data_8HMA # _model_server_result.job_id zyJA9wAF9tNRdnb731l-sQ _model_server_result.datetime_utc '2025-01-18 08:11:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2301}' # _entry.id 8HMA # _exptl.entry_id 8HMA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 226.441 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXADECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HMA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 298 E CYS 298 1_555 A SG CYS 326 E CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 316 E CYS 316 1_555 A SG CYS 332 E CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 1058 E CYS 1078 1_555 A SG CYS 1069 E CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 1431 E CYS 1479 1_555 A SG CYS 1447 E CYS 1495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 303 F CYS 303 1_555 C SG CYS 1044 F CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 354 F CYS 354 1_555 C SG CYS 1059 F CYS 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 C SG CYS 404 F CYS 404 1_555 C SG CYS 1071 F CYS 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? disulf ? disulf8 C SG CYS 904 F CYS 904 1_555 C SG CYS 974 F CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 C ND2 ASN 92 F ASN 92 1_555 K C1 NAG . F NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 C ND2 ASN 184 F ASN 184 1_555 L C1 NAG . F NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 C ND2 ASN 324 F ASN 324 1_555 S C1 NAG . F NAG 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 C ND2 ASN 348 F ASN 348 1_555 V C1 NAG . F NAG 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 C ND2 ASN 468 F ASN 468 1_555 M C1 NAG . F NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 C ND2 ASN 613 F ASN 613 1_555 Q C1 NAG . F NAG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 C ND2 ASN 781 F ASN 781 1_555 T C1 NAG . F NAG 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 C ND2 ASN 888 F ASN 888 1_555 P C1 NAG . F NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 C ND2 ASN 895 F ASN 895 1_555 U C1 NAG . F NAG 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A OE1 GLU 363 E GLU 363 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A OE2 GLU 363 E GLU 363 1_555 J CA CA . E CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 A O GLU 706 E GLU 706 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc4 A OE1 GLU 1115 E GLU 1135 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc5 A OE2 GLU 1115 E GLU 1135 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc6 A OE2 GLU 1115 E GLU 1135 1_555 J CA CA . E CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc7 A O GLY 1415 E GLY 1463 1_555 J CA CA . E CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? # _chem_comp.formula 'C16 H34' _chem_comp.formula_weight 226.441 _chem_comp.id R16 _chem_comp.mon_nstd_flag . _chem_comp.name HEXADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 R16 sing 553 n n C27 H271 R16 sing 554 n n C27 H272 R16 sing 555 n n C27 H273 R16 sing 556 n n C28 C29 R16 sing 557 n n C28 H281 R16 sing 558 n n C28 H282 R16 sing 559 n n C29 C30 R16 sing 560 n n C29 H291 R16 sing 561 n n C29 H292 R16 sing 562 n n C30 C31 R16 sing 563 n n C30 H301 R16 sing 564 n n C30 H302 R16 sing 565 n n C31 C32 R16 sing 566 n n C31 H311 R16 sing 567 n n C31 H312 R16 sing 568 n n C32 C33 R16 sing 569 n n C32 H321 R16 sing 570 n n C32 H322 R16 sing 571 n n C33 C34 R16 sing 572 n n C33 H331 R16 sing 573 n n C33 H332 R16 sing 574 n n C34 C35 R16 sing 575 n n C34 H341 R16 sing 576 n n C34 H342 R16 sing 577 n n C35 C36 R16 sing 578 n n C35 H351 R16 sing 579 n n C35 H352 R16 sing 580 n n C36 C37 R16 sing 581 n n C36 H361 R16 sing 582 n n C36 H362 R16 sing 583 n n C37 C38 R16 sing 584 n n C37 H371 R16 sing 585 n n C37 H372 R16 sing 586 n n C38 C39 R16 sing 587 n n C38 H381 R16 sing 588 n n C38 H382 R16 sing 589 n n C39 C40 R16 sing 590 n n C39 H391 R16 sing 591 n n C39 H392 R16 sing 592 n n C40 C41 R16 sing 593 n n C40 H401 R16 sing 594 n n C40 H402 R16 sing 595 n n C41 C42 R16 sing 596 n n C41 H411 R16 sing 597 n n C41 H412 R16 sing 598 n n C42 H421 R16 sing 599 n n C42 H422 R16 sing 600 n n C42 H423 R16 sing 601 n n # _atom_sites.entry_id 8HMA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 R16 E 1 2301 1704 R16 R16 . E 5 3PE E 1 2302 1705 3PE 3PE . F 5 3PE E 1 2303 1711 3PE 3PE . G 6 A1AC9 E 1 2304 1718 A1AC9 TET . H 5 3PE E 1 2305 1720 3PE 3PE . I 7 CA E 1 2306 1726 CA CA . J 7 CA E 1 2307 1401 CA CA . K 8 NAG F 1 1101 1372 NAG NAG . L 8 NAG F 1 1102 1373 NAG NAG . M 8 NAG F 1 1103 1376 NAG NAG . N 8 NAG F 1 1104 1377 NAG NAG . O 9 BMA F 1 1105 1378 BMA BMA . P 8 NAG F 1 1106 1379 NAG NAG . Q 8 NAG F 1 1107 1380 NAG NAG . R 8 NAG F 1 1108 1381 NAG NAG . S 8 NAG F 1 1109 1383 NAG NAG . T 8 NAG F 1 1110 1393 NAG NAG . U 8 NAG F 1 1111 1404 NAG NAG . V 8 NAG F 1 1112 1405 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 R16 . . . D 4 179.134 173.92 142.414 1 71.46 ? C27 R16 2301 E 1 HETATM 2 C C28 R16 . . . D 4 179.914 172.666 142.728 1 71.46 ? C28 R16 2301 E 1 HETATM 3 C C29 R16 . . . D 4 180.826 172.778 143.925 1 71.46 ? C29 R16 2301 E 1 HETATM 4 C C30 R16 . . . D 4 182.127 173.475 143.626 1 71.46 ? C30 R16 2301 E 1 HETATM 5 C C31 R16 . . . D 4 182.776 174.139 144.813 1 71.46 ? C31 R16 2301 E 1 HETATM 6 C C32 R16 . . . D 4 183.313 173.211 145.875 1 71.46 ? C32 R16 2301 E 1 HETATM 7 C C33 R16 . . . D 4 184.645 172.588 145.539 1 71.46 ? C33 R16 2301 E 1 HETATM 8 C C34 R16 . . . D 4 185.827 173.511 145.374 1 71.46 ? C34 R16 2301 E 1 HETATM 9 C C35 R16 . . . D 4 186.132 174.372 146.575 1 71.46 ? C35 R16 2301 E 1 HETATM 10 C C36 R16 . . . D 4 186.711 173.646 147.759 1 71.46 ? C36 R16 2301 E 1 HETATM 11 C C37 R16 . . . D 4 188.119 173.157 147.527 1 71.46 ? C37 R16 2301 E 1 HETATM 12 C C38 R16 . . . D 4 188.913 172.908 148.785 1 71.46 ? C38 R16 2301 E 1 HETATM 13 C C39 R16 . . . D 4 190.387 172.697 148.545 1 71.46 ? C39 R16 2301 E 1 HETATM 14 C C40 R16 . . . D 4 191.251 172.899 149.764 1 71.46 ? C40 R16 2301 E 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #