626 1 127.17 ? C5 LN9 802 A 1 HETATM 6 C C6 LN9 . . . D 4 84.727 67.399 68.894 1 120.38 ? C6 LN9 802 A 1 HETATM 7 C C7 LN9 . . . D 4 85.517 68.491 69.548 1 112.22 ? C7 LN9 802 A 1 HETATM 8 C C8 LN9 . . . D 4 84.995 68.783 70.945 1 98.35 ? C8 LN9 802 A 1 HETATM 9 C C9 LN9 . . . D 4 85.452 70.023 71.639 1 110.04 ? C9 LN9 802 A 1 HETATM 10 O O1 LN9 . . . D 4 86.026 69.875 72.707 1 99.29 ? O1 LN9 802 A 1 HETATM 11 C C10 LN9 . . . D 4 85.188 71.374 71.095 1 120.21 ? C10 LN9 802 A 1 HETATM 12 C C11 LN9 . . . D 4 84.249 71.632 70.06 1 132.32 ? C11 LN9 802 A 1 HETATM 13 C C12 LN9 . . . D 4 84.017 72.893 69.562 1 159.04 ? C12 LN9 802 A 1 HETATM 14 C C13 LN9 . . . D 4 84.688 73.966 70.101 1 176.66 ? C13 LN9 802 A 1 HETATM 15 C C14 LN9 . . . D 4 85.614 73.79 71.097 1 163.05 ? C14 LN9 802 A 1 HETATM 16 C C15 LN9 . . . D 4 85.848 72.53 71.603 1 133.87 ? C15 LN9 802 A 1 HETATM 17 O O2 LN9 . . . D 4 86.815 72.502 72.577 1 158.29 ? O2 LN9 802 A 1 HETATM 18 C C16 LN9 . . . D 4 86.658 72.991 73.892 1 187.72 ? C16 LN9 802 A 1 HETATM 19 C C17 LN9 . . . D 4 86.819 74.508 73.982 1 194.25 ? C17 LN9 802 A 1 HETATM 20 C C18 LN9 . . . D 4 86.812 74.864 75.448 1 228.52 ? C18 LN9 802 A 1 HETATM 21 C C19 LN9 . . . D 4 85.508 74.382 76.065 1 227.01 ? C19 LN9 802 A 1 HETATM 22 C C20 LN9 . . . D 4 85.522 72.884 75.896 1 204.29 ? C20 LN9 802 A 1 HETATM 23 O O3 LN9 . . . D 4 85.418 72.638 74.486 1 188.73 ? O3 LN9 802 A 1 HETATM 24 C C21 LN9 . . . D 4 84.421 72.151 76.552 1 208.83 ? C21 LN9 802 A 1 HETATM 25 O O4 LN9 . . . D 4 84.596 70.774 76.252 1 200.26 ? O4 LN9 802 A 1 HETATM 26 O O5 LN9 . . . D 4 85.414 74.713 77.435 1 258.02 ? O5 LN9 802 A 1 HETATM 27 O O6 LN9 . . . D 4 87.019 76.251 75.667 1 250.24 ? O6 LN9 802 A 1 HETATM 28 O O7 LN9 . . . D 4 88.023 74.922 73.36 1 221.34 ? O7 LN9 802 A 1 HETATM 29 O O8 LN9 . . . D 4 84.468 75.219 69.632 1 171.35 ? O8 LN9 802 A 1 HETATM 30 O O9 LN9 . . . D 4 83.499 70.696 69.453 1 112.75 ? O9 LN9 802 A 1 HETATM 31 O O10 LN9 . . . D 4 82.525 64.355 67.122 1 219.23 ? O10 LN9 802 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #