data_8HKS # _model_server_result.job_id 9y2CwQ6Yn1dFuHBsq9awHg _model_server_result.datetime_utc '2024-11-08 19:19:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":602}' # _entry.id 8HKS # _exptl.entry_id 8HKS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.44 _cell.angle_gamma 90 _cell.entry_id 8HKS _cell.length_a 81.006 _cell.length_b 86.333 _cell.length_c 103.619 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HKS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,U 1 1 B,H,I,J,K,L,M,V 2 1 C,N,O,P,W 3 1 D,Q,R,S,T,X 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 N N N ? 2 O N N ? 2 Q N N ? 2 R N N ? 2 S N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 170 n n C1 C2 GOL sing 171 n n C1 H11 GOL sing 172 n n C1 H12 GOL sing 173 n n O1 HO1 GOL sing 174 n n C2 O2 GOL sing 175 n n C2 C3 GOL sing 176 n n C2 H2 GOL sing 177 n n O2 HO2 GOL sing 178 n n C3 O3 GOL sing 179 n n C3 H31 GOL sing 180 n n C3 H32 GOL sing 181 n n O3 HO3 GOL sing 182 n n # _atom_sites.entry_id 8HKS _atom_sites.fract_transf_matrix[1][1] 0.012345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005098 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 601 601 GOL GLO . F 2 GOL A 1 602 602 GOL GLO . G 3 DS9 A 1 603 3 DS9 LIG . H 2 GOL B 1 601 601 GOL GLO . I 2 GOL B 1 602 602 GOL GLO . J 2 GOL B 1 603 603 GOL GLO . K 2 GOL B 1 604 604 GOL GLO . L 2 GOL B 1 605 605 GOL GLO . M 3 DS9 B 1 606 1 DS9 LIG . N 2 GOL C 1 601 601 GOL GLO . O 2 GOL C 1 602 602 GOL GLO . P 3 DS9 C 1 603 2 DS9 LIG . Q 2 GOL D 1 601 601 GOL GLO . R 2 GOL D 1 602 602 GOL GLO . S 2 GOL D 1 603 603 GOL GLO . T 3 DS9 D 1 604 4 DS9 LIG . U 4 HOH A 1 701 65 HOH HOH . U 4 HOH A 2 702 15 HOH HOH . U 4 HOH A 3 703 20 HOH HOH . U 4 HOH A 4 704 41 HOH HOH . U 4 HOH A 5 705 102 HOH HOH . U 4 HOH A 6 706 35 HOH HOH . U 4 HOH A 7 707 55 HOH HOH . U 4 HOH A 8 708 22 HOH HOH . U 4 HOH A 9 709 6 HOH HOH . U 4 HOH A 10 710 53 HOH HOH . U 4 HOH A 11 711 52 HOH HOH . U 4 HOH A 12 712 150 HOH HOH . U 4 HOH A 13 713 64 HOH HOH . U 4 HOH A 14 714 126 HOH HOH . U 4 HOH A 15 715 12 HOH HOH . U 4 HOH A 16 716 94 HOH HOH . U 4 HOH A 17 717 57 HOH HOH . U 4 HOH A 18 718 132 HOH HOH . U 4 HOH A 19 719 59 HOH HOH . U 4 HOH A 20 720 5 HOH HOH . U 4 HOH A 21 721 90 HOH HOH . U 4 HOH A 22 722 113 HOH HOH . U 4 HOH A 23 723 83 HOH HOH . U 4 HOH A 24 724 56 HOH HOH . U 4 HOH A 25 725 19 HOH HOH . U 4 HOH A 26 726 122 HOH HOH . U 4 HOH A 27 727 92 HOH HOH . U 4 HOH A 28 728 140 HOH HOH . U 4 HOH A 29 729 2 HOH HOH . U 4 HOH A 30 730 125 HOH HOH . U 4 HOH A 31 731 137 HOH HOH . U 4 HOH A 32 732 45 HOH HOH . U 4 HOH A 33 733 109 HOH HOH . U 4 HOH A 34 734 133 HOH HOH . U 4 HOH A 35 735 135 HOH HOH . U 4 HOH A 36 736 127 HOH HOH . U 4 HOH A 37 737 144 HOH HOH . U 4 HOH A 38 738 142 HOH HOH . V 4 HOH B 1 701 110 HOH HOH . V 4 HOH B 2 702 129 HOH HOH . V 4 HOH B 3 703 143 HOH HOH . V 4 HOH B 4 704 30 HOH HOH . V 4 HOH B 5 705 116 HOH HOH . V 4 HOH B 6 706 37 HOH HOH . V 4 HOH B 7 707 151 HOH HOH . V 4 HOH B 8 708 7 HOH HOH . V 4 HOH B 9 709 1 HOH HOH . V 4 HOH B 10 710 70 HOH HOH . V 4 HOH B 11 711 130 HOH HOH . V 4 HOH B 12 712 124 HOH HOH . V 4 HOH B 13 713 3 HOH HOH . V 4 HOH B 14 714 77 HOH HOH . V 4 HOH B 15 715 47 HOH HOH . V 4 HOH B 16 716 95 HOH HOH . V 4 HOH B 17 717 46 HOH HOH . V 4 HOH B 18 718 9 HOH HOH . V 4 HOH B 19 719 43 HOH HOH . V 4 HOH B 20 720 96 HOH HOH . V 4 HOH B 21 721 78 HOH HOH . V 4 HOH B 22 722 25 HOH HOH . V 4 HOH B 23 723 86 HOH HOH . V 4 HOH B 24 724 14 HOH HOH . V 4 HOH B 25 725 51 HOH HOH . V 4 HOH B 26 726 24 HOH HOH . V 4 HOH B 27 727 27 HOH HOH . V 4 HOH B 28 728 69 HOH HOH . V 4 HOH B 29 729 31 HOH HOH . V 4 HOH B 30 730 154 HOH HOH . V 4 HOH B 31 731 105 HOH HOH . V 4 HOH B 32 732 89 HOH HOH . V 4 HOH B 33 733 128 HOH HOH . V 4 HOH B 34 734 106 HOH HOH . V 4 HOH B 35 735 80 HOH HOH . V 4 HOH B 36 736 63 HOH HOH . V 4 HOH B 37 737 33 HOH HOH . V 4 HOH B 38 738 98 HOH HOH . V 4 HOH B 39 739 54 HOH HOH . V 4 HOH B 40 740 16 HOH HOH . V 4 HOH B 41 741 120 HOH HOH . V 4 HOH B 42 742 107 HOH HOH . V 4 HOH B 43 743 115 HOH HOH . V 4 HOH B 44 744 58 HOH HOH . V 4 HOH B 45 745 18 HOH HOH . V 4 HOH B 46 746 149 HOH HOH . W 4 HOH C 1 701 50 HOH HOH . W 4 HOH C 2 702 48 HOH HOH . W 4 HOH C 3 703 84 HOH HOH . W 4 HOH C 4 704 91 HOH HOH . W 4 HOH C 5 705 114 HOH HOH . W 4 HOH C 6 706 66 HOH HOH . W 4 HOH C 7 707 21 HOH HOH . W 4 HOH C 8 708 141 HOH HOH . W 4 HOH C 9 709 29 HOH HOH . W 4 HOH C 10 710 60 HOH HOH . W 4 HOH C 11 711 68 HOH HOH . W 4 HOH C 12 712 26 HOH HOH . W 4 HOH C 13 713 11 HOH HOH . W 4 HOH C 14 714 156 HOH HOH . W 4 HOH C 15 715 157 HOH HOH . W 4 HOH C 16 716 67 HOH HOH . W 4 HOH C 17 717 28 HOH HOH . W 4 HOH C 18 718 139 HOH HOH . W 4 HOH C 19 719 49 HOH HOH . W 4 HOH C 20 720 32 HOH HOH . W 4 HOH C 21 721 38 HOH HOH . W 4 HOH C 22 722 103 HOH HOH . W 4 HOH C 23 723 146 HOH HOH . W 4 HOH C 24 724 17 HOH HOH . W 4 HOH C 25 725 75 HOH HOH . W 4 HOH C 26 726 145 HOH HOH . W 4 HOH C 27 727 99 HOH HOH . W 4 HOH C 28 728 74 HOH HOH . W 4 HOH C 29 729 44 HOH HOH . W 4 HOH C 30 730 118 HOH HOH . W 4 HOH C 31 731 71 HOH HOH . W 4 HOH C 32 732 87 HOH HOH . W 4 HOH C 33 733 39 HOH HOH . W 4 HOH C 34 734 152 HOH HOH . W 4 HOH C 35 735 42 HOH HOH . W 4 HOH C 36 736 23 HOH HOH . W 4 HOH C 37 737 123 HOH HOH . W 4 HOH C 38 738 138 HOH HOH . W 4 HOH C 39 739 134 HOH HOH . X 4 HOH D 1 701 119 HOH HOH . X 4 HOH D 2 702 88 HOH HOH . X 4 HOH D 3 703 82 HOH HOH . X 4 HOH D 4 704 155 HOH HOH . X 4 HOH D 5 705 93 HOH HOH . X 4 HOH D 6 706 85 HOH HOH . X 4 HOH D 7 707 34 HOH HOH . X 4 HOH D 8 708 62 HOH HOH . X 4 HOH D 9 709 4 HOH HOH . X 4 HOH D 10 710 36 HOH HOH . X 4 HOH D 11 711 13 HOH HOH . X 4 HOH D 12 712 136 HOH HOH . X 4 HOH D 13 713 61 HOH HOH . X 4 HOH D 14 714 10 HOH HOH . X 4 HOH D 15 715 8 HOH HOH . X 4 HOH D 16 716 112 HOH HOH . X 4 HOH D 17 717 104 HOH HOH . X 4 HOH D 18 718 117 HOH HOH . X 4 HOH D 19 719 153 HOH HOH . X 4 HOH D 20 720 40 HOH HOH . X 4 HOH D 21 721 111 HOH HOH . X 4 HOH D 22 722 97 HOH HOH . X 4 HOH D 23 723 76 HOH HOH . X 4 HOH D 24 724 72 HOH HOH . X 4 HOH D 25 725 73 HOH HOH . X 4 HOH D 26 726 81 HOH HOH . X 4 HOH D 27 727 108 HOH HOH . X 4 HOH D 28 728 131 HOH HOH . X 4 HOH D 29 729 121 HOH HOH . X 4 HOH D 30 730 148 HOH HOH . X 4 HOH D 31 731 100 HOH HOH . X 4 HOH D 32 732 101 HOH HOH . X 4 HOH D 33 733 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 2 -20.29 46.936 10.162 1 30.59 ? C1 GOL 602 B 1 HETATM 2 O O1 GOL . . . I 2 -21.188 46.422 9.148 1 28.77 ? O1 GOL 602 B 1 HETATM 3 C C2 GOL . . . I 2 -19.097 46.028 10.171 1 34.59 ? C2 GOL 602 B 1 HETATM 4 O O2 GOL . . . I 2 -17.961 46.842 10.573 1 32.5 ? O2 GOL 602 B 1 HETATM 5 C C3 GOL . . . I 2 -19.232 44.923 11.174 1 28.79 ? C3 GOL 602 B 1 HETATM 6 O O3 GOL . . . I 2 -18.055 44.089 11.04 1 24.72 ? O3 GOL 602 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #