data_8HJ3
#
_model_server_result.job_id            SkVkFtAW-fHWN4tYeyybrg 
_model_server_result.datetime_utc      '2025-09-05 13:40:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hj3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    8HJ3 
#
_exptl.entry_id    8HJ3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 235 n n 
PA O2A NAP sing 236 n n 
PA O5B NAP sing 237 n n 
PA O3 NAP sing 238 n n 
O2A HOA2 NAP sing 239 n n 
O5B C5B NAP sing 240 n n 
C5B C4B NAP sing 241 n n 
C5B H51A NAP sing 242 n n 
C5B H52A NAP sing 243 n n 
C4B O4B NAP sing 244 n n 
C4B C3B NAP sing 245 n n 
C4B H4B NAP sing 246 n n 
O4B C1B NAP sing 247 n n 
C3B O3B NAP sing 248 n n 
C3B C2B NAP sing 249 n n 
C3B H3B NAP sing 250 n n 
O3B HO3A NAP sing 251 n n 
C2B O2B NAP sing 252 n n 
C2B C1B NAP sing 253 n n 
C2B H2B NAP sing 254 n n 
O2B P2B NAP sing 255 n n 
C1B N9A NAP sing 256 n n 
C1B H1B NAP sing 257 n n 
N9A C8A NAP sing 258 n y 
N9A C4A NAP sing 259 n y 
C8A N7A NAP doub 260 n y 
C8A H8A NAP sing 261 n n 
N7A C5A NAP sing 262 n y 
C5A C6A NAP sing 263 n y 
C5A C4A NAP doub 264 n y 
C6A N6A NAP sing 265 n n 
C6A N1A NAP doub 266 n y 
N6A H61A NAP sing 267 n n 
N6A H62A NAP sing 268 n n 
N1A C2A NAP sing 269 n y 
C2A N3A NAP doub 270 n y 
C2A H2A NAP sing 271 n n 
N3A C4A NAP sing 272 n y 
O3 PN NAP sing 273 n n 
PN O1N NAP doub 274 n n 
PN O2N NAP sing 275 n n 
PN O5D NAP sing 276 n n 
O5D C5D NAP sing 277 n n 
C5D C4D NAP sing 278 n n 
C5D H51N NAP sing 279 n n 
C5D H52N NAP sing 280 n n 
C4D O4D NAP sing 281 n n 
C4D C3D NAP sing 282 n n 
C4D H4D NAP sing 283 n n 
O4D C1D NAP sing 284 n n 
C3D O3D NAP sing 285 n n 
C3D C2D NAP sing 286 n n 
C3D H3D NAP sing 287 n n 
O3D HO3N NAP sing 288 n n 
C2D O2D NAP sing 289 n n 
C2D C1D NAP sing 290 n n 
C2D H2D NAP sing 291 n n 
O2D HO2N NAP sing 292 n n 
C1D N1N NAP sing 293 n n 
C1D H1D NAP sing 294 n n 
N1N C2N NAP sing 295 n y 
N1N C6N NAP doub 296 n y 
C2N C3N NAP doub 297 n y 
C2N H2N NAP sing 298 n n 
C3N C7N NAP sing 299 n n 
C3N C4N NAP sing 300 n y 
C7N O7N NAP doub 301 n n 
C7N N7N NAP sing 302 n n 
N7N H71N NAP sing 303 n n 
N7N H72N NAP sing 304 n n 
C4N C5N NAP doub 305 n y 
C4N H4N NAP sing 306 n n 
C5N C6N NAP sing 307 n y 
C5N H5N NAP sing 308 n n 
C6N H6N NAP sing 309 n n 
P2B O1X NAP doub 310 n n 
P2B O2X NAP sing 311 n n 
P2B O3X NAP sing 312 n n 
O2X HOP2 NAP sing 313 n n 
O3X HOP3 NAP sing 314 n n 
#
_atom_sites.entry_id                     8HJ3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           NAP 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      501 
_pdbx_nonpoly_scheme.auth_seq_num     501 
_pdbx_nonpoly_scheme.pdb_mon_id       NAP 
_pdbx_nonpoly_scheme.auth_mon_id      NAP 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 150.431 144.222 148.882 1 53.53 0 PA NAP 501 A 1 
HETATM 2 O O1A NAP . . . B 2 149.166 144.808 149.462 1 53.53 -1 O1A NAP 501 A 1 
HETATM 3 O O2A NAP . . . B 2 151.683 144.149 149.724 1 53.53 0 O2A NAP 501 A 1 
HETATM 4 O O5B NAP . . . B 2 150.782 145.021 147.529 1 53.53 0 O5B NAP 501 A 1 
HETATM 5 C C5B NAP . . . B 2 149.953 146.093 147.086 1 53.53 0 C5B NAP 501 A 1 
HETATM 6 C C4B NAP . . . B 2 150.677 146.873 145.996 1 53.53 0 C4B NAP 501 A 1 
HETATM 7 O O4B NAP . . . B 2 149.808 147.871 145.453 1 53.53 0 O4B NAP 501 A 1 
HETATM 8 C C3B NAP . . . B 2 151.909 147.576 146.547 1 53.53 0 C3B NAP 501 A 1 
HETATM 9 O O3B NAP . . . B 2 153.088 147.026 145.946 1 53.53 0 O3B NAP 501 A 1 
HETATM 10 C C2B NAP . . . B 2 151.725 149.056 146.236 1 53.53 0 C2B NAP 501 A 1 
HETATM 11 O O2B NAP . . . B 2 152.786 149.595 145.448 1 53.53 0 O2B NAP 501 A 1 
HETATM 12 C C1B NAP . . . B 2 150.412 149.167 145.475 1 53.53 0 C1B NAP 501 A 1 
HETATM 13 N N9A NAP . . . B 2 149.516 150.134 146.157 1 53.53 0 N9A NAP 501 A 1 
HETATM 14 C C8A NAP . . . B 2 149.09 150.051 147.432 1 53.53 0 C8A NAP 501 A 1 
HETATM 15 N N7A NAP . . . B 2 148.282 151.096 147.747 1 53.53 0 N7A NAP 501 A 1 
HETATM 16 C C5A NAP . . . B 2 148.183 151.874 146.653 1 53.53 0 C5A NAP 501 A 1 
HETATM 17 C C6A NAP . . . B 2 147.487 153.134 146.297 1 53.53 0 C6A NAP 501 A 1 
HETATM 18 N N6A NAP . . . B 2 146.716 153.787 147.199 1 53.53 0 N6A NAP 501 A 1 
HETATM 19 N N1A NAP . . . B 2 147.649 153.608 145.042 1 53.53 0 N1A NAP 501 A 1 
HETATM 20 C C2A NAP . . . B 2 148.413 152.969 144.137 1 53.53 0 C2A NAP 501 A 1 
HETATM 21 N N3A NAP . . . B 2 149.071 151.824 144.391 1 53.53 0 N3A NAP 501 A 1 
HETATM 22 C C4A NAP . . . B 2 148.998 151.236 145.609 1 53.53 0 C4A NAP 501 A 1 
HETATM 23 O O3 NAP . . . B 2 150.099 142.743 148.34 1 53.53 0 O3 NAP 501 A 1 
HETATM 24 P PN NAP . . . B 2 148.589 142.187 148.359 1 53.53 0 PN NAP 501 A 1 
HETATM 25 O O1N NAP . . . B 2 147.8 142.927 147.305 1 53.53 -1 O1N NAP 501 A 1 
HETATM 26 O O2N NAP . . . B 2 148.108 142.176 149.79 1 53.53 0 O2N NAP 501 A 1 
HETATM 27 O O5D NAP . . . B 2 148.769 140.662 147.876 1 53.53 0 O5D NAP 501 A 1 
HETATM 28 C C5D NAP . . . B 2 148.147 139.598 148.594 1 53.53 0 C5D NAP 501 A 1 
HETATM 29 C C4D NAP . . . B 2 149.213 138.773 149.304 1 53.53 0 C4D NAP 501 A 1 
HETATM 30 O O4D NAP . . . B 2 148.611 137.625 149.91 1 53.53 0 O4D NAP 501 A 1 
HETATM 31 C C3D NAP . . . B 2 150.274 138.285 148.329 1 53.53 0 C3D NAP 501 A 1 
HETATM 32 O O3D NAP . . . B 2 151.542 138.866 148.66 1 53.53 0 O3D NAP 501 A 1 
HETATM 33 C C2D NAP . . . B 2 150.276 136.765 148.431 1 53.53 0 C2D NAP 501 A 1 
HETATM 34 O O2D NAP . . . B 2 151.528 136.243 148.896 1 53.53 0 O2D NAP 501 A 1 
HETATM 35 C C1D NAP . . . B 2 149.175 136.406 149.417 1 53.53 0 C1D NAP 501 A 1 
HETATM 36 N N1N NAP . . . B 2 148.146 135.61 148.739 1 53.53 0 N1N NAP 501 A 1 
HETATM 37 C C2N NAP . . . B 2 148.435 134.364 148.343 1 53.53 0 C2N NAP 501 A 1 
HETATM 38 C C3N NAP . . . B 2 147.482 133.584 147.698 1 53.53 0 C3N NAP 501 A 1 
HETATM 39 C C7N NAP . . . B 2 147.817 132.189 147.259 1 53.53 0 C7N NAP 501 A 1 
HETATM 40 O O7N NAP . . . B 2 147.118 131.643 146.421 1 53.53 0 O7N NAP 501 A 1 
HETATM 41 N N7N NAP . . . B 2 148.872 131.581 147.798 1 53.53 0 N7N NAP 501 A 1 
HETATM 42 C C4N NAP . . . B 2 146.217 134.104 147.464 1 53.53 0 C4N NAP 501 A 1 
HETATM 43 C C5N NAP . . . B 2 145.942 135.398 147.883 1 53.53 0 C5N NAP 501 A 1 
HETATM 44 C C6N NAP . . . B 2 146.932 136.134 148.524 1 53.53 0 C6N NAP 501 A 1 
HETATM 45 P P2B NAP . . . B 2 152.815 151.163 145.083 1 53.53 0 P2B NAP 501 A 1 
HETATM 46 O O1X NAP . . . B 2 152.433 151.845 146.374 1 53.53 0 O1X NAP 501 A 1 
HETATM 47 O O2X NAP . . . B 2 154.239 151.408 144.646 1 53.53 -1 O2X NAP 501 A 1 
HETATM 48 O O3X NAP . . . B 2 151.792 151.299 143.98 1 53.53 0 O3X NAP 501 A 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           48 
#