data_8HJV # _model_server_result.job_id ZHC4k-M_dJ5WG0AnCJBnhA _model_server_result.datetime_utc '2025-04-05 11:47:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"XA","auth_seq_id":101}' # _entry.id 8HJV # _exptl.entry_id 8HJV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 550.856 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta,psi-caroten-4-one _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 35-meric _pdbx_struct_assembly.oligomeric_count 35 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 XA N N ? 9 DB N N ? 9 MB N N ? 9 OB N N ? 9 FC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 HA SG CYS 118 C CYS 118 1_555 UC CAB HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? covale ? covale2 HA SG CYS 121 C CYS 121 1_555 UC CAC HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? covale ? covale3 HA SG CYS 171 C CYS 171 1_555 VC CAB HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? covale ? covale4 HA SG CYS 174 C CYS 174 1_555 VC CAC HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? covale ? covale5 HA SG CYS 293 C CYS 293 1_555 XC CAB HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? covale ? covale6 HA SG CYS 296 C CYS 296 1_555 XC CAC HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc1 U NE2 HIS 229 L HIS 229 1_555 ZB FE FE . M FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc2 V NE2 HIS 208 M HIS 542 1_555 ZB FE FE . M FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 V OE1 GLU 223 M GLU 557 1_555 ZB FE FE . M FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc4 V OE2 GLU 223 M GLU 557 1_555 ZB FE FE . M FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc5 V NE2 HIS 255 M HIS 589 1_555 ZB FE FE . M FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 HA SD MET 106 C MET 106 1_555 UC FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc7 HA NE2 HIS 122 C HIS 122 1_555 UC FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc8 HA SD MET 145 C MET 145 1_555 VC FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc9 HA NE2 HIS 175 C HIS 175 1_555 VC FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc10 HA SD MET 229 C MET 229 1_555 WC FE HEM . C HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc11 HA NE2 HIS 244 C HIS 244 1_555 WC FE HEM . C HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc12 HA SD MET 263 C MET 263 1_555 XC FE HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc13 HA NE2 HIS 297 C HIS 297 1_555 XC FE HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'C40 H54 O' _chem_comp.formula_weight 550.856 _chem_comp.id KGD _chem_comp.mon_nstd_flag . _chem_comp.name beta,psi-caroten-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Keto-gamma-carotene # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAK CAH KGD sing 547 n n CAN CAM KGD sing 548 n n OAA CAI KGD doub 549 n n CAU CAR KGD sing 550 n n CAH CAI KGD sing 551 n n CAH CAD KGD doub 552 n n CAI CAE KGD sing 553 n n CAJ CAD KGD sing 554 n n CAJ CAL KGD doub 555 e n CAM CAL KGD sing 556 n n CAM CAO KGD doub 557 e n CAP CAO KGD sing 558 n n CAP CAQ KGD doub 559 e n CAD CAB KGD sing 560 n n CAR CAQ KGD sing 561 n n CAR CAV KGD doub 562 e n CAE CAC KGD sing 563 n n CBB CAV KGD sing 564 n n CBB CBG KGD doub 565 e n CAB CAG KGD sing 566 n n CAB CAC KGD sing 567 n n CAB CAF KGD sing 568 n n CBI CBG KGD sing 569 n n CBI CBL KGD doub 570 e n CBN CBL KGD sing 571 n n CBN CBM KGD doub 572 e n CBL CBO KGD sing 573 n n CBJ CBM KGD sing 574 n n CBJ CBH KGD doub 575 e n CBF CBH KGD sing 576 n n CBF CBE KGD doub 577 e n CBH CBK KGD sing 578 n n CBA CBE KGD sing 579 n n CBA CAW KGD doub 580 e n CAT CAS KGD sing 581 n n CAT CAX KGD sing 582 n n CAS CAW KGD sing 583 n n CBC CAY KGD sing 584 n n CAW CAZ KGD sing 585 n n CAX CAY KGD doub 586 n n CAY CBD KGD sing 587 n n CAC H1 KGD sing 588 n n CAC H2 KGD sing 589 n n CAE H3 KGD sing 590 n n CAE H4 KGD sing 591 n n CAF H5 KGD sing 592 n n CAF H6 KGD sing 593 n n CAF H7 KGD sing 594 n n CAG H8 KGD sing 595 n n CAG H9 KGD sing 596 n n CAG H10 KGD sing 597 n n CAJ H11 KGD sing 598 n n CAK H12 KGD sing 599 n n CAK H13 KGD sing 600 n n CAK H14 KGD sing 601 n n CAL H15 KGD sing 602 n n CAN H16 KGD sing 603 n n CAN H17 KGD sing 604 n n CAN H18 KGD sing 605 n n CAO H19 KGD sing 606 n n CAP H20 KGD sing 607 n n CAQ H22 KGD sing 608 n n CAS H23 KGD sing 609 n n CAS H24 KGD sing 610 n n CAT H25 KGD sing 611 n n CAT H26 KGD sing 612 n n CAU H27 KGD sing 613 n n CAU H28 KGD sing 614 n n CAU H29 KGD sing 615 n n CAV H30 KGD sing 616 n n CAX H32 KGD sing 617 n n CAZ H33 KGD sing 618 n n CAZ H34 KGD sing 619 n n CAZ H35 KGD sing 620 n n CBA H36 KGD sing 621 n n CBB H37 KGD sing 622 n n CBC H39 KGD sing 623 n n CBC H40 KGD sing 624 n n CBC H41 KGD sing 625 n n CBD H42 KGD sing 626 n n CBD H43 KGD sing 627 n n CBD H44 KGD sing 628 n n CBE H45 KGD sing 629 n n CBF H47 KGD sing 630 n n CBG H49 KGD sing 631 n n CBI H52 KGD sing 632 n n CBJ H54 KGD sing 633 n n CBK H56 KGD sing 634 n n CBK H57 KGD sing 635 n n CBK H58 KGD sing 636 n n CBM H59 KGD sing 637 n n CBN H61 KGD sing 638 n n CBO H62 KGD sing 639 n n CBO H63 KGD sing 640 n n CBO H64 KGD sing 641 n n # _atom_sites.entry_id 8HJV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code JA 8 BCL 0 1 101 101 BCL BCL . KA 8 BCL 0 1 102 101 BCL BCL . LA 8 BCL 1 1 101 101 BCL BCL . MA 8 BCL 2 1 101 101 BCL BCL . NA 8 BCL 2 1 102 102 BCL BCL . OA 8 BCL 3 1 101 101 BCL BCL . PA 8 BCL 4 1 101 102 BCL BCL . QA 8 BCL 4 1 102 101 BCL BCL . RA 8 BCL 5 1 101 101 BCL BCL . SA 8 BCL 6 1 101 102 BCL BCL . TA 8 BCL 6 1 102 101 BCL BCL . UA 8 BCL 7 1 101 101 BCL BCL . VA 8 BCL 8 1 101 102 BCL BCL . WA 8 BCL 8 1 102 101 BCL BCL . XA 9 KGD 9 1 101 102 KGD KGD . YA 8 BCL 9 1 102 103 BCL BCL . ZA 8 BCL A 1 101 101 BCL BCL . AB 8 BCL B 1 101 102 BCL BCL . BB 8 BCL B 1 102 101 BCL BCL . CB 8 BCL D 1 101 101 BCL BCL . DB 9 KGD D 1 102 103 KGD KGD . EB 8 BCL E 1 101 102 BCL BCL . FB 8 BCL E 1 102 101 BCL BCL . GB 8 BCL F 1 101 101 BCL BCL . HB 8 BCL G 1 101 102 BCL BCL . IB 8 BCL G 1 102 101 BCL BCL . JB 8 BCL H 1 101 101 BCL BCL . KB 8 BCL I 1 101 102 BCL BCL . LB 8 BCL I 1 102 101 BCL BCL . MB 9 KGD I 1 103 102 KGD KGD . NB 8 BCL J 1 101 101 BCL BCL . OB 9 KGD J 1 102 103 KGD KGD . PB 8 BCL K 1 101 102 BCL BCL . QB 8 BCL K 1 102 101 BCL BCL . RB 8 BCL L 1 401 401 BCL BCL . SB 10 BPH L 1 402 402 BPH BPH . TB 11 MQE L 1 403 403 MQE MQE . UB 10 BPH L 1 404 404 BPH BPH . VB 10 BPH L 1 405 405 BPH BPH . WB 8 BCL M 1 1001 1001 BCL BCL . XB 11 MQE M 1 1002 1002 MQE MQE . YB 11 MQE M 1 1003 1014 MQE MQE . ZB 12 FE M 1 1004 1003 FE FE . AC 8 BCL M 1 1005 1004 BCL BCL . BC 13 PGV M 1 1006 2 PGV PGV . CC 13 PGV M 1 1007 3 PGV PGV . DC 13 PGV M 1 1008 7 PGV PGV . EC 8 BCL N 1 101 101 BCL BCL . FC 9 KGD N 1 102 103 KGD KGD . GC 8 BCL O 1 101 102 BCL BCL . HC 8 BCL O 1 102 101 BCL BCL . IC 8 BCL P 1 101 101 BCL BCL . JC 8 BCL Q 1 101 102 BCL BCL . KC 8 BCL Q 1 102 101 BCL BCL . LC 8 BCL R 1 101 101 BCL BCL . MC 8 BCL S 1 101 102 BCL BCL . NC 8 BCL S 1 102 101 BCL BCL . OC 8 BCL T 1 101 101 BCL BCL . PC 8 BCL U 1 101 102 BCL BCL . QC 8 BCL U 1 102 101 BCL BCL . RC 8 BCL V 1 101 101 BCL BCL . SC 8 BCL W 1 101 101 BCL BCL . TC 8 BCL W 1 102 102 BCL BCL . UC 14 HEM C 1 501 501 HEM HEM . VC 14 HEM C 1 502 502 HEM HEM . WC 14 HEM C 1 503 503 HEM HEM . XC 14 HEM C 1 504 504 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB KGD . . . XA 9 121.615 167.287 114.671 1 57.74 ? CAB KGD 101 9 1 HETATM 2 C CAC KGD . . . XA 9 123.076 167.41 115.119 1 57.74 ? CAC KGD 101 9 1 HETATM 3 C CAD KGD . . . XA 9 121.221 165.865 114.888 1 57.74 ? CAD KGD 101 9 1 HETATM 4 C CAE KGD . . . XA 9 123.218 166.945 116.554 1 57.74 ? CAE KGD 101 9 1 HETATM 5 C CAF KGD . . . XA 9 120.729 168.147 115.552 1 57.74 ? CAF KGD 101 9 1 HETATM 6 C CAG KGD . . . XA 9 121.471 167.704 113.195 1 57.74 ? CAG KGD 101 9 1 HETATM 7 C CAH KGD . . . XA 9 121.606 165.134 115.934 1 57.74 ? CAH KGD 101 9 1 HETATM 8 C CAI KGD . . . XA 9 122.768 165.533 116.723 1 57.74 ? CAI KGD 101 9 1 HETATM 9 C CAJ KGD . . . XA 9 120.199 165.281 114.043 1 57.74 ? CAJ KGD 101 9 1 HETATM 10 C CAK KGD . . . XA 9 120.68 164.204 116.61 1 57.74 ? CAK KGD 101 9 1 HETATM 11 C CAL KGD . . . XA 9 118.955 165.781 114.045 1 57.74 ? CAL KGD 101 9 1 HETATM 12 C CAM KGD . . . XA 9 117.972 165.143 113.229 1 57.74 ? CAM KGD 101 9 1 HETATM 13 C CAN KGD . . . XA 9 118.458 164.347 112.075 1 57.74 ? CAN KGD 101 9 1 HETATM 14 C CAO KGD . . . XA 9 116.692 165.282 113.57 1 57.74 ? CAO KGD 101 9 1 HETATM 15 C CAP KGD . . . XA 9 115.717 164.588 112.806 1 57.74 ? CAP KGD 101 9 1 HETATM 16 C CAQ KGD . . . XA 9 114.878 165.062 111.898 1 57.74 ? CAQ KGD 101 9 1 HETATM 17 C CAR KGD . . . XA 9 114.02 164.039 111.356 1 57.74 ? CAR KGD 101 9 1 HETATM 18 C CAS KGD . . . XA 9 103.031 156.609 104.658 1 57.74 ? CAS KGD 101 9 1 HETATM 19 C CAT KGD . . . XA 9 102.681 156.125 103.235 1 57.74 ? CAT KGD 101 9 1 HETATM 20 C CAU KGD . . . XA 9 114.523 162.651 111.401 1 57.74 ? CAU KGD 101 9 1 HETATM 21 C CAV KGD . . . XA 9 112.816 164.336 110.878 1 57.74 ? CAV KGD 101 9 1 HETATM 22 C CAW KGD . . . XA 9 104.048 157.695 104.602 1 57.74 ? CAW KGD 101 9 1 HETATM 23 C CAX KGD . . . XA 9 103.635 155.072 102.747 1 57.74 ? CAX KGD 101 9 1 HETATM 24 C CAY KGD . . . XA 9 103.821 154.843 101.447 1 57.74 ? CAY KGD 101 9 1 HETATM 25 C CAZ KGD . . . XA 9 104.678 157.996 103.356 1 57.74 ? CAZ KGD 101 9 1 HETATM 26 C CBA KGD . . . XA 9 104.396 158.383 105.675 1 57.74 ? CBA KGD 101 9 1 HETATM 27 C CBB KGD . . . XA 9 112.012 163.246 110.404 1 57.74 ? CBB KGD 101 9 1 HETATM 28 C CBC KGD . . . XA 9 103.078 155.597 100.429 1 57.74 ? CBC KGD 101 9 1 HETATM 29 C CBD KGD . . . XA 9 104.769 153.809 100.997 1 57.74 ? CBD KGD 101 9 1 HETATM 30 C CBE KGD . . . XA 9 103.826 158.148 106.94 1 57.74 ? CBE KGD 101 9 1 HETATM 31 C CBF KGD . . . XA 9 104.201 158.837 108.022 1 57.74 ? CBF KGD 101 9 1 HETATM 32 C CBG KGD . . . XA 9 110.907 162.999 111.103 1 57.74 ? CBG KGD 101 9 1 HETATM 33 C CBH KGD . . . XA 9 105.201 159.895 108.009 1 57.74 ? CBH KGD 101 9 1 HETATM 34 C CBI KGD . . . XA 9 109.934 161.957 110.853 1 57.74 ? CBI KGD 101 9 1 HETATM 35 C CBJ KGD . . . XA 9 106.344 159.709 108.684 1 57.74 ? CBJ KGD 101 9 1 HETATM 36 C CBK KGD . . . XA 9 104.897 161.162 107.298 1 57.74 ? CBK KGD 101 9 1 HETATM 37 C CBL KGD . . . XA 9 109.191 161.878 109.738 1 57.74 ? CBL KGD 101 9 1 HETATM 38 C CBM KGD . . . XA 9 107.313 160.766 108.716 1 57.74 ? CBM KGD 101 9 1 HETATM 39 C CBN KGD . . . XA 9 108.237 160.801 109.678 1 57.74 ? CBN KGD 101 9 1 HETATM 40 C CBO KGD . . . XA 9 109.257 162.815 108.591 1 57.74 ? CBO KGD 101 9 1 HETATM 41 O OAA KGD . . . XA 9 123.337 164.761 117.474 1 57.74 ? OAA KGD 101 9 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 393 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #