data_8HL7 # _model_server_result.job_id jGYEn12YBq_8DrHzIjZi7Q _model_server_result.datetime_utc '2024-11-07 11:16:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8HL7 # _exptl.entry_id 8HL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HL7 _cell.length_a 60.78 _cell.length_b 60.78 _cell.length_c 473.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLU 292 B GLU 314 1_555 B N M3L 293 B M3L 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C M3L 293 B M3L 315 1_555 B N THR 294 B THR 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8HL7 _atom_sites.fract_transf_matrix[1][1] 0.016453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 301 301 SAH SAH . D 4 GOL A 1 302 1 GOL GOL . E 4 GOL A 1 303 5 GOL GOL . F 5 FMT A 1 304 6 FMT FMT . G 6 ACT A 1 305 7 ACT ACT . H 7 ADP B 1 501 501 ADP ADP . I 5 FMT B 1 502 2 FMT FMT . J 4 GOL B 1 503 3 GOL GOL . K 8 EPE B 1 504 4 EPE EPE . L 9 HOH A 1 401 9 HOH HOH . L 9 HOH A 2 402 8 HOH HOH . M 9 HOH B 1 601 6 HOH HOH . M 9 HOH B 2 602 5 HOH HOH . M 9 HOH B 3 603 4 HOH HOH . M 9 HOH B 4 604 2 HOH HOH . M 9 HOH B 5 605 1 HOH HOH . M 9 HOH B 6 606 3 HOH HOH . M 9 HOH B 7 607 10 HOH HOH . M 9 HOH B 8 608 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 60.685 116.303 49.212 1 47.27 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . C 3 61.996 115.679 49.372 1 46.37 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . C 3 61.911 114.204 49.052 1 48.49 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . C 3 60.856 113.972 47.966 1 47.68 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . C 3 60.66 112.226 47.559 1 53.02 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . C 3 62.99 116.36 48.452 1 42.42 ? C SAH 301 A 1 HETATM 7 O O SAH . . . C 3 62.531 117.069 47.551 1 38.42 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . C 3 64.219 116.216 48.576 1 40.68 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . C 3 59.116 112.059 48.495 1 53.25 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . C 3 59.361 111.582 49.917 1 52.34 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . C 3 58.188 111.011 50.429 1 58.42 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . C 3 60.421 110.507 50.027 1 55.93 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . C 3 61.417 110.954 50.899 1 52.08 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . C 3 59.77 109.282 50.644 1 61.3 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . C 3 60.645 108.735 51.611 1 60.5 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . C 3 58.501 109.874 51.22 1 61.5 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . C 3 57.269 109.078 51.189 1 64.52 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . C 3 56.62 108.533 50.112 1 67.75 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . C 3 55.473 107.949 50.537 1 67.66 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . C 3 55.383 108.139 51.873 1 69.5 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . C 3 54.443 107.761 52.821 1 70.77 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . C 3 53.36 107.064 52.466 1 74.02 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . C 3 54.639 108.123 54.143 1 69.02 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . C 3 55.749 108.842 54.529 1 65.74 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . C 3 56.676 109.209 53.588 1 65.7 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . C 3 56.495 108.86 52.288 1 68.53 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 118 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #