data_8HMA # _model_server_result.job_id BnINdIhgFIcGWvMYurJVMA _model_server_result.datetime_utc '2024-11-14 23:29:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1105}' # _entry.id 8HMA # _exptl.entry_id 8HMA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 180.156 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HMA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 298 E CYS 298 1_555 A SG CYS 326 E CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 316 E CYS 316 1_555 A SG CYS 332 E CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 1058 E CYS 1078 1_555 A SG CYS 1069 E CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 1431 E CYS 1479 1_555 A SG CYS 1447 E CYS 1495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 303 F CYS 303 1_555 C SG CYS 1044 F CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 354 F CYS 354 1_555 C SG CYS 1059 F CYS 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 C SG CYS 404 F CYS 404 1_555 C SG CYS 1071 F CYS 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? disulf ? disulf8 C SG CYS 904 F CYS 904 1_555 C SG CYS 974 F CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 C ND2 ASN 92 F ASN 92 1_555 K C1 NAG . F NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 C ND2 ASN 184 F ASN 184 1_555 L C1 NAG . F NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 C ND2 ASN 324 F ASN 324 1_555 S C1 NAG . F NAG 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 C ND2 ASN 348 F ASN 348 1_555 V C1 NAG . F NAG 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 C ND2 ASN 468 F ASN 468 1_555 M C1 NAG . F NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 C ND2 ASN 613 F ASN 613 1_555 Q C1 NAG . F NAG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 C ND2 ASN 781 F ASN 781 1_555 T C1 NAG . F NAG 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 C ND2 ASN 888 F ASN 888 1_555 P C1 NAG . F NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 C ND2 ASN 895 F ASN 895 1_555 U C1 NAG . F NAG 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A OE1 GLU 363 E GLU 363 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A OE2 GLU 363 E GLU 363 1_555 J CA CA . E CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 A O GLU 706 E GLU 706 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc4 A OE1 GLU 1115 E GLU 1135 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc5 A OE2 GLU 1115 E GLU 1135 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc6 A OE2 GLU 1115 E GLU 1135 1_555 J CA CA . E CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc7 A O GLY 1415 E GLY 1463 1_555 J CA CA . E CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BMA _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-mannopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BMA sing 294 n n C1 O1 BMA sing 295 n n C1 O5 BMA sing 296 n n C1 H1 BMA sing 297 n n C2 C3 BMA sing 298 n n C2 O2 BMA sing 299 n n C2 H2 BMA sing 300 n n C3 C4 BMA sing 301 n n C3 O3 BMA sing 302 n n C3 H3 BMA sing 303 n n C4 C5 BMA sing 304 n n C4 O4 BMA sing 305 n n C4 H4 BMA sing 306 n n C5 C6 BMA sing 307 n n C5 O5 BMA sing 308 n n C5 H5 BMA sing 309 n n C6 O6 BMA sing 310 n n C6 H61 BMA sing 311 n n C6 H62 BMA sing 312 n n O1 HO1 BMA sing 313 n n O2 HO2 BMA sing 314 n n O3 HO3 BMA sing 315 n n O4 HO4 BMA sing 316 n n O6 HO6 BMA sing 317 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BMA DManpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BMA b-D-mannopyranose 'COMMON NAME' GMML 1 BMA b-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BMA Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8HMA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 R16 E 1 2301 1704 R16 R16 . E 5 3PE E 1 2302 1705 3PE 3PE . F 5 3PE E 1 2303 1711 3PE 3PE . G 6 A1AC9 E 1 2304 1718 A1AC9 TET . H 5 3PE E 1 2305 1720 3PE 3PE . I 7 CA E 1 2306 1726 CA CA . J 7 CA E 1 2307 1401 CA CA . K 8 NAG F 1 1101 1372 NAG NAG . L 8 NAG F 1 1102 1373 NAG NAG . M 8 NAG F 1 1103 1376 NAG NAG . N 8 NAG F 1 1104 1377 NAG NAG . O 9 BMA F 1 1105 1378 BMA BMA . P 8 NAG F 1 1106 1379 NAG NAG . Q 8 NAG F 1 1107 1380 NAG NAG . R 8 NAG F 1 1108 1381 NAG NAG . S 8 NAG F 1 1109 1383 NAG NAG . T 8 NAG F 1 1110 1393 NAG NAG . U 8 NAG F 1 1111 1404 NAG NAG . V 8 NAG F 1 1112 1405 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BMA . . . O 9 207.01 196.684 164.808 1 89.86 ? C1 BMA 1105 F 1 HETATM 2 C C2 BMA . . . O 9 205.737 195.86 164.581 1 89.86 ? C2 BMA 1105 F 1 HETATM 3 C C3 BMA . . . O 9 205.962 194.852 163.457 1 89.86 ? C3 BMA 1105 F 1 HETATM 4 C C4 BMA . . . O 9 206.608 195.511 162.228 1 89.86 ? C4 BMA 1105 F 1 HETATM 5 C C5 BMA . . . O 9 207.875 196.268 162.644 1 89.86 ? C5 BMA 1105 F 1 HETATM 6 C C6 BMA . . . O 9 208.545 196.987 161.488 1 89.86 ? C6 BMA 1105 F 1 HETATM 7 O O2 BMA . . . O 9 204.667 196.696 164.172 1 89.86 ? O2 BMA 1105 F 1 HETATM 8 O O3 BMA . . . O 9 204.747 194.214 163.085 1 89.86 ? O3 BMA 1105 F 1 HETATM 9 O O4 BMA . . . O 9 206.944 194.521 161.27 1 89.86 ? O4 BMA 1105 F 1 HETATM 10 O O5 BMA . . . O 9 207.503 197.246 163.617 1 89.86 ? O5 BMA 1105 F 1 HETATM 11 O O6 BMA . . . O 9 209.684 197.673 161.989 1 89.86 ? O6 BMA 1105 F 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #