data_8HLQ
#
_model_server_result.job_id            0FGAMItRO9vJR1OT4Ecv0w 
_model_server_result.datetime_utc      '2025-02-17 01:59:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hlq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    8HLQ 
#
_exptl.entry_id    8HLQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              320.388 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.49 
_cell.angle_gamma         90 
_cell.entry_id            8HLQ 
_cell.length_a            41.431 
_cell.length_b            88.089 
_cell.length_c            95.731 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HLQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
_chem_comp.formula           'C19 H20 N4 O' 
_chem_comp.formula_weight    320.388 
_chem_comp.id                3JD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Niraparib 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC CAI 3JD doub 1 n y 
CAC CAD 3JD sing 2 n y 
CAI CAU 3JD sing 3 n y 
CAD CAT 3JD doub 4 n y 
CAU CAJ 3JD doub 5 n y 
CAU CAV 3JD sing 6 n y 
CAJ NAX 3JD sing 7 n y 
CAT CAV 3JD sing 8 n y 
CAT CAQ 3JD sing 9 n n 
CAV NAO 3JD doub 10 n y 
OAB CAQ 3JD doub 11 n n 
NAX NAO 3JD sing 12 n y 
NAX CAS 3JD sing 13 n n 
CAQ NAA 3JD sing 14 n n 
CAH CAS 3JD doub 15 n y 
CAH CAF 3JD sing 16 n y 
CAS CAG 3JD sing 17 n y 
CAF CAR 3JD doub 18 n y 
CAG CAE 3JD doub 19 n y 
CAR CAE 3JD sing 20 n y 
CAR CAW 3JD sing 21 n n 
CAW CAM 3JD sing 22 n n 
CAW CAN 3JD sing 23 n n 
CAM CAK 3JD sing 24 n n 
CAN NAP 3JD sing 25 n n 
NAP CAL 3JD sing 26 n n 
CAK CAL 3JD sing 27 n n 
CAM H1 3JD sing 28 n n 
CAM H2 3JD sing 29 n n 
CAK H3 3JD sing 30 n n 
CAK H4 3JD sing 31 n n 
CAL H5 3JD sing 32 n n 
CAL H6 3JD sing 33 n n 
NAP H7 3JD sing 34 n n 
CAN H9 3JD sing 35 n n 
CAN H10 3JD sing 36 n n 
CAW H11 3JD sing 37 n n 
CAF H12 3JD sing 38 n n 
CAH H13 3JD sing 39 n n 
CAE H14 3JD sing 40 n n 
CAG H15 3JD sing 41 n n 
CAJ H16 3JD sing 42 n n 
CAI H17 3JD sing 43 n n 
CAC H18 3JD sing 44 n n 
CAD H19 3JD sing 45 n n 
NAA H20 3JD sing 46 n n 
NAA H21 3JD sing 47 n n 
#
_atom_sites.entry_id                     8HLQ 
_atom_sites.fract_transf_matrix[1][1]    0.024137 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000206 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011352 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010446 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 601 601 GOL GOL . 
D 3 3JD A 1 602 602 3JD 3JD . 
E 2 GOL B 1 601 601 GOL GOL . 
F 2 GOL B 1 602 602 GOL GOL . 
G 3 3JD B 1 603 603 3JD 3JD . 
H 4 HOH A 1 701 701 HOH HOH . 
H 4 HOH A 2 702 702 HOH HOH . 
H 4 HOH A 3 703 703 HOH HOH . 
H 4 HOH A 4 704 704 HOH HOH . 
H 4 HOH A 5 705 705 HOH HOH . 
H 4 HOH A 6 706 706 HOH HOH . 
I 4 HOH B 1 701 701 HOH HOH . 
I 4 HOH B 2 702 702 HOH HOH . 
I 4 HOH B 3 703 703 HOH HOH . 
I 4 HOH B 4 704 704 HOH HOH . 
I 4 HOH B 5 705 705 HOH HOH . 
I 4 HOH B 6 706 706 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAM 3JD . A . D 3 7.172 -2.054 43.537 0.5 52.55 ? CAM 3JD 602 A 1 
HETATM 2 C CAM 3JD . B . D 3 9.214 -1.046 43.368 0.5 52.55 ? CAM 3JD 602 A 1 
HETATM 3 C CAK 3JD . A . D 3 7.914 -3.289 44.052 0.5 55.4 ? CAK 3JD 602 A 1 
HETATM 4 C CAK 3JD . B . D 3 9.54 -2.346 42.642 0.5 55.4 ? CAK 3JD 602 A 1 
HETATM 5 C CAL 3JD . A . D 3 9.188 -3.508 43.244 0.5 53.42 ? CAL 3JD 602 A 1 
HETATM 6 C CAL 3JD . B . D 3 8.996 -3.528 43.415 0.5 53.42 ? CAL 3JD 602 A 1 
HETATM 7 N NAP 3JD . A . D 3 10.097 -2.383 43.491 0.5 54.89 ? NAP 3JD 602 A 1 
HETATM 8 N NAP 3JD . B . D 3 7.618 -3.307 43.868 0.5 54.89 ? NAP 3JD 602 A 1 
HETATM 9 C CAN 3JD . A . D 3 9.478 -1.086 43.179 0.5 53.76 ? CAN 3JD 602 A 1 
HETATM 10 C CAN 3JD . B . D 3 7.009 -2.185 43.147 0.5 53.76 ? CAN 3JD 602 A 1 
HETATM 11 C CAW 3JD . A . D 3 8.062 -1.206 42.604 0.5 54.35 ? CAW 3JD 602 A 1 
HETATM 12 C CAW 3JD . B . D 3 7.701 -0.886 43.524 0.5 54.35 ? CAW 3JD 602 A 1 
HETATM 13 C CAR 3JD . A . D 3 7.424 0.105 42.181 0.5 51.73 ? CAR 3JD 602 A 1 
HETATM 14 C CAR 3JD . B . D 3 7.164 0.303 42.759 0.5 51.73 ? CAR 3JD 602 A 1 
HETATM 15 C CAF 3JD . A . D 3 7.298 0.3 40.805 0.5 52.42 ? CAF 3JD 602 A 1 
HETATM 16 C CAF 3JD . B . D 3 6.583 1.373 43.422 0.5 52.42 ? CAF 3JD 602 A 1 
HETATM 17 C CAH 3JD . A . D 3 6.738 1.448 40.283 0.5 48.97 ? CAH 3JD 602 A 1 
HETATM 18 C CAH 3JD . B . D 3 6.094 2.462 42.724 0.5 48.97 ? CAH 3JD 602 A 1 
HETATM 19 C CAE 3JD . A . D 3 6.969 1.116 43.033 0.5 49.08 ? CAE 3JD 602 A 1 
HETATM 20 C CAE 3JD . B . D 3 7.245 0.349 41.375 0.5 49.08 ? CAE 3JD 602 A 1 
HETATM 21 C CAG 3JD . A . D 3 6.401 2.285 42.523 0.5 51.24 ? CAG 3JD 602 A 1 
HETATM 22 C CAG 3JD . B . D 3 6.759 1.431 40.664 0.5 51.24 ? CAG 3JD 602 A 1 
HETATM 23 C CAS 3JD . A . D 3 6.296 2.44 41.144 0.5 49.21 ? CAS 3JD 602 A 1 
HETATM 24 C CAS 3JD . B . D 3 6.187 2.488 41.346 0.5 49.21 ? CAS 3JD 602 A 1 
HETATM 25 N NAX 3JD . A . D 3 5.727 3.602 40.544 0.5 48.08 ? NAX 3JD 602 A 1 
HETATM 26 N NAX 3JD . B . D 3 5.679 3.613 40.624 0.5 48.08 ? NAX 3JD 602 A 1 
HETATM 27 C CAJ 3JD . A . D 3 5.754 4.87 40.99 0.5 47.17 ? CAJ 3JD 602 A 1 
HETATM 28 C CAJ 3JD . B . D 3 5.744 4.934 40.949 0.5 47.17 ? CAJ 3JD 602 A 1 
HETATM 29 N NAO 3JD . A . D 3 5.088 3.453 39.372 0.5 48.91 ? NAO 3JD 602 A 1 
HETATM 30 N NAO 3JD . B . D 3 5.017 3.423 39.437 0.5 48.91 ? NAO 3JD 602 A 1 
HETATM 31 C CAV 3JD . A . D 3 4.673 4.68 39.045 0.5 45.35 ? CAV 3JD 602 A 1 
HETATM 32 C CAV 3JD . B . D 3 4.665 4.656 39.026 0.5 45.35 ? CAV 3JD 602 A 1 
HETATM 33 C CAU 3JD . A . D 3 5.068 5.627 40.038 0.5 45.1 ? CAU 3JD 602 A 1 
HETATM 34 C CAU 3JD . B . D 3 5.101 5.644 39.947 0.5 45.1 ? CAU 3JD 602 A 1 
HETATM 35 C CAI 3JD . A . D 3 4.737 6.996 39.908 0.5 42.87 ? CAI 3JD 602 A 1 
HETATM 36 C CAI 3JD . B . D 3 4.837 7.005 39.715 0.5 42.87 ? CAI 3JD 602 A 1 
HETATM 37 C CAC 3JD . A . D 3 4.031 7.38 38.8 0.5 44.73 ? CAC 3JD 602 A 1 
HETATM 38 C CAC 3JD . B . D 3 4.154 7.349 38.573 0.5 44.73 ? CAC 3JD 602 A 1 
HETATM 39 C CAD 3JD . A . D 3 3.637 6.438 37.811 0.5 43.3 ? CAD 3JD 602 A 1 
HETATM 40 C CAD 3JD . B . D 3 3.724 6.388 37.665 0.5 43.3 ? CAD 3JD 602 A 1 
HETATM 41 C CAT 3JD . A . D 3 3.933 5.1 37.896 0.5 45.16 ? CAT 3JD 602 A 1 
HETATM 42 C CAT 3JD . B . D 3 3.959 5.036 37.857 0.5 45.16 ? CAT 3JD 602 A 1 
HETATM 43 C CAQ 3JD . A . D 3 3.468 4.198 36.793 0.5 43.43 ? CAQ 3JD 602 A 1 
HETATM 44 C CAQ 3JD . B . D 3 3.478 4.049 36.843 0.5 43.43 ? CAQ 3JD 602 A 1 
HETATM 45 O OAB 3JD . A . D 3 2.903 4.655 35.797 0.5 37.08 ? OAB 3JD 602 A 1 
HETATM 46 O OAB 3JD . B . D 3 2.931 4.44 35.816 0.5 37.08 ? OAB 3JD 602 A 1 
HETATM 47 N NAA 3JD . A . D 3 3.695 2.883 36.935 0.5 43.86 ? NAA 3JD 602 A 1 
HETATM 48 N NAA 3JD . B . D 3 3.675 2.763 37.09 0.5 43.86 ? NAA 3JD 602 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#