data_8HKS
#
_model_server_result.job_id            JUOmnbdCji0vp1oeQYUArA 
_model_server_result.datetime_utc      '2024-11-27 15:26:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hks 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":603}' 
#
_entry.id    8HKS 
#
_exptl.entry_id    8HKS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.44 
_cell.angle_gamma         90 
_cell.entry_id            8HKS 
_cell.length_a            81.006 
_cell.length_b            86.333 
_cell.length_c            103.619 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HKS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,U 1 1 
B,H,I,J,K,L,M,V 2 1 
C,N,O,P,W 3 1 
D,Q,R,S,T,X 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 N N N 
? 2 O N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 170 n n 
C1 C2 GOL sing 171 n n 
C1 H11 GOL sing 172 n n 
C1 H12 GOL sing 173 n n 
O1 HO1 GOL sing 174 n n 
C2 O2 GOL sing 175 n n 
C2 C3 GOL sing 176 n n 
C2 H2 GOL sing 177 n n 
O2 HO2 GOL sing 178 n n 
C3 O3 GOL sing 179 n n 
C3 H31 GOL sing 180 n n 
C3 H32 GOL sing 181 n n 
O3 HO3 GOL sing 182 n n 
#
_atom_sites.entry_id                     8HKS 
_atom_sites.fract_transf_matrix[1][1]    0.012345 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005098 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011583 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010441 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 601 601 GOL GLO . 
F 2 GOL A 1 602 602 GOL GLO . 
G 3 DS9 A 1 603 3 DS9 LIG . 
H 2 GOL B 1 601 601 GOL GLO . 
I 2 GOL B 1 602 602 GOL GLO . 
J 2 GOL B 1 603 603 GOL GLO . 
K 2 GOL B 1 604 604 GOL GLO . 
L 2 GOL B 1 605 605 GOL GLO . 
M 3 DS9 B 1 606 1 DS9 LIG . 
N 2 GOL C 1 601 601 GOL GLO . 
O 2 GOL C 1 602 602 GOL GLO . 
P 3 DS9 C 1 603 2 DS9 LIG . 
Q 2 GOL D 1 601 601 GOL GLO . 
R 2 GOL D 1 602 602 GOL GLO . 
S 2 GOL D 1 603 603 GOL GLO . 
T 3 DS9 D 1 604 4 DS9 LIG . 
U 4 HOH A 1 701 65 HOH HOH . 
U 4 HOH A 2 702 15 HOH HOH . 
U 4 HOH A 3 703 20 HOH HOH . 
U 4 HOH A 4 704 41 HOH HOH . 
U 4 HOH A 5 705 102 HOH HOH . 
U 4 HOH A 6 706 35 HOH HOH . 
U 4 HOH A 7 707 55 HOH HOH . 
U 4 HOH A 8 708 22 HOH HOH . 
U 4 HOH A 9 709 6 HOH HOH . 
U 4 HOH A 10 710 53 HOH HOH . 
U 4 HOH A 11 711 52 HOH HOH . 
U 4 HOH A 12 712 150 HOH HOH . 
U 4 HOH A 13 713 64 HOH HOH . 
U 4 HOH A 14 714 126 HOH HOH . 
U 4 HOH A 15 715 12 HOH HOH . 
U 4 HOH A 16 716 94 HOH HOH . 
U 4 HOH A 17 717 57 HOH HOH . 
U 4 HOH A 18 718 132 HOH HOH . 
U 4 HOH A 19 719 59 HOH HOH . 
U 4 HOH A 20 720 5 HOH HOH . 
U 4 HOH A 21 721 90 HOH HOH . 
U 4 HOH A 22 722 113 HOH HOH . 
U 4 HOH A 23 723 83 HOH HOH . 
U 4 HOH A 24 724 56 HOH HOH . 
U 4 HOH A 25 725 19 HOH HOH . 
U 4 HOH A 26 726 122 HOH HOH . 
U 4 HOH A 27 727 92 HOH HOH . 
U 4 HOH A 28 728 140 HOH HOH . 
U 4 HOH A 29 729 2 HOH HOH . 
U 4 HOH A 30 730 125 HOH HOH . 
U 4 HOH A 31 731 137 HOH HOH . 
U 4 HOH A 32 732 45 HOH HOH . 
U 4 HOH A 33 733 109 HOH HOH . 
U 4 HOH A 34 734 133 HOH HOH . 
U 4 HOH A 35 735 135 HOH HOH . 
U 4 HOH A 36 736 127 HOH HOH . 
U 4 HOH A 37 737 144 HOH HOH . 
U 4 HOH A 38 738 142 HOH HOH . 
V 4 HOH B 1 701 110 HOH HOH . 
V 4 HOH B 2 702 129 HOH HOH . 
V 4 HOH B 3 703 143 HOH HOH . 
V 4 HOH B 4 704 30 HOH HOH . 
V 4 HOH B 5 705 116 HOH HOH . 
V 4 HOH B 6 706 37 HOH HOH . 
V 4 HOH B 7 707 151 HOH HOH . 
V 4 HOH B 8 708 7 HOH HOH . 
V 4 HOH B 9 709 1 HOH HOH . 
V 4 HOH B 10 710 70 HOH HOH . 
V 4 HOH B 11 711 130 HOH HOH . 
V 4 HOH B 12 712 124 HOH HOH . 
V 4 HOH B 13 713 3 HOH HOH . 
V 4 HOH B 14 714 77 HOH HOH . 
V 4 HOH B 15 715 47 HOH HOH . 
V 4 HOH B 16 716 95 HOH HOH . 
V 4 HOH B 17 717 46 HOH HOH . 
V 4 HOH B 18 718 9 HOH HOH . 
V 4 HOH B 19 719 43 HOH HOH . 
V 4 HOH B 20 720 96 HOH HOH . 
V 4 HOH B 21 721 78 HOH HOH . 
V 4 HOH B 22 722 25 HOH HOH . 
V 4 HOH B 23 723 86 HOH HOH . 
V 4 HOH B 24 724 14 HOH HOH . 
V 4 HOH B 25 725 51 HOH HOH . 
V 4 HOH B 26 726 24 HOH HOH . 
V 4 HOH B 27 727 27 HOH HOH . 
V 4 HOH B 28 728 69 HOH HOH . 
V 4 HOH B 29 729 31 HOH HOH . 
V 4 HOH B 30 730 154 HOH HOH . 
V 4 HOH B 31 731 105 HOH HOH . 
V 4 HOH B 32 732 89 HOH HOH . 
V 4 HOH B 33 733 128 HOH HOH . 
V 4 HOH B 34 734 106 HOH HOH . 
V 4 HOH B 35 735 80 HOH HOH . 
V 4 HOH B 36 736 63 HOH HOH . 
V 4 HOH B 37 737 33 HOH HOH . 
V 4 HOH B 38 738 98 HOH HOH . 
V 4 HOH B 39 739 54 HOH HOH . 
V 4 HOH B 40 740 16 HOH HOH . 
V 4 HOH B 41 741 120 HOH HOH . 
V 4 HOH B 42 742 107 HOH HOH . 
V 4 HOH B 43 743 115 HOH HOH . 
V 4 HOH B 44 744 58 HOH HOH . 
V 4 HOH B 45 745 18 HOH HOH . 
V 4 HOH B 46 746 149 HOH HOH . 
W 4 HOH C 1 701 50 HOH HOH . 
W 4 HOH C 2 702 48 HOH HOH . 
W 4 HOH C 3 703 84 HOH HOH . 
W 4 HOH C 4 704 91 HOH HOH . 
W 4 HOH C 5 705 114 HOH HOH . 
W 4 HOH C 6 706 66 HOH HOH . 
W 4 HOH C 7 707 21 HOH HOH . 
W 4 HOH C 8 708 141 HOH HOH . 
W 4 HOH C 9 709 29 HOH HOH . 
W 4 HOH C 10 710 60 HOH HOH . 
W 4 HOH C 11 711 68 HOH HOH . 
W 4 HOH C 12 712 26 HOH HOH . 
W 4 HOH C 13 713 11 HOH HOH . 
W 4 HOH C 14 714 156 HOH HOH . 
W 4 HOH C 15 715 157 HOH HOH . 
W 4 HOH C 16 716 67 HOH HOH . 
W 4 HOH C 17 717 28 HOH HOH . 
W 4 HOH C 18 718 139 HOH HOH . 
W 4 HOH C 19 719 49 HOH HOH . 
W 4 HOH C 20 720 32 HOH HOH . 
W 4 HOH C 21 721 38 HOH HOH . 
W 4 HOH C 22 722 103 HOH HOH . 
W 4 HOH C 23 723 146 HOH HOH . 
W 4 HOH C 24 724 17 HOH HOH . 
W 4 HOH C 25 725 75 HOH HOH . 
W 4 HOH C 26 726 145 HOH HOH . 
W 4 HOH C 27 727 99 HOH HOH . 
W 4 HOH C 28 728 74 HOH HOH . 
W 4 HOH C 29 729 44 HOH HOH . 
W 4 HOH C 30 730 118 HOH HOH . 
W 4 HOH C 31 731 71 HOH HOH . 
W 4 HOH C 32 732 87 HOH HOH . 
W 4 HOH C 33 733 39 HOH HOH . 
W 4 HOH C 34 734 152 HOH HOH . 
W 4 HOH C 35 735 42 HOH HOH . 
W 4 HOH C 36 736 23 HOH HOH . 
W 4 HOH C 37 737 123 HOH HOH . 
W 4 HOH C 38 738 138 HOH HOH . 
W 4 HOH C 39 739 134 HOH HOH . 
X 4 HOH D 1 701 119 HOH HOH . 
X 4 HOH D 2 702 88 HOH HOH . 
X 4 HOH D 3 703 82 HOH HOH . 
X 4 HOH D 4 704 155 HOH HOH . 
X 4 HOH D 5 705 93 HOH HOH . 
X 4 HOH D 6 706 85 HOH HOH . 
X 4 HOH D 7 707 34 HOH HOH . 
X 4 HOH D 8 708 62 HOH HOH . 
X 4 HOH D 9 709 4 HOH HOH . 
X 4 HOH D 10 710 36 HOH HOH . 
X 4 HOH D 11 711 13 HOH HOH . 
X 4 HOH D 12 712 136 HOH HOH . 
X 4 HOH D 13 713 61 HOH HOH . 
X 4 HOH D 14 714 10 HOH HOH . 
X 4 HOH D 15 715 8 HOH HOH . 
X 4 HOH D 16 716 112 HOH HOH . 
X 4 HOH D 17 717 104 HOH HOH . 
X 4 HOH D 18 718 117 HOH HOH . 
X 4 HOH D 19 719 153 HOH HOH . 
X 4 HOH D 20 720 40 HOH HOH . 
X 4 HOH D 21 721 111 HOH HOH . 
X 4 HOH D 22 722 97 HOH HOH . 
X 4 HOH D 23 723 76 HOH HOH . 
X 4 HOH D 24 724 72 HOH HOH . 
X 4 HOH D 25 725 73 HOH HOH . 
X 4 HOH D 26 726 81 HOH HOH . 
X 4 HOH D 27 727 108 HOH HOH . 
X 4 HOH D 28 728 131 HOH HOH . 
X 4 HOH D 29 729 121 HOH HOH . 
X 4 HOH D 30 730 148 HOH HOH . 
X 4 HOH D 31 731 100 HOH HOH . 
X 4 HOH D 32 732 101 HOH HOH . 
X 4 HOH D 33 733 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 2 -11.969 19.86 18.096 1 38.64 ? C1 GOL 603 B 1 
HETATM 2 O O1 GOL . . . J 2 -12.239 19.053 19.268 1 40.8 ? O1 GOL 603 B 1 
HETATM 3 C C2 GOL . . . J 2 -11.967 21.285 18.564 1 42.9 ? C2 GOL 603 B 1 
HETATM 4 O O2 GOL . . . J 2 -10.876 21.404 19.521 1 38.44 ? O2 GOL 603 B 1 
HETATM 5 C C3 GOL . . . J 2 -13.239 21.658 19.263 1 36.33 ? C3 GOL 603 B 1 
HETATM 6 O O3 GOL . . . J 2 -14.065 22.362 18.302 1 30.63 ? O3 GOL 603 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    86 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#