data_8HLY # _model_server_result.job_id 4hXlUL9dNlMqsN_Mt4j6eA _model_server_result.datetime_utc '2024-11-24 16:15:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8HLY # _exptl.entry_id 8HLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HLY _cell.length_a 33.043 _cell.length_b 84.763 _cell.length_c 89.187 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 3 B LYS 23 1_555 G C 2OP . B 2OP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? metalc ? metalc1 A SG CYS 138 A CYS 256 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc2 A SG CYS 141 A CYS 259 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A SG CYS 162 A CYS 280 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc4 A SG CYS 165 A CYS 283 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 149 n n C1 C2 GOL sing 150 n n C1 H11 GOL sing 151 n n C1 H12 GOL sing 152 n n O1 HO1 GOL sing 153 n n C2 O2 GOL sing 154 n n C2 C3 GOL sing 155 n n C2 H2 GOL sing 156 n n O2 HO2 GOL sing 157 n n C3 O3 GOL sing 158 n n C3 H31 GOL sing 159 n n C3 H32 GOL sing 160 n n O3 HO3 GOL sing 161 n n # _atom_sites.entry_id 8HLY _atom_sites.fract_transf_matrix[1][1] 0.030264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 401 GOL GOL . D 4 EDO A 1 402 402 EDO EDO . E 5 ZN A 1 403 601 ZN ZN . F 3 GOL A 1 404 701 GOL GOL . G 6 2OP B 1 401 401 2OP LIG . H 3 GOL B 1 402 801 GOL GOL . I 7 HOH A 1 501 32 HOH HOH . I 7 HOH A 2 502 31 HOH HOH . I 7 HOH A 3 503 144 HOH HOH . I 7 HOH A 4 504 109 HOH HOH . I 7 HOH A 5 505 60 HOH HOH . I 7 HOH A 6 506 140 HOH HOH . I 7 HOH A 7 507 11 HOH HOH . I 7 HOH A 8 508 20 HOH HOH . I 7 HOH A 9 509 46 HOH HOH . I 7 HOH A 10 510 83 HOH HOH . I 7 HOH A 11 511 47 HOH HOH . I 7 HOH A 12 512 122 HOH HOH . I 7 HOH A 13 513 55 HOH HOH . I 7 HOH A 14 514 119 HOH HOH . I 7 HOH A 15 515 10 HOH HOH . I 7 HOH A 16 516 24 HOH HOH . I 7 HOH A 17 517 108 HOH HOH . I 7 HOH A 18 518 103 HOH HOH . I 7 HOH A 19 519 72 HOH HOH . I 7 HOH A 20 520 2 HOH HOH . I 7 HOH A 21 521 1 HOH HOH . I 7 HOH A 22 522 22 HOH HOH . I 7 HOH A 23 523 106 HOH HOH . I 7 HOH A 24 524 27 HOH HOH . I 7 HOH A 25 525 52 HOH HOH . I 7 HOH A 26 526 165 HOH HOH . I 7 HOH A 27 527 43 HOH HOH . I 7 HOH A 28 528 7 HOH HOH . I 7 HOH A 29 529 8 HOH HOH . I 7 HOH A 30 530 90 HOH HOH . I 7 HOH A 31 531 53 HOH HOH . I 7 HOH A 32 532 129 HOH HOH . I 7 HOH A 33 533 41 HOH HOH . I 7 HOH A 34 534 48 HOH HOH . I 7 HOH A 35 535 56 HOH HOH . I 7 HOH A 36 536 23 HOH HOH . I 7 HOH A 37 537 128 HOH HOH . I 7 HOH A 38 538 62 HOH HOH . I 7 HOH A 39 539 145 HOH HOH . I 7 HOH A 40 540 98 HOH HOH . I 7 HOH A 41 541 17 HOH HOH . I 7 HOH A 42 542 40 HOH HOH . I 7 HOH A 43 543 125 HOH HOH . I 7 HOH A 44 544 26 HOH HOH . I 7 HOH A 45 545 6 HOH HOH . I 7 HOH A 46 546 54 HOH HOH . I 7 HOH A 47 547 61 HOH HOH . I 7 HOH A 48 548 13 HOH HOH . I 7 HOH A 49 549 21 HOH HOH . I 7 HOH A 50 550 12 HOH HOH . I 7 HOH A 51 551 34 HOH HOH . I 7 HOH A 52 552 80 HOH HOH . I 7 HOH A 53 553 4 HOH HOH . I 7 HOH A 54 554 110 HOH HOH . I 7 HOH A 55 555 89 HOH HOH . I 7 HOH A 56 556 45 HOH HOH . I 7 HOH A 57 557 71 HOH HOH . I 7 HOH A 58 558 30 HOH HOH . I 7 HOH A 59 559 97 HOH HOH . I 7 HOH A 60 560 49 HOH HOH . I 7 HOH A 61 561 124 HOH HOH . I 7 HOH A 62 562 5 HOH HOH . I 7 HOH A 63 563 64 HOH HOH . I 7 HOH A 64 564 167 HOH HOH . I 7 HOH A 65 565 9 HOH HOH . I 7 HOH A 66 566 138 HOH HOH . I 7 HOH A 67 567 3 HOH HOH . I 7 HOH A 68 568 146 HOH HOH . I 7 HOH A 69 569 29 HOH HOH . I 7 HOH A 70 570 105 HOH HOH . I 7 HOH A 71 571 115 HOH HOH . I 7 HOH A 72 572 58 HOH HOH . I 7 HOH A 73 573 59 HOH HOH . I 7 HOH A 74 574 94 HOH HOH . I 7 HOH A 75 575 93 HOH HOH . I 7 HOH A 76 576 74 HOH HOH . I 7 HOH A 77 577 63 HOH HOH . I 7 HOH A 78 578 87 HOH HOH . I 7 HOH A 79 579 104 HOH HOH . I 7 HOH A 80 580 133 HOH HOH . I 7 HOH A 81 581 33 HOH HOH . I 7 HOH A 82 582 121 HOH HOH . I 7 HOH A 83 583 70 HOH HOH . I 7 HOH A 84 584 42 HOH HOH . I 7 HOH A 85 585 75 HOH HOH . I 7 HOH A 86 586 28 HOH HOH . I 7 HOH A 87 587 44 HOH HOH . I 7 HOH A 88 588 100 HOH HOH . I 7 HOH A 89 589 120 HOH HOH . I 7 HOH A 90 590 170 HOH HOH . I 7 HOH A 91 591 85 HOH HOH . I 7 HOH A 92 592 35 HOH HOH . I 7 HOH A 93 593 73 HOH HOH . I 7 HOH A 94 594 39 HOH HOH . I 7 HOH A 95 595 19 HOH HOH . I 7 HOH A 96 596 88 HOH HOH . I 7 HOH A 97 597 15 HOH HOH . I 7 HOH A 98 598 57 HOH HOH . I 7 HOH A 99 599 113 HOH HOH . I 7 HOH A 100 600 51 HOH HOH . I 7 HOH A 101 601 81 HOH HOH . I 7 HOH A 102 602 169 HOH HOH . I 7 HOH A 103 603 127 HOH HOH . I 7 HOH A 104 604 36 HOH HOH . I 7 HOH A 105 605 50 HOH HOH . I 7 HOH A 106 606 91 HOH HOH . I 7 HOH A 107 607 16 HOH HOH . I 7 HOH A 108 608 143 HOH HOH . I 7 HOH A 109 609 25 HOH HOH . I 7 HOH A 110 610 139 HOH HOH . I 7 HOH A 111 611 66 HOH HOH . I 7 HOH A 112 612 130 HOH HOH . I 7 HOH A 113 613 107 HOH HOH . I 7 HOH A 114 614 14 HOH HOH . I 7 HOH A 115 615 84 HOH HOH . I 7 HOH A 116 616 92 HOH HOH . I 7 HOH A 117 617 99 HOH HOH . I 7 HOH A 118 618 126 HOH HOH . I 7 HOH A 119 619 123 HOH HOH . I 7 HOH A 120 620 86 HOH HOH . I 7 HOH A 121 621 117 HOH HOH . I 7 HOH A 122 622 161 HOH HOH . I 7 HOH A 123 623 154 HOH HOH . I 7 HOH A 124 624 112 HOH HOH . I 7 HOH A 125 625 101 HOH HOH . I 7 HOH A 126 626 82 HOH HOH . I 7 HOH A 127 627 166 HOH HOH . I 7 HOH A 128 628 142 HOH HOH . I 7 HOH A 129 629 134 HOH HOH . I 7 HOH A 130 630 150 HOH HOH . I 7 HOH A 131 631 163 HOH HOH . I 7 HOH A 132 632 131 HOH HOH . I 7 HOH A 133 633 160 HOH HOH . I 7 HOH A 134 634 158 HOH HOH . I 7 HOH A 135 635 37 HOH HOH . I 7 HOH A 136 636 157 HOH HOH . I 7 HOH A 137 637 18 HOH HOH . I 7 HOH A 138 638 156 HOH HOH . I 7 HOH A 139 639 136 HOH HOH . I 7 HOH A 140 640 164 HOH HOH . I 7 HOH A 141 641 65 HOH HOH . I 7 HOH A 142 642 111 HOH HOH . I 7 HOH A 143 643 95 HOH HOH . I 7 HOH A 144 644 159 HOH HOH . I 7 HOH A 145 645 118 HOH HOH . I 7 HOH A 146 646 67 HOH HOH . I 7 HOH A 147 647 132 HOH HOH . I 7 HOH A 148 648 135 HOH HOH . I 7 HOH A 149 649 96 HOH HOH . I 7 HOH A 150 650 168 HOH HOH . I 7 HOH A 151 651 162 HOH HOH . I 7 HOH A 152 652 114 HOH HOH . I 7 HOH A 153 653 68 HOH HOH . I 7 HOH A 154 654 141 HOH HOH . I 7 HOH A 155 655 77 HOH HOH . I 7 HOH A 156 656 76 HOH HOH . I 7 HOH A 157 657 78 HOH HOH . I 7 HOH A 158 658 79 HOH HOH . J 7 HOH B 1 501 137 HOH HOH . J 7 HOH B 2 502 102 HOH HOH . J 7 HOH B 3 503 155 HOH HOH . J 7 HOH B 4 504 116 HOH HOH . J 7 HOH B 5 505 38 HOH HOH . J 7 HOH B 6 506 147 HOH HOH . J 7 HOH B 7 507 69 HOH HOH . J 7 HOH B 8 508 148 HOH HOH . J 7 HOH B 9 509 151 HOH HOH . J 7 HOH B 10 510 152 HOH HOH . J 7 HOH B 11 511 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -11.319 -19.819 18.219 1 20.68 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . C 3 -10.449 -18.944 17.514 1 22.19 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . C 3 -10.984 -19.837 19.691 1 19.91 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . C 3 -11.115 -18.527 20.236 1 18.15 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . C 3 -11.839 -20.793 20.487 1 21.58 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . C 3 -11.682 -20.548 21.876 1 21.74 ? O3 GOL 401 A 1 HETATM 7 H H11 GOL . . . C 3 -11.234 -20.734 17.854 1 24.81 ? H11 GOL 401 A 1 HETATM 8 H H12 GOL . . . C 3 -12.253 -19.52 18.1 1 24.81 ? H12 GOL 401 A 1 HETATM 9 H HO1 GOL . . . C 3 -10.636 -18.983 16.694 1 26.62 ? HO1 GOL 401 A 1 HETATM 10 H H2 GOL . . . C 3 -10.044 -20.117 19.787 1 23.89 ? H2 GOL 401 A 1 HETATM 11 H HO2 GOL . . . C 3 -11.902 -18.26 20.076 1 21.78 ? HO2 GOL 401 A 1 HETATM 12 H H31 GOL . . . C 3 -11.576 -21.719 20.285 1 25.89 ? H31 GOL 401 A 1 HETATM 13 H H32 GOL . . . C 3 -12.786 -20.673 20.235 1 25.89 ? H32 GOL 401 A 1 HETATM 14 H HO3 GOL . . . C 3 -10.857 -20.441 22.032 1 26.09 ? HO3 GOL 401 A 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #