data_8HJV # _model_server_result.job_id '_EpP7wWa8hCDg6LHIEkKDg' _model_server_result.datetime_utc '2025-04-08 07:21:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"XC","auth_seq_id":504}' # _entry.id 8HJV # _exptl.entry_id 8HJV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 35-meric _pdbx_struct_assembly.oligomeric_count 35 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 UC N N ? 14 VC N N ? 14 WC N N ? 14 XC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 HA SG CYS 118 C CYS 118 1_555 UC CAB HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? covale ? covale2 HA SG CYS 121 C CYS 121 1_555 UC CAC HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? covale ? covale3 HA SG CYS 171 C CYS 171 1_555 VC CAB HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? covale ? covale4 HA SG CYS 174 C CYS 174 1_555 VC CAC HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? covale ? covale5 HA SG CYS 293 C CYS 293 1_555 XC CAB HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? covale ? covale6 HA SG CYS 296 C CYS 296 1_555 XC CAC HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc1 U NE2 HIS 229 L HIS 229 1_555 ZB FE FE . M FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc2 V NE2 HIS 208 M HIS 542 1_555 ZB FE FE . M FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 V OE1 GLU 223 M GLU 557 1_555 ZB FE FE . M FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc4 V OE2 GLU 223 M GLU 557 1_555 ZB FE FE . M FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc5 V NE2 HIS 255 M HIS 589 1_555 ZB FE FE . M FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 HA SD MET 106 C MET 106 1_555 UC FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc7 HA NE2 HIS 122 C HIS 122 1_555 UC FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc8 HA SD MET 145 C MET 145 1_555 VC FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc9 HA NE2 HIS 175 C HIS 175 1_555 VC FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc10 HA SD MET 229 C MET 229 1_555 WC FE HEM . C HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc11 HA NE2 HIS 244 C HIS 244 1_555 WC FE HEM . C HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc12 HA SD MET 263 C MET 263 1_555 XC FE HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc13 HA NE2 HIS 297 C HIS 297 1_555 XC FE HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 423 n n CHA C4D HEM doub 424 n n CHA HHA HEM sing 425 n n CHB C4A HEM sing 426 n n CHB C1B HEM doub 427 n n CHB HHB HEM sing 428 n n CHC C4B HEM sing 429 n n CHC C1C HEM doub 430 n n CHC HHC HEM sing 431 n n CHD C4C HEM doub 432 n n CHD C1D HEM sing 433 n n CHD HHD HEM sing 434 n n C1A C2A HEM doub 435 n y C1A NA HEM sing 436 n y C2A C3A HEM sing 437 n y C2A CAA HEM sing 438 n n C3A C4A HEM doub 439 n y C3A CMA HEM sing 440 n n C4A NA HEM sing 441 n y CMA HMA HEM sing 442 n n CMA HMAA HEM sing 443 n n CMA HMAB HEM sing 444 n n CAA CBA HEM sing 445 n n CAA HAA HEM sing 446 n n CAA HAAA HEM sing 447 n n CBA CGA HEM sing 448 n n CBA HBA HEM sing 449 n n CBA HBAA HEM sing 450 n n CGA O1A HEM doub 451 n n CGA O2A HEM sing 452 n n C1B C2B HEM sing 453 n n C1B NB HEM sing 454 n n C2B C3B HEM doub 455 n n C2B CMB HEM sing 456 n n C3B C4B HEM sing 457 n n C3B CAB HEM sing 458 n n C4B NB HEM doub 459 n n CMB HMB HEM sing 460 n n CMB HMBA HEM sing 461 n n CMB HMBB HEM sing 462 n n CAB CBB HEM doub 463 n n CAB HAB HEM sing 464 n n CBB HBB HEM sing 465 n n CBB HBBA HEM sing 466 n n C1C C2C HEM sing 467 n y C1C NC HEM sing 468 n y C2C C3C HEM doub 469 n y C2C CMC HEM sing 470 n n C3C C4C HEM sing 471 n y C3C CAC HEM sing 472 n n C4C NC HEM sing 473 n y CMC HMC HEM sing 474 n n CMC HMCA HEM sing 475 n n CMC HMCB HEM sing 476 n n CAC CBC HEM doub 477 n n CAC HAC HEM sing 478 n n CBC HBC HEM sing 479 n n CBC HBCA HEM sing 480 n n C1D C2D HEM sing 481 n n C1D ND HEM doub 482 n n C2D C3D HEM doub 483 n n C2D CMD HEM sing 484 n n C3D C4D HEM sing 485 n n C3D CAD HEM sing 486 n n C4D ND HEM sing 487 n n CMD HMD HEM sing 488 n n CMD HMDA HEM sing 489 n n CMD HMDB HEM sing 490 n n CAD CBD HEM sing 491 n n CAD HAD HEM sing 492 n n CAD HADA HEM sing 493 n n CBD CGD HEM sing 494 n n CBD HBD HEM sing 495 n n CBD HBDA HEM sing 496 n n CGD O1D HEM doub 497 n n CGD O2D HEM sing 498 n n O2A H2A HEM sing 499 n n O2D H2D HEM sing 500 n n FE NA HEM sing 501 n n FE NB HEM sing 502 n n FE NC HEM sing 503 n n FE ND HEM sing 504 n n # _atom_sites.entry_id 8HJV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code JA 8 BCL 0 1 101 101 BCL BCL . KA 8 BCL 0 1 102 101 BCL BCL . LA 8 BCL 1 1 101 101 BCL BCL . MA 8 BCL 2 1 101 101 BCL BCL . NA 8 BCL 2 1 102 102 BCL BCL . OA 8 BCL 3 1 101 101 BCL BCL . PA 8 BCL 4 1 101 102 BCL BCL . QA 8 BCL 4 1 102 101 BCL BCL . RA 8 BCL 5 1 101 101 BCL BCL . SA 8 BCL 6 1 101 102 BCL BCL . TA 8 BCL 6 1 102 101 BCL BCL . UA 8 BCL 7 1 101 101 BCL BCL . VA 8 BCL 8 1 101 102 BCL BCL . WA 8 BCL 8 1 102 101 BCL BCL . XA 9 KGD 9 1 101 102 KGD KGD . YA 8 BCL 9 1 102 103 BCL BCL . ZA 8 BCL A 1 101 101 BCL BCL . AB 8 BCL B 1 101 102 BCL BCL . BB 8 BCL B 1 102 101 BCL BCL . CB 8 BCL D 1 101 101 BCL BCL . DB 9 KGD D 1 102 103 KGD KGD . EB 8 BCL E 1 101 102 BCL BCL . FB 8 BCL E 1 102 101 BCL BCL . GB 8 BCL F 1 101 101 BCL BCL . HB 8 BCL G 1 101 102 BCL BCL . IB 8 BCL G 1 102 101 BCL BCL . JB 8 BCL H 1 101 101 BCL BCL . KB 8 BCL I 1 101 102 BCL BCL . LB 8 BCL I 1 102 101 BCL BCL . MB 9 KGD I 1 103 102 KGD KGD . NB 8 BCL J 1 101 101 BCL BCL . OB 9 KGD J 1 102 103 KGD KGD . PB 8 BCL K 1 101 102 BCL BCL . QB 8 BCL K 1 102 101 BCL BCL . RB 8 BCL L 1 401 401 BCL BCL . SB 10 BPH L 1 402 402 BPH BPH . TB 11 MQE L 1 403 403 MQE MQE . UB 10 BPH L 1 404 404 BPH BPH . VB 10 BPH L 1 405 405 BPH BPH . WB 8 BCL M 1 1001 1001 BCL BCL . XB 11 MQE M 1 1002 1002 MQE MQE . YB 11 MQE M 1 1003 1014 MQE MQE . ZB 12 FE M 1 1004 1003 FE FE . AC 8 BCL M 1 1005 1004 BCL BCL . BC 13 PGV M 1 1006 2 PGV PGV . CC 13 PGV M 1 1007 3 PGV PGV . DC 13 PGV M 1 1008 7 PGV PGV . EC 8 BCL N 1 101 101 BCL BCL . FC 9 KGD N 1 102 103 KGD KGD . GC 8 BCL O 1 101 102 BCL BCL . HC 8 BCL O 1 102 101 BCL BCL . IC 8 BCL P 1 101 101 BCL BCL . JC 8 BCL Q 1 101 102 BCL BCL . KC 8 BCL Q 1 102 101 BCL BCL . LC 8 BCL R 1 101 101 BCL BCL . MC 8 BCL S 1 101 102 BCL BCL . NC 8 BCL S 1 102 101 BCL BCL . OC 8 BCL T 1 101 101 BCL BCL . PC 8 BCL U 1 101 102 BCL BCL . QC 8 BCL U 1 102 101 BCL BCL . RC 8 BCL V 1 101 101 BCL BCL . SC 8 BCL W 1 101 101 BCL BCL . TC 8 BCL W 1 102 102 BCL BCL . UC 14 HEM C 1 501 501 HEM HEM . VC 14 HEM C 1 502 502 HEM HEM . WC 14 HEM C 1 503 503 HEM HEM . XC 14 HEM C 1 504 504 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . XC 14 99.546 104.111 81.031 1 34.6 ? CHA HEM 504 C 1 HETATM 2 C CHB HEM . . . XC 14 102.308 107.488 83.109 1 34.6 ? CHB HEM 504 C 1 HETATM 3 C CHC HEM . . . XC 14 100.509 110.762 80.009 1 34.6 ? CHC HEM 504 C 1 HETATM 4 C CHD HEM . . . XC 14 97.053 107.582 78.793 1 34.6 ? CHD HEM 504 C 1 HETATM 5 C C1A HEM . . . XC 14 100.489 104.776 81.802 1 34.6 ? C1A HEM 504 C 1 HETATM 6 C C2A HEM . . . XC 14 101.388 104.115 82.668 1 34.6 ? C2A HEM 504 C 1 HETATM 7 C C3A HEM . . . XC 14 102.17 105.046 83.26 1 34.6 ? C3A HEM 504 C 1 HETATM 8 C C4A HEM . . . XC 14 101.769 106.291 82.766 1 34.6 ? C4A HEM 504 C 1 HETATM 9 C CMA HEM . . . XC 14 103.265 104.803 84.259 1 34.6 ? CMA HEM 504 C 1 HETATM 10 C CAA HEM . . . XC 14 101.472 102.639 82.92 1 34.6 ? CAA HEM 504 C 1 HETATM 11 C CBA HEM . . . XC 14 100.423 102.307 83.982 1 34.6 ? CBA HEM 504 C 1 HETATM 12 C CGA HEM . . . XC 14 100.881 101.156 84.826 1 34.6 ? CGA HEM 504 C 1 HETATM 13 O O1A HEM . . . XC 14 100.446 101.037 85.943 1 34.6 ? O1A HEM 504 C 1 HETATM 14 O O2A HEM . . . XC 14 101.992 100.495 84.481 1 34.6 ? O2A HEM 504 C 1 HETATM 15 C C1B HEM . . . XC 14 102.016 108.604 82.338 1 34.6 ? C1B HEM 504 C 1 HETATM 16 C C2B HEM . . . XC 14 102.815 109.75 82.518 1 34.6 ? C2B HEM 504 C 1 HETATM 17 C C3B HEM . . . XC 14 102.352 110.693 81.678 1 34.6 ? C3B HEM 504 C 1 HETATM 18 C C4B HEM . . . XC 14 101.223 110.061 80.959 1 34.6 ? C4B HEM 504 C 1 HETATM 19 C CMB HEM . . . XC 14 103.961 109.875 83.482 1 34.6 ? CMB HEM 504 C 1 HETATM 20 C CAB HEM . . . XC 14 102.898 112.049 81.516 1 34.6 ? CAB HEM 504 C 1 HETATM 21 C CBB HEM . . . XC 14 104.146 112.153 81.048 1 34.6 ? CBB HEM 504 C 1 HETATM 22 C C1C HEM . . . XC 14 99.401 110.188 79.444 1 34.6 ? C1C HEM 504 C 1 HETATM 23 C C2C HEM . . . XC 14 98.55 110.835 78.554 1 34.6 ? C2C HEM 504 C 1 HETATM 24 C C3C HEM . . . XC 14 97.558 109.946 78.194 1 34.6 ? C3C HEM 504 C 1 HETATM 25 C C4C HEM . . . XC 14 97.828 108.724 78.896 1 34.6 ? C4C HEM 504 C 1 HETATM 26 C CMC HEM . . . XC 14 98.707 112.256 78.082 1 34.6 ? CMC HEM 504 C 1 HETATM 27 C CAC HEM . . . XC 14 96.456 110.296 77.266 1 34.6 ? CAC HEM 504 C 1 HETATM 28 C CBC HEM . . . XC 14 95.671 109.397 76.677 1 34.6 ? CBC HEM 504 C 1 HETATM 29 C C1D HEM . . . XC 14 97.471 106.321 79.224 1 34.6 ? C1D HEM 504 C 1 HETATM 30 C C2D HEM . . . XC 14 96.833 105.054 78.87 1 34.6 ? C2D HEM 504 C 1 HETATM 31 C C3D HEM . . . XC 14 97.531 104.085 79.494 1 34.6 ? C3D HEM 504 C 1 HETATM 32 C C4D HEM . . . XC 14 98.599 104.759 80.24 1 34.6 ? C4D HEM 504 C 1 HETATM 33 C CMD HEM . . . XC 14 95.636 104.871 77.981 1 34.6 ? CMD HEM 504 C 1 HETATM 34 C CAD HEM . . . XC 14 97.245 102.61 79.435 1 34.6 ? CAD HEM 504 C 1 HETATM 35 C CBD HEM . . . XC 14 98.138 101.928 78.402 1 34.6 ? CBD HEM 504 C 1 HETATM 36 C CGD HEM . . . XC 14 98.087 100.439 78.606 1 34.6 ? CGD HEM 504 C 1 HETATM 37 O O1D HEM . . . XC 14 97.343 99.963 79.43 1 34.6 ? O1D HEM 504 C 1 HETATM 38 O O2D HEM . . . XC 14 98.965 99.651 77.971 1 34.6 ? O2D HEM 504 C 1 HETATM 39 N NA HEM . . . XC 14 100.759 106.13 81.877 1 34.6 ? NA HEM 504 C 1 HETATM 40 N NB HEM . . . XC 14 101.071 108.793 81.392 1 34.6 ? NB HEM 504 C 1 HETATM 41 N NC HEM . . . XC 14 98.976 108.913 79.654 1 34.6 ? NC HEM 504 C 1 HETATM 42 N ND HEM . . . XC 14 98.498 106.064 80.014 1 34.6 ? ND HEM 504 C 1 HETATM 43 FE FE HEM . . . XC 14 99.698 107.447 80.811 1 34.6 ? FE HEM 504 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #