data_8HJT # _model_server_result.job_id tZ6PEWRU2XFeqO6vCTHIQw _model_server_result.datetime_utc '2025-07-21 17:54:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 8HJT # _exptl.entry_id 8HJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 262.092 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8HJT _cell.length_a 78.188 _cell.length_b 78.188 _cell.length_c 299.827 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C5 H12 O8 P2' _chem_comp.formula_weight 262.092 _chem_comp.id H6P _chem_comp.mon_nstd_flag . _chem_comp.name '(2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O14 P13 H6P doub 162 n n O15 P13 H6P sing 163 n n O16 P13 H6P sing 164 n n P13 O29 H6P sing 165 n n O15 HO15 H6P sing 166 n n O16 P17 H6P sing 167 n n O19 P17 H6P doub 168 n n P17 O20 H6P sing 169 n n P17 O18 H6P sing 170 n n O18 HO18 H6P sing 171 n n O20 HO20 H6P sing 172 n n C21 C30 H6P sing 173 n n C21 H21 H6P sing 174 n n C21 H21A H6P sing 175 n n C21 H21B H6P sing 176 n n C30 C27 H6P doub 177 e n C28 C27 H6P sing 178 n n C27 H27 H6P sing 179 n n O29 C28 H6P sing 180 n n C28 H28 H6P sing 181 n n C28 H28A H6P sing 182 n n C30 C31 H6P sing 183 n n C31 O33 H6P sing 184 n n C31 H31 H6P sing 185 n n C31 H31A H6P sing 186 n n O33 HO33 H6P sing 187 n n # _atom_sites.entry_id 8HJT _atom_sites.fract_transf_matrix[1][1] 0.01279 _atom_sites.fract_transf_matrix[1][2] 0.007384 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 H6P C 1 601 1 H6P H6P . F 4 EPE C 1 602 1 EPE EPE . G 3 H6P D 1 601 2 H6P H6P . H 5 HOH A 1 601 63 HOH HOH . H 5 HOH A 2 602 112 HOH HOH . H 5 HOH A 3 603 62 HOH HOH . H 5 HOH A 4 604 4 HOH HOH . H 5 HOH A 5 605 70 HOH HOH . H 5 HOH A 6 606 78 HOH HOH . H 5 HOH A 7 607 1 HOH HOH . H 5 HOH A 8 608 66 HOH HOH . H 5 HOH A 9 609 65 HOH HOH . H 5 HOH A 10 610 68 HOH HOH . H 5 HOH A 11 611 60 HOH HOH . H 5 HOH A 12 612 58 HOH HOH . H 5 HOH A 13 613 24 HOH HOH . H 5 HOH A 14 614 32 HOH HOH . H 5 HOH A 15 615 41 HOH HOH . H 5 HOH A 16 616 64 HOH HOH . H 5 HOH A 17 617 69 HOH HOH . H 5 HOH A 18 618 23 HOH HOH . H 5 HOH A 19 619 72 HOH HOH . H 5 HOH A 20 620 59 HOH HOH . H 5 HOH A 21 621 84 HOH HOH . H 5 HOH A 22 622 71 HOH HOH . H 5 HOH A 23 623 34 HOH HOH . H 5 HOH A 24 624 83 HOH HOH . H 5 HOH A 25 625 42 HOH HOH . H 5 HOH A 26 626 61 HOH HOH . H 5 HOH A 27 627 99 HOH HOH . H 5 HOH A 28 628 21 HOH HOH . H 5 HOH A 29 629 67 HOH HOH . H 5 HOH A 30 630 108 HOH HOH . I 5 HOH B 1 601 73 HOH HOH . I 5 HOH B 2 602 5 HOH HOH . I 5 HOH B 3 603 7 HOH HOH . I 5 HOH B 4 604 106 HOH HOH . I 5 HOH B 5 605 22 HOH HOH . I 5 HOH B 6 606 74 HOH HOH . I 5 HOH B 7 607 25 HOH HOH . I 5 HOH B 8 608 76 HOH HOH . I 5 HOH B 9 609 55 HOH HOH . I 5 HOH B 10 610 31 HOH HOH . I 5 HOH B 11 611 30 HOH HOH . I 5 HOH B 12 612 33 HOH HOH . J 5 HOH C 1 701 35 HOH HOH . J 5 HOH C 2 702 9 HOH HOH . J 5 HOH C 3 703 11 HOH HOH . J 5 HOH C 4 704 40 HOH HOH . J 5 HOH C 5 705 46 HOH HOH . J 5 HOH C 6 706 19 HOH HOH . J 5 HOH C 7 707 17 HOH HOH . J 5 HOH C 8 708 50 HOH HOH . J 5 HOH C 9 709 39 HOH HOH . J 5 HOH C 10 710 107 HOH HOH . J 5 HOH C 11 711 28 HOH HOH . J 5 HOH C 12 712 89 HOH HOH . J 5 HOH C 13 713 57 HOH HOH . J 5 HOH C 14 714 48 HOH HOH . J 5 HOH C 15 715 45 HOH HOH . J 5 HOH C 16 716 8 HOH HOH . J 5 HOH C 17 717 6 HOH HOH . J 5 HOH C 18 718 103 HOH HOH . J 5 HOH C 19 719 29 HOH HOH . J 5 HOH C 20 720 47 HOH HOH . J 5 HOH C 21 721 52 HOH HOH . J 5 HOH C 22 722 37 HOH HOH . J 5 HOH C 23 723 12 HOH HOH . J 5 HOH C 24 724 88 HOH HOH . J 5 HOH C 25 725 16 HOH HOH . J 5 HOH C 26 726 110 HOH HOH . J 5 HOH C 27 727 79 HOH HOH . J 5 HOH C 28 728 20 HOH HOH . J 5 HOH C 29 729 82 HOH HOH . J 5 HOH C 30 730 36 HOH HOH . J 5 HOH C 31 731 27 HOH HOH . J 5 HOH C 32 732 43 HOH HOH . J 5 HOH C 33 733 53 HOH HOH . J 5 HOH C 34 734 85 HOH HOH . J 5 HOH C 35 735 15 HOH HOH . J 5 HOH C 36 736 90 HOH HOH . J 5 HOH C 37 737 80 HOH HOH . J 5 HOH C 38 738 101 HOH HOH . J 5 HOH C 39 739 18 HOH HOH . J 5 HOH C 40 740 87 HOH HOH . J 5 HOH C 41 741 104 HOH HOH . J 5 HOH C 42 742 81 HOH HOH . J 5 HOH C 43 743 38 HOH HOH . J 5 HOH C 44 744 44 HOH HOH . J 5 HOH C 45 745 49 HOH HOH . J 5 HOH C 46 746 75 HOH HOH . J 5 HOH C 47 747 26 HOH HOH . J 5 HOH C 48 748 54 HOH HOH . J 5 HOH C 49 749 91 HOH HOH . J 5 HOH C 50 750 105 HOH HOH . J 5 HOH C 51 751 86 HOH HOH . J 5 HOH C 52 752 51 HOH HOH . K 5 HOH D 1 701 95 HOH HOH . K 5 HOH D 2 702 2 HOH HOH . K 5 HOH D 3 703 100 HOH HOH . K 5 HOH D 4 704 13 HOH HOH . K 5 HOH D 5 705 10 HOH HOH . K 5 HOH D 6 706 98 HOH HOH . K 5 HOH D 7 707 109 HOH HOH . K 5 HOH D 8 708 14 HOH HOH . K 5 HOH D 9 709 94 HOH HOH . K 5 HOH D 10 710 102 HOH HOH . K 5 HOH D 11 711 111 HOH HOH . K 5 HOH D 12 712 93 HOH HOH . K 5 HOH D 13 713 56 HOH HOH . K 5 HOH D 14 714 3 HOH HOH . K 5 HOH D 15 715 96 HOH HOH . K 5 HOH D 16 716 97 HOH HOH . K 5 HOH D 17 717 92 HOH HOH . K 5 HOH D 18 718 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P13 H6P . . . E 3 40.525 -15.177 -1.515 1 17.98 ? P13 H6P 601 C 1 HETATM 2 O O14 H6P . . . E 3 40.996 -13.74 -1.517 1 10.76 ? O14 H6P 601 C 1 HETATM 3 O O15 H6P . . . E 3 39.681 -15.452 -0.292 1 19.95 -1 O15 H6P 601 C 1 HETATM 4 O O16 H6P . . . E 3 39.629 -15.456 -2.868 1 18.66 ? O16 H6P 601 C 1 HETATM 5 P P17 H6P . . . E 3 40.088 -14.942 -4.363 1 12.54 ? P17 H6P 601 C 1 HETATM 6 O O18 H6P . . . E 3 39.456 -13.599 -4.651 1 11.95 ? O18 H6P 601 C 1 HETATM 7 O O19 H6P . . . E 3 39.646 -15.952 -5.393 1 17.49 ? O19 H6P 601 C 1 HETATM 8 O O20 H6P . . . E 3 41.59 -14.815 -4.408 1 15.78 -1 O20 H6P 601 C 1 HETATM 9 C C21 H6P . . . E 3 41.851 -20.162 -0.367 1 14.37 ? C21 H6P 601 C 1 HETATM 10 C C27 H6P . . . E 3 42.872 -18.334 -1.68 1 17.73 ? C27 H6P 601 C 1 HETATM 11 C C28 H6P . . . E 3 41.551 -17.574 -1.588 1 16.99 ? C28 H6P 601 C 1 HETATM 12 O O29 H6P . . . E 3 41.814 -16.201 -1.511 1 17.15 ? O29 H6P 601 C 1 HETATM 13 C C30 H6P . . . E 3 43.011 -19.52 -1.124 1 16.91 ? C30 H6P 601 C 1 HETATM 14 C C31 H6P . . . E 3 44.346 -20.253 -1.234 1 19.43 ? C31 H6P 601 C 1 HETATM 15 O O33 H6P . . . E 3 45.01 -19.841 -2.398 1 16.81 ? O33 H6P 601 C 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #