data_8HL7 # _model_server_result.job_id RL0z11Xw1GYuheLYQbc0hQ _model_server_result.datetime_utc '2024-11-07 11:32:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 8HL7 # _exptl.entry_id 8HL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HL7 _cell.length_a 60.78 _cell.length_b 60.78 _cell.length_c 473.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLU 292 B GLU 314 1_555 B N M3L 293 B M3L 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C M3L 293 B M3L 315 1_555 B N THR 294 B THR 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8HL7 _atom_sites.fract_transf_matrix[1][1] 0.016453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 301 301 SAH SAH . D 4 GOL A 1 302 1 GOL GOL . E 4 GOL A 1 303 5 GOL GOL . F 5 FMT A 1 304 6 FMT FMT . G 6 ACT A 1 305 7 ACT ACT . H 7 ADP B 1 501 501 ADP ADP . I 5 FMT B 1 502 2 FMT FMT . J 4 GOL B 1 503 3 GOL GOL . K 8 EPE B 1 504 4 EPE EPE . L 9 HOH A 1 401 9 HOH HOH . L 9 HOH A 2 402 8 HOH HOH . M 9 HOH B 1 601 6 HOH HOH . M 9 HOH B 2 602 5 HOH HOH . M 9 HOH B 3 603 4 HOH HOH . M 9 HOH B 4 604 2 HOH HOH . M 9 HOH B 5 605 1 HOH HOH . M 9 HOH B 6 606 3 HOH HOH . M 9 HOH B 7 607 10 HOH HOH . M 9 HOH B 8 608 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . H 7 77.615 111.514 16.534 1 62.97 ? PB ADP 501 B 1 HETATM 2 O O1B ADP . . . H 7 76.533 112.466 16.035 1 56.54 ? O1B ADP 501 B 1 HETATM 3 O O2B ADP . . . H 7 78.225 111.893 17.889 1 63.14 ? O2B ADP 501 B 1 HETATM 4 O O3B ADP . . . H 7 77.189 110.043 16.452 1 58.14 ? O3B ADP 501 B 1 HETATM 5 P PA ADP . . . H 7 80.402 111.364 15.669 1 68.46 ? PA ADP 501 B 1 HETATM 6 O O1A ADP . . . H 7 81.271 112.548 16.08 1 60.71 ? O1A ADP 501 B 1 HETATM 7 O O2A ADP . . . H 7 80.423 110.059 16.45 1 69.65 ? O2A ADP 501 B 1 HETATM 8 O O3A ADP . . . H 7 78.832 111.778 15.467 1 61.36 ? O3A ADP 501 B 1 HETATM 9 O O5' ADP . . . H 7 80.86 111.024 14.155 1 66.36 ? O5' ADP 501 B 1 HETATM 10 C C5' ADP . . . H 7 81.698 109.893 13.888 1 65.69 ? C5' ADP 501 B 1 HETATM 11 C C4' ADP . . . H 7 82.627 110.096 12.681 1 66.98 ? C4' ADP 501 B 1 HETATM 12 O O4' ADP . . . H 7 81.956 110.439 11.446 1 64.91 ? O4' ADP 501 B 1 HETATM 13 C C3' ADP . . . H 7 83.671 111.185 12.912 1 67.47 ? C3' ADP 501 B 1 HETATM 14 O O3' ADP . . . H 7 84.785 110.699 13.688 1 65.16 ? O3' ADP 501 B 1 HETATM 15 C C2' ADP . . . H 7 84.018 111.616 11.49 1 66.41 ? C2' ADP 501 B 1 HETATM 16 O O2' ADP . . . H 7 85.059 110.77 10.975 1 59.56 ? O2' ADP 501 B 1 HETATM 17 C C1' ADP . . . H 7 82.735 111.388 10.685 1 64.03 ? C1' ADP 501 B 1 HETATM 18 N N9 ADP . . . H 7 81.905 112.63 10.53 1 65.17 ? N9 ADP 501 B 1 HETATM 19 C C8 ADP . . . H 7 80.593 112.696 10.871 1 64.32 ? C8 ADP 501 B 1 HETATM 20 N N7 ADP . . . H 7 80.049 113.924 10.638 1 64.98 ? N7 ADP 501 B 1 HETATM 21 C C5 ADP . . . H 7 81.028 114.688 10.12 1 65.56 ? C5 ADP 501 B 1 HETATM 22 C C6 ADP . . . H 7 81.099 116.091 9.653 1 67.22 ? C6 ADP 501 B 1 HETATM 23 N N6 ADP . . . H 7 80.006 116.9 9.711 1 65.9 ? N6 ADP 501 B 1 HETATM 24 N N1 ADP . . . H 7 82.299 116.51 9.19 1 69.82 ? N1 ADP 501 B 1 HETATM 25 C C2 ADP . . . H 7 83.374 115.689 9.152 1 67.21 ? C2 ADP 501 B 1 HETATM 26 N N3 ADP . . . H 7 83.384 114.408 9.554 1 62.33 ? N3 ADP 501 B 1 HETATM 27 C C4 ADP . . . H 7 82.25 113.844 10.042 1 64.92 ? C4 ADP 501 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #