data_8HL6 # _model_server_result.job_id ZNV7CKLGkDoTzYnbsQnzfg _model_server_result.datetime_utc '2024-11-07 13:26:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hl6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8HL6 # _exptl.entry_id 8HL6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8HL6 _cell.length_a 58.17 _cell.length_b 58.17 _cell.length_c 129.291 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HL6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 8HL6 _atom_sites.fract_transf_matrix[1][1] 0.017191 _atom_sites.fract_transf_matrix[1][2] 0.009925 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019851 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 301 301 SAM SAM . C 3 HOH A 1 401 68 HOH HOH . C 3 HOH A 2 402 64 HOH HOH . C 3 HOH A 3 403 70 HOH HOH . C 3 HOH A 4 404 79 HOH HOH . C 3 HOH A 5 405 82 HOH HOH . C 3 HOH A 6 406 4 HOH HOH . C 3 HOH A 7 407 3 HOH HOH . C 3 HOH A 8 408 22 HOH HOH . C 3 HOH A 9 409 11 HOH HOH . C 3 HOH A 10 410 87 HOH HOH . C 3 HOH A 11 411 41 HOH HOH . C 3 HOH A 12 412 9 HOH HOH . C 3 HOH A 13 413 67 HOH HOH . C 3 HOH A 14 414 36 HOH HOH . C 3 HOH A 15 415 48 HOH HOH . C 3 HOH A 16 416 91 HOH HOH . C 3 HOH A 17 417 102 HOH HOH . C 3 HOH A 18 418 15 HOH HOH . C 3 HOH A 19 419 1 HOH HOH . C 3 HOH A 20 420 18 HOH HOH . C 3 HOH A 21 421 14 HOH HOH . C 3 HOH A 22 422 37 HOH HOH . C 3 HOH A 23 423 24 HOH HOH . C 3 HOH A 24 424 59 HOH HOH . C 3 HOH A 25 425 28 HOH HOH . C 3 HOH A 26 426 12 HOH HOH . C 3 HOH A 27 427 6 HOH HOH . C 3 HOH A 28 428 17 HOH HOH . C 3 HOH A 29 429 95 HOH HOH . C 3 HOH A 30 430 13 HOH HOH . C 3 HOH A 31 431 26 HOH HOH . C 3 HOH A 32 432 7 HOH HOH . C 3 HOH A 33 433 10 HOH HOH . C 3 HOH A 34 434 29 HOH HOH . C 3 HOH A 35 435 50 HOH HOH . C 3 HOH A 36 436 2 HOH HOH . C 3 HOH A 37 437 39 HOH HOH . C 3 HOH A 38 438 101 HOH HOH . C 3 HOH A 39 439 47 HOH HOH . C 3 HOH A 40 440 66 HOH HOH . C 3 HOH A 41 441 27 HOH HOH . C 3 HOH A 42 442 5 HOH HOH . C 3 HOH A 43 443 78 HOH HOH . C 3 HOH A 44 444 52 HOH HOH . C 3 HOH A 45 445 30 HOH HOH . C 3 HOH A 46 446 49 HOH HOH . C 3 HOH A 47 447 88 HOH HOH . C 3 HOH A 48 448 25 HOH HOH . C 3 HOH A 49 449 45 HOH HOH . C 3 HOH A 50 450 65 HOH HOH . C 3 HOH A 51 451 33 HOH HOH . C 3 HOH A 52 452 8 HOH HOH . C 3 HOH A 53 453 51 HOH HOH . C 3 HOH A 54 454 60 HOH HOH . C 3 HOH A 55 455 16 HOH HOH . C 3 HOH A 56 456 97 HOH HOH . C 3 HOH A 57 457 98 HOH HOH . C 3 HOH A 58 458 76 HOH HOH . C 3 HOH A 59 459 100 HOH HOH . C 3 HOH A 60 460 23 HOH HOH . C 3 HOH A 61 461 19 HOH HOH . C 3 HOH A 62 462 106 HOH HOH . C 3 HOH A 63 463 35 HOH HOH . C 3 HOH A 64 464 73 HOH HOH . C 3 HOH A 65 465 93 HOH HOH . C 3 HOH A 66 466 90 HOH HOH . C 3 HOH A 67 467 85 HOH HOH . C 3 HOH A 68 468 94 HOH HOH . C 3 HOH A 69 469 108 HOH HOH . C 3 HOH A 70 470 96 HOH HOH . C 3 HOH A 71 471 42 HOH HOH . C 3 HOH A 72 472 83 HOH HOH . C 3 HOH A 73 473 77 HOH HOH . C 3 HOH A 74 474 31 HOH HOH . C 3 HOH A 75 475 61 HOH HOH . C 3 HOH A 76 476 53 HOH HOH . C 3 HOH A 77 477 57 HOH HOH . C 3 HOH A 78 478 104 HOH HOH . C 3 HOH A 79 479 40 HOH HOH . C 3 HOH A 80 480 55 HOH HOH . C 3 HOH A 81 481 72 HOH HOH . C 3 HOH A 82 482 75 HOH HOH . C 3 HOH A 83 483 62 HOH HOH . C 3 HOH A 84 484 84 HOH HOH . C 3 HOH A 85 485 69 HOH HOH . C 3 HOH A 86 486 71 HOH HOH . C 3 HOH A 87 487 92 HOH HOH . C 3 HOH A 88 488 103 HOH HOH . C 3 HOH A 89 489 99 HOH HOH . C 3 HOH A 90 490 89 HOH HOH . C 3 HOH A 91 491 32 HOH HOH . C 3 HOH A 92 492 81 HOH HOH . C 3 HOH A 93 493 46 HOH HOH . C 3 HOH A 94 494 38 HOH HOH . C 3 HOH A 95 495 107 HOH HOH . C 3 HOH A 96 496 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 -27.314 1.198 6.62 1 35.54 ? N SAM 301 A 1 HETATM 2 C CA SAM . . . B 2 -27.219 -0.258 6.601 1 31.53 ? CA SAM 301 A 1 HETATM 3 C C SAM . . . B 2 -25.915 -0.742 5.978 1 43.97 ? C SAM 301 A 1 HETATM 4 O O SAM . . . B 2 -25.291 -0.027 5.172 1 38.63 ? O SAM 301 A 1 HETATM 5 O OXT SAM . . . B 2 -25.48 -1.872 6.262 1 37.44 ? OXT SAM 301 A 1 HETATM 6 C CB SAM . . . B 2 -28.395 -0.857 5.834 1 30.64 ? CB SAM 301 A 1 HETATM 7 C CG SAM . . . B 2 -28.422 -0.526 4.333 1 36.55 ? CG SAM 301 A 1 HETATM 8 S SD SAM . . . B 2 -29.824 -1.3 3.488 1 41.69 ? SD SAM 301 A 1 HETATM 9 C CE SAM . . . B 2 -29.259 -1.3 1.755 1 37.18 ? CE SAM 301 A 1 HETATM 10 C C5' SAM . . . B 2 -31.03 0.061 3.545 1 34.61 ? C5' SAM 301 A 1 HETATM 11 C C4' SAM . . . B 2 -31.786 0.189 4.888 1 35.65 ? C4' SAM 301 A 1 HETATM 12 O O4' SAM . . . B 2 -32.747 1.232 4.765 1 35.96 ? O4' SAM 301 A 1 HETATM 13 C C3' SAM . . . B 2 -32.539 -1.084 5.294 1 37.29 ? C3' SAM 301 A 1 HETATM 14 O O3' SAM . . . B 2 -32.297 -1.405 6.659 1 37.45 ? O3' SAM 301 A 1 HETATM 15 C C2' SAM . . . B 2 -34.006 -0.737 5.137 1 42.26 ? C2' SAM 301 A 1 HETATM 16 O O2' SAM . . . B 2 -34.84 -1.404 6.079 1 33.95 ? O2' SAM 301 A 1 HETATM 17 C C1' SAM . . . B 2 -33.98 0.781 5.312 1 38.94 ? C1' SAM 301 A 1 HETATM 18 N N9 SAM . . . B 2 -35.14 1.44 4.678 1 39.15 ? N9 SAM 301 A 1 HETATM 19 C C8 SAM . . . B 2 -35.574 1.266 3.384 1 39.39 ? C8 SAM 301 A 1 HETATM 20 N N7 SAM . . . B 2 -36.667 2.049 3.201 1 43.28 ? N7 SAM 301 A 1 HETATM 21 C C5 SAM . . . B 2 -36.942 2.71 4.358 1 38.27 ? C5 SAM 301 A 1 HETATM 22 C C6 SAM . . . B 2 -37.935 3.622 4.714 1 39.54 ? C6 SAM 301 A 1 HETATM 23 N N6 SAM . . . B 2 -38.873 4.01 3.838 1 35.89 ? N6 SAM 301 A 1 HETATM 24 N N1 SAM . . . B 2 -37.937 4.135 5.998 1 34.67 ? N1 SAM 301 A 1 HETATM 25 C C2 SAM . . . B 2 -36.978 3.753 6.906 1 33.24 ? C2 SAM 301 A 1 HETATM 26 N N3 SAM . . . B 2 -36.005 2.843 6.546 1 33.15 ? N3 SAM 301 A 1 HETATM 27 C C4 SAM . . . B 2 -35.984 2.337 5.288 1 33.84 ? C4 SAM 301 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #