data_8HMA
#
_model_server_result.job_id            Ml3EvICB_hXz896HRSCGUw 
_model_server_result.datetime_utc      '2024-11-14 23:26:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hma 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1104}' 
#
_entry.id    8HMA 
#
_exptl.entry_id    8HMA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HMA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HMA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 K N N 
? 8 L N N 
? 8 M N N 
? 8 N N N 
? 8 P N N 
? 8 Q N N 
? 8 R N N 
? 8 S N N 
? 8 T N N 
? 8 U N N 
? 8 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 298 E CYS 298 1_555 A SG CYS 326 E CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 316 E CYS 316 1_555 A SG CYS 332 E CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 1058 E CYS 1078 1_555 A SG CYS 1069 E CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 1431 E CYS 1479 1_555 A SG CYS 1447 E CYS 1495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 C SG CYS 303 F CYS 303 1_555 C SG CYS 1044 F CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 C SG CYS 354 F CYS 354 1_555 C SG CYS 1059 F CYS 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 C SG CYS 404 F CYS 404 1_555 C SG CYS 1071 F CYS 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
disulf ? disulf8 C SG CYS 904 F CYS 904 1_555 C SG CYS 974 F CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 C ND2 ASN 92 F ASN 92 1_555 K C1 NAG . F NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 C ND2 ASN 184 F ASN 184 1_555 L C1 NAG . F NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 C ND2 ASN 324 F ASN 324 1_555 S C1 NAG . F NAG 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale4 C ND2 ASN 348 F ASN 348 1_555 V C1 NAG . F NAG 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale5 C ND2 ASN 468 F ASN 468 1_555 M C1 NAG . F NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale6 C ND2 ASN 613 F ASN 613 1_555 Q C1 NAG . F NAG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale7 C ND2 ASN 781 F ASN 781 1_555 T C1 NAG . F NAG 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale8 C ND2 ASN 888 F ASN 888 1_555 P C1 NAG . F NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale9 C ND2 ASN 895 F ASN 895 1_555 U C1 NAG . F NAG 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
metalc ? metalc1 A OE1 GLU 363 E GLU 363 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc2 A OE2 GLU 363 E GLU 363 1_555 J CA CA . E CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc3 A O GLU 706 E GLU 706 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? 
metalc ? metalc4 A OE1 GLU 1115 E GLU 1135 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc5 A OE2 GLU 1115 E GLU 1135 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc6 A OE2 GLU 1115 E GLU 1135 1_555 J CA CA . E CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc7 A O GLY 1415 E GLY 1463 1_555 J CA CA . E CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 483 n n 
C1 O1 NAG sing 484 n n 
C1 O5 NAG sing 485 n n 
C1 H1 NAG sing 486 n n 
C2 C3 NAG sing 487 n n 
C2 N2 NAG sing 488 n n 
C2 H2 NAG sing 489 n n 
C3 C4 NAG sing 490 n n 
C3 O3 NAG sing 491 n n 
C3 H3 NAG sing 492 n n 
C4 C5 NAG sing 493 n n 
C4 O4 NAG sing 494 n n 
C4 H4 NAG sing 495 n n 
C5 C6 NAG sing 496 n n 
C5 O5 NAG sing 497 n n 
C5 H5 NAG sing 498 n n 
C6 O6 NAG sing 499 n n 
C6 H61 NAG sing 500 n n 
C6 H62 NAG sing 501 n n 
C7 C8 NAG sing 502 n n 
C7 N2 NAG sing 503 n n 
C7 O7 NAG doub 504 n n 
C8 H81 NAG sing 505 n n 
C8 H82 NAG sing 506 n n 
C8 H83 NAG sing 507 n n 
N2 HN2 NAG sing 508 n n 
O1 HO1 NAG sing 509 n n 
O3 HO3 NAG sing 510 n n 
O4 HO4 NAG sing 511 n n 
O6 HO6 NAG sing 512 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8HMA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 R16 E 1 2301 1704 R16 R16 . 
E 5 3PE E 1 2302 1705 3PE 3PE . 
F 5 3PE E 1 2303 1711 3PE 3PE . 
G 6 A1AC9 E 1 2304 1718 A1AC9 TET . 
H 5 3PE E 1 2305 1720 3PE 3PE . 
I 7 CA E 1 2306 1726 CA CA . 
J 7 CA E 1 2307 1401 CA CA . 
K 8 NAG F 1 1101 1372 NAG NAG . 
L 8 NAG F 1 1102 1373 NAG NAG . 
M 8 NAG F 1 1103 1376 NAG NAG . 
N 8 NAG F 1 1104 1377 NAG NAG . 
O 9 BMA F 1 1105 1378 BMA BMA . 
P 8 NAG F 1 1106 1379 NAG NAG . 
Q 8 NAG F 1 1107 1380 NAG NAG . 
R 8 NAG F 1 1108 1381 NAG NAG . 
S 8 NAG F 1 1109 1383 NAG NAG . 
T 8 NAG F 1 1110 1393 NAG NAG . 
U 8 NAG F 1 1111 1404 NAG NAG . 
V 8 NAG F 1 1112 1405 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . N 8 209.627 198.501 168.373 1 92.11 ? C1 NAG 1104 F 1 
HETATM 2 C C2 NAG . . . N 8 209.163 199.566 167.384 1 92.11 ? C2 NAG 1104 F 1 
HETATM 3 C C3 NAG . . . N 8 207.723 199.972 167.68 1 92.11 ? C3 NAG 1104 F 1 
HETATM 4 C C4 NAG . . . N 8 206.823 198.745 167.734 1 92.11 ? C4 NAG 1104 F 1 
HETATM 5 C C5 NAG . . . N 8 207.392 197.719 168.709 1 92.11 ? C5 NAG 1104 F 1 
HETATM 6 C C6 NAG . . . N 8 206.614 196.425 168.727 1 92.11 ? C6 NAG 1104 F 1 
HETATM 7 C C7 NAG . . . N 8 211.349 200.663 167.182 1 92.11 ? C7 NAG 1104 F 1 
HETATM 8 C C8 NAG . . . N 8 212.096 201.96 167.265 1 92.11 ? C8 NAG 1104 F 1 
HETATM 9 N N2 NAG . . . N 8 210.036 200.728 167.423 1 92.11 ? N2 NAG 1104 F 1 
HETATM 10 O O3 NAG . . . N 8 207.268 200.865 166.67 1 92.11 ? O3 NAG 1104 F 1 
HETATM 11 O O4 NAG . . . N 8 205.516 199.118 168.154 1 92.11 ? O4 NAG 1104 F 1 
HETATM 12 O O5 NAG . . . N 8 208.736 197.389 168.333 1 92.11 ? O5 NAG 1104 F 1 
HETATM 13 O O6 NAG . . . N 8 207.21 195.449 167.884 1 92.11 ? O6 NAG 1104 F 1 
HETATM 14 O O7 NAG . . . N 8 211.909 199.606 166.909 1 92.11 ? O7 NAG 1104 F 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    49 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#