data_8HKJ
#
_model_server_result.job_id            sRSYwON1FGZALmpA9GeIOw 
_model_server_result.datetime_utc      '2025-10-01 02:35:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hkj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":502}' 
#
_entry.id    8HKJ 
#
_exptl.entry_id    8HKJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              256.424 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PALMITIC ACID' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         86.66 
_cell.angle_beta          79.47 
_cell.angle_gamma         84.97 
_cell.entry_id            8HKJ 
_cell.length_a            96.62 
_cell.length_b            126.06 
_cell.length_c            141.44 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HKJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
? monomeric 1 author_defined_assembly 9 
? monomeric 1 author_defined_assembly 10 
? monomeric 1 author_defined_assembly 11 
? monomeric 1 author_defined_assembly 12 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,M,N 1 1 
B,O,P 2 1 
C,Q,R 3 1 
D,S,T,U 4 1 
E,V,W 5 1 
F,X 6 1 
G,Y,Z 7 1 
H,AA,BA 8 1 
I,CA,DA 9 1 
J,EA,FA 10 1 
K,GA,HA 11 1 
L,IA,JA 12 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 U N N 
? 3 W N N 
? 3 Z N N 
? 3 BA N N 
? 3 DA N N 
? 3 FA N N 
? 3 HA N N 
? 3 JA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 405 A CYS 405 1_555 M FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc2 B SG CYS 405 B CYS 405 1_555 O FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc3 C SG CYS 405 C CYS 405 1_555 Q FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc4 D SG CYS 405 D CYS 405 1_555 S FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc5 E SG CYS 405 E CYS 405 1_555 V FE HEM . E HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc6 F SG CYS 405 F CYS 405 1_555 X FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc7 G SG CYS 405 G CYS 405 1_555 Y FE HEM . G HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc8 H SG CYS 405 H CYS 405 1_555 AA FE HEM . H HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc9 I SG CYS 405 I CYS 405 1_555 CA FE HEM . I HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc10 J SG CYS 405 J CYS 405 1_555 EA FE HEM . J HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc11 K SG CYS 405 K CYS 405 1_555 GA FE HEM . K HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc12 L SG CYS 405 L CYS 405 1_555 IA FE HEM . L HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
#
_chem_comp.formula           'C16 H32 O2' 
_chem_comp.formula_weight    256.424 
_chem_comp.id                PLM 
_chem_comp.mon_nstd_flag     ? 
_chem_comp.name              'PALMITIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PLM sing 340 n n 
C1 O2 PLM doub 341 n n 
C1 C2 PLM sing 342 n n 
O1 H PLM sing 343 n n 
C2 C3 PLM sing 344 n n 
C2 H21 PLM sing 345 n n 
C2 H22 PLM sing 346 n n 
C3 C4 PLM sing 347 n n 
C3 H31 PLM sing 348 n n 
C3 H32 PLM sing 349 n n 
C4 C5 PLM sing 350 n n 
C4 H41 PLM sing 351 n n 
C4 H42 PLM sing 352 n n 
C5 C6 PLM sing 353 n n 
C5 H51 PLM sing 354 n n 
C5 H52 PLM sing 355 n n 
C6 C7 PLM sing 356 n n 
C6 H61 PLM sing 357 n n 
C6 H62 PLM sing 358 n n 
C7 C8 PLM sing 359 n n 
C7 H71 PLM sing 360 n n 
C7 H72 PLM sing 361 n n 
C8 C9 PLM sing 362 n n 
C8 H81 PLM sing 363 n n 
C8 H82 PLM sing 364 n n 
C9 CA PLM sing 365 n n 
C9 H91 PLM sing 366 n n 
C9 H92 PLM sing 367 n n 
CA CB PLM sing 368 n n 
CA HA1 PLM sing 369 n n 
CA HA2 PLM sing 370 n n 
CB CC PLM sing 371 n n 
CB HB1 PLM sing 372 n n 
CB HB2 PLM sing 373 n n 
CC CD PLM sing 374 n n 
CC HC1 PLM sing 375 n n 
CC HC2 PLM sing 376 n n 
CD CE PLM sing 377 n n 
CD HD1 PLM sing 378 n n 
CD HD2 PLM sing 379 n n 
CE CF PLM sing 380 n n 
CE HE1 PLM sing 381 n n 
CE HE2 PLM sing 382 n n 
CF CG PLM sing 383 n n 
CF HF1 PLM sing 384 n n 
CF HF2 PLM sing 385 n n 
CG HG1 PLM sing 386 n n 
CG HG2 PLM sing 387 n n 
CG HG3 PLM sing 388 n n 
#
_atom_sites.entry_id                     8HKJ 
_atom_sites.fract_transf_matrix[1][1]    0.01035 
_atom_sites.fract_transf_matrix[1][2]    -0.000911 
_atom_sites.fract_transf_matrix[1][3]    -0.001886 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007963 
_atom_sites.fract_transf_matrix[2][3]    -0.000344 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007198 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 HEM A 1 501 501 HEM HEM ? 
N 3 PLM A 1 502 8 PLM PLM ? 
O 2 HEM B 1 501 501 HEM HEM ? 
P 3 PLM B 1 502 6 PLM PLM ? 
Q 2 HEM C 1 501 501 HEM HEM ? 
R 3 PLM C 1 502 4 PLM PLM ? 
S 2 HEM D 1 501 501 HEM HEM ? 
T 3 PLM D 1 502 2 PLM PLM ? 
U 3 PLM D 1 503 3 PLM PLM ? 
V 2 HEM E 1 501 501 HEM HEM ? 
W 3 PLM E 1 502 12 PLM PLM ? 
X 2 HEM F 1 501 501 HEM HEM ? 
Y 2 HEM G 1 501 501 HEM HEM ? 
Z 3 PLM G 1 502 7 PLM PLM ? 
AA 2 HEM H 1 501 501 HEM HEM ? 
BA 3 PLM H 1 502 11 PLM PLM ? 
CA 2 HEM I 1 501 501 HEM HEM ? 
DA 3 PLM I 1 502 5 PLM PLM ? 
EA 2 HEM J 1 501 501 HEM HEM ? 
FA 3 PLM J 1 502 9 PLM PLM ? 
GA 2 HEM K 1 501 501 HEM HEM ? 
HA 3 PLM K 1 502 1 PLM PLM ? 
IA 2 HEM L 1 501 501 HEM HEM ? 
JA 3 PLM L 1 502 10 PLM PLM ? 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLM . . . N 3 8.152 -26.743 -6.429 1 54.59 ? C1 PLM 502 A 1 
HETATM 2 O O1 PLM . . . N 3 9.313 -26.574 -6.882 1 56.79 ? O1 PLM 502 A 1 
HETATM 3 O O2 PLM . . . N 3 7.74 -27.627 -5.625 1 51.38 ? O2 PLM 502 A 1 
HETATM 4 C C2 PLM . . . N 3 7.101 -25.693 -6.939 1 52.78 ? C2 PLM 502 A 1 
HETATM 5 C C3 PLM . . . N 3 5.72 -25.834 -6.334 1 56.67 ? C3 PLM 502 A 1 
HETATM 6 C C4 PLM . . . N 3 5.058 -27.169 -6.67 1 64.01 ? C4 PLM 502 A 1 
HETATM 7 C C5 PLM . . . N 3 4.197 -27.751 -5.538 1 61.41 ? C5 PLM 502 A 1 
HETATM 8 C C6 PLM . . . N 3 4.383 -27.109 -4.162 1 51.68 ? C6 PLM 502 A 1 
HETATM 9 C C7 PLM . . . N 3 3.119 -27.2 -3.301 1 52.58 ? C7 PLM 502 A 1 
HETATM 10 C C8 PLM . . . N 3 1.99 -26.299 -3.776 1 57.45 ? C8 PLM 502 A 1 
HETATM 11 C C9 PLM . . . N 3 2.47 -24.89 -4.116 1 62.31 ? C9 PLM 502 A 1 
HETATM 12 C CA PLM . . . N 3 1.477 -24.1 -4.953 1 59.87 ? CA PLM 502 A 1 
HETATM 13 C CB PLM . . . N 3 0.378 -23.462 -4.119 1 53.72 ? CB PLM 502 A 1 
HETATM 14 C CC PLM . . . N 3 0.112 -21.991 -4.459 1 46.99 ? CC PLM 502 A 1 
HETATM 15 C CD PLM . . . N 3 -1.375 -21.688 -4.608 1 40.84 ? CD PLM 502 A 1 
HETATM 16 C CE PLM . . . N 3 -1.715 -20.545 -5.57 1 41.11 ? CE PLM 502 A 1 
HETATM 17 C CF PLM . . . N 3 -3.183 -20.578 -6.02 1 44.64 ? CF PLM 502 A 1 
HETATM 18 C CG PLM . . . N 3 -3.549 -19.476 -7.02 1 53.52 ? CG PLM 502 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           18 
#