data_8HLP # _model_server_result.job_id XJXnHQxaiY63IbOi5E0yYQ _model_server_result.datetime_utc '2024-11-14 22:59:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hlp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1102}' # _entry.id 8HLP # _exptl.entry_id 8HLP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HLP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HLP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 Q N N ? 7 R N N ? 7 S N N ? 7 T N N ? 7 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 298 A CYS 298 1_555 A SG CYS 326 A CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 316 A CYS 316 1_555 A SG CYS 332 A CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 1058 A CYS 1078 1_555 A SG CYS 1069 A CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 1431 A CYS 1479 1_555 A SG CYS 1447 A CYS 1495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 303 F CYS 303 1_555 B SG CYS 1044 F CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 354 F CYS 354 1_555 B SG CYS 1059 F CYS 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 B SG CYS 904 F CYS 904 1_555 B SG CYS 974 F CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B ND2 ASN 92 F ASN 92 1_555 S C1 NAG . F NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B ND2 ASN 184 F ASN 184 1_555 T C1 NAG . F NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 B ND2 ASN 324 F ASN 324 1_555 R C1 NAG . F NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 B ND2 ASN 468 F ASN 468 1_555 Q C1 NAG . F NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 B ND2 ASN 895 F ASN 895 1_555 U C1 NAG . F NAG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? metalc ? metalc1 A OE2 GLU 363 A GLU 363 1_555 O CA CA . A CA 2312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 A OE1 GLU 363 A GLU 363 1_555 P CA CA . A CA 2313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 A O GLU 706 A GLU 706 1_555 P CA CA . A CA 2313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc4 A OE1 GLU 1115 A GLU 1135 1_555 P CA CA . A CA 2313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc5 A OE2 GLU 1115 A GLU 1135 1_555 P CA CA . A CA 2313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 367 n n C1 O1 NAG sing 368 n n C1 O5 NAG sing 369 n n C1 H1 NAG sing 370 n n C2 C3 NAG sing 371 n n C2 N2 NAG sing 372 n n C2 H2 NAG sing 373 n n C3 C4 NAG sing 374 n n C3 O3 NAG sing 375 n n C3 H3 NAG sing 376 n n C4 C5 NAG sing 377 n n C4 O4 NAG sing 378 n n C4 H4 NAG sing 379 n n C5 C6 NAG sing 380 n n C5 O5 NAG sing 381 n n C5 H5 NAG sing 382 n n C6 O6 NAG sing 383 n n C6 H61 NAG sing 384 n n C6 H62 NAG sing 385 n n C7 C8 NAG sing 386 n n C7 N2 NAG sing 387 n n C7 O7 NAG doub 388 n n C8 H81 NAG sing 389 n n C8 H82 NAG sing 390 n n C8 H83 NAG sing 391 n n N2 HN2 NAG sing 392 n n O1 HO1 NAG sing 393 n n O3 HO3 NAG sing 394 n n O4 HO4 NAG sing 395 n n O6 HO6 NAG sing 396 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8HLP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 R16 A 1 2301 1701 R16 R16 . E 4 R16 A 1 2302 1704 R16 R16 . F 4 R16 A 1 2303 1707 R16 R16 . G 4 R16 A 1 2304 1708 R16 R16 . H 4 R16 A 1 2305 1710 R16 R16 . I 5 3PE A 1 2306 1711 3PE 3PE . J 4 R16 A 1 2307 1713 R16 R16 . K 4 R16 A 1 2308 1714 R16 R16 . L 4 R16 A 1 2309 1715 R16 R16 . M 4 R16 A 1 2310 1716 R16 R16 . N 5 3PE A 1 2311 1725 3PE 3PE . O 6 CA A 1 2312 1401 CA CA . P 6 CA A 1 2313 1402 CA CA . Q 7 NAG F 1 1101 1376 NAG NAG . R 7 NAG F 1 1102 1383 NAG NAG . S 7 NAG F 1 1103 1403 NAG NAG . T 7 NAG F 1 1104 1404 NAG NAG . U 7 NAG F 1 1105 1405 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . R 7 184.313 184.412 207.999 1 77.53 ? C1 NAG 1102 F 1 HETATM 2 C C2 NAG . . . R 7 184.564 183.541 209.223 1 77.53 ? C2 NAG 1102 F 1 HETATM 3 C C3 NAG . . . R 7 183.371 183.559 210.166 1 77.53 ? C3 NAG 1102 F 1 HETATM 4 C C4 NAG . . . R 7 182.91 184.985 210.43 1 77.53 ? C4 NAG 1102 F 1 HETATM 5 C C5 NAG . . . R 7 182.748 185.751 209.125 1 77.53 ? C5 NAG 1102 F 1 HETATM 6 C C6 NAG . . . R 7 182.341 187.194 209.39 1 77.53 ? C6 NAG 1102 F 1 HETATM 7 C C7 NAG . . . R 7 186.055 181.789 208.469 1 77.53 ? C7 NAG 1102 F 1 HETATM 8 C C8 NAG . . . R 7 186.128 180.539 207.644 1 77.53 ? C8 NAG 1102 F 1 HETATM 9 N N2 NAG . . . R 7 184.833 182.178 208.814 1 77.53 ? N2 NAG 1102 F 1 HETATM 10 O O3 NAG . . . R 7 183.738 182.94 211.402 1 77.53 ? O3 NAG 1102 F 1 HETATM 11 O O4 NAG . . . R 7 181.66 184.957 211.126 1 77.53 ? O4 NAG 1102 F 1 HETATM 12 O O5 NAG . . . R 7 183.98 185.731 208.414 1 77.53 ? O5 NAG 1102 F 1 HETATM 13 O O6 NAG . . . R 7 180.961 187.233 209.768 1 77.53 ? O6 NAG 1102 F 1 HETATM 14 O O7 NAG . . . R 7 187.05 182.414 208.794 1 77.53 ? O7 NAG 1102 F 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #