data_8HMA # _model_server_result.job_id C5gsX99H56e99RoxMFgHrA _model_server_result.datetime_utc '2024-11-14 23:49:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2304}' # _entry.id 8HMA # _exptl.entry_id 8HMA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 620.734 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6,6',7,12-tetramethoxy-2,2'-dimethyl-1beta-3,4-didehydroberbaman" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HMA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 298 E CYS 298 1_555 A SG CYS 326 E CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 316 E CYS 316 1_555 A SG CYS 332 E CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 1058 E CYS 1078 1_555 A SG CYS 1069 E CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 1431 E CYS 1479 1_555 A SG CYS 1447 E CYS 1495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 303 F CYS 303 1_555 C SG CYS 1044 F CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 354 F CYS 354 1_555 C SG CYS 1059 F CYS 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 C SG CYS 404 F CYS 404 1_555 C SG CYS 1071 F CYS 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? disulf ? disulf8 C SG CYS 904 F CYS 904 1_555 C SG CYS 974 F CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 C ND2 ASN 92 F ASN 92 1_555 K C1 NAG . F NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 C ND2 ASN 184 F ASN 184 1_555 L C1 NAG . F NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 C ND2 ASN 324 F ASN 324 1_555 S C1 NAG . F NAG 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 C ND2 ASN 348 F ASN 348 1_555 V C1 NAG . F NAG 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 C ND2 ASN 468 F ASN 468 1_555 M C1 NAG . F NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 C ND2 ASN 613 F ASN 613 1_555 Q C1 NAG . F NAG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 C ND2 ASN 781 F ASN 781 1_555 T C1 NAG . F NAG 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 C ND2 ASN 888 F ASN 888 1_555 P C1 NAG . F NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 C ND2 ASN 895 F ASN 895 1_555 U C1 NAG . F NAG 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A OE1 GLU 363 E GLU 363 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A OE2 GLU 363 E GLU 363 1_555 J CA CA . E CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 A O GLU 706 E GLU 706 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc4 A OE1 GLU 1115 E GLU 1135 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc5 A OE2 GLU 1115 E GLU 1135 1_555 I CA CA . E CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc6 A OE2 GLU 1115 E GLU 1135 1_555 J CA CA . E CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc7 A O GLY 1415 E GLY 1463 1_555 J CA CA . E CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? # _chem_comp.formula 'C38 H40 N2 O6' _chem_comp.formula_weight 620.734 _chem_comp.id A1AC9 _chem_comp.mon_nstd_flag . _chem_comp.name "6,6',7,12-tetramethoxy-2,2'-dimethyl-1beta-3,4-didehydroberbaman" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C35 C40 A1AC9 doub 133 n y C35 C30 A1AC9 sing 134 n y C20 C30 A1AC9 sing 135 n n C20 C10 A1AC9 sing 136 n n C40 C39 A1AC9 sing 137 n y C30 C36 A1AC9 doub 138 n y C19 C17 A1AC9 sing 139 n n C19 C18 A1AC9 sing 140 n n C17 N08 A1AC9 sing 141 n n C39 O05 A1AC9 sing 142 n n C39 C41 A1AC9 doub 143 n y C36 C41 A1AC9 sing 144 n y N08 C10 A1AC9 sing 145 n n N08 C29 A1AC9 sing 146 n n C46 O06 A1AC9 sing 147 n n O06 C42 A1AC9 sing 148 n n O05 C37 A1AC9 sing 149 n n C18 C27 A1AC9 doub 150 n y C18 C15 A1AC9 sing 151 n y C10 C15 A1AC9 sing 152 n n C27 C32 A1AC9 sing 153 n y C15 C22 A1AC9 doub 154 n y C42 C37 A1AC9 doub 155 n y C42 C38 A1AC9 sing 156 n y C37 C33 A1AC9 sing 157 n y C44 O04 A1AC9 sing 158 n n C32 O04 A1AC9 sing 159 n n C32 C25 A1AC9 doub 160 n y C22 C25 A1AC9 sing 161 n y C38 C34 A1AC9 doub 162 n y C33 C26 A1AC9 doub 163 n y C25 O01 A1AC9 sing 164 n n C34 C26 A1AC9 sing 165 n y C26 C16 A1AC9 sing 166 n n C23 N07 A1AC9 sing 167 n n O01 C21 A1AC9 sing 168 n n C09 N07 A1AC9 sing 169 n n C09 C16 A1AC9 sing 170 n n C09 C11 A1AC9 sing 171 n n N07 C12 A1AC9 sing 172 n n C21 C11 A1AC9 doub 173 n y C21 C28 A1AC9 sing 174 n y C11 C13 A1AC9 sing 175 n y O02 C28 A1AC9 sing 176 n n O02 C43 A1AC9 sing 177 n n C28 C31 A1AC9 doub 178 n y C12 C14 A1AC9 doub 179 n n C13 C14 A1AC9 sing 180 n n C13 C24 A1AC9 doub 181 n y C45 O03 A1AC9 sing 182 n n C31 C24 A1AC9 sing 183 n y C31 O03 A1AC9 sing 184 n n C12 H1 A1AC9 sing 185 n n C10 H2 A1AC9 sing 186 n n C20 H3 A1AC9 sing 187 n n C20 H4 A1AC9 sing 188 n n C16 H5 A1AC9 sing 189 n n C16 H6 A1AC9 sing 190 n n C17 H7 A1AC9 sing 191 n n C17 H8 A1AC9 sing 192 n n C19 H9 A1AC9 sing 193 n n C19 H10 A1AC9 sing 194 n n C14 H11 A1AC9 sing 195 n n C22 H12 A1AC9 sing 196 n n C23 H13 A1AC9 sing 197 n n C23 H14 A1AC9 sing 198 n n C23 H15 A1AC9 sing 199 n n C24 H16 A1AC9 sing 200 n n C27 H17 A1AC9 sing 201 n n C29 H18 A1AC9 sing 202 n n C29 H19 A1AC9 sing 203 n n C29 H20 A1AC9 sing 204 n n C33 H21 A1AC9 sing 205 n n C34 H22 A1AC9 sing 206 n n C35 H23 A1AC9 sing 207 n n C36 H24 A1AC9 sing 208 n n C38 H25 A1AC9 sing 209 n n C40 H26 A1AC9 sing 210 n n C41 H27 A1AC9 sing 211 n n C43 H28 A1AC9 sing 212 n n C43 H29 A1AC9 sing 213 n n C43 H30 A1AC9 sing 214 n n C44 H31 A1AC9 sing 215 n n C44 H32 A1AC9 sing 216 n n C44 H33 A1AC9 sing 217 n n C45 H34 A1AC9 sing 218 n n C45 H35 A1AC9 sing 219 n n C45 H36 A1AC9 sing 220 n n C46 H37 A1AC9 sing 221 n n C46 H38 A1AC9 sing 222 n n C46 H39 A1AC9 sing 223 n n C09 H40 A1AC9 sing 224 n n # _atom_sites.entry_id 8HMA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 R16 E 1 2301 1704 R16 R16 . E 5 3PE E 1 2302 1705 3PE 3PE . F 5 3PE E 1 2303 1711 3PE 3PE . G 6 A1AC9 E 1 2304 1718 A1AC9 TET . H 5 3PE E 1 2305 1720 3PE 3PE . I 7 CA E 1 2306 1726 CA CA . J 7 CA E 1 2307 1401 CA CA . K 8 NAG F 1 1101 1372 NAG NAG . L 8 NAG F 1 1102 1373 NAG NAG . M 8 NAG F 1 1103 1376 NAG NAG . N 8 NAG F 1 1104 1377 NAG NAG . O 9 BMA F 1 1105 1378 BMA BMA . P 8 NAG F 1 1106 1379 NAG NAG . Q 8 NAG F 1 1107 1380 NAG NAG . R 8 NAG F 1 1108 1381 NAG NAG . S 8 NAG F 1 1109 1383 NAG NAG . T 8 NAG F 1 1110 1393 NAG NAG . U 8 NAG F 1 1111 1404 NAG NAG . V 8 NAG F 1 1112 1405 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 A1AC9 . . . G 6 159.662 163.563 163.02 1 73.27 ? C15 A1AC9 2304 E 1 HETATM 2 C C12 A1AC9 . . . G 6 166.752 163.338 167.254 1 73.27 ? C12 A1AC9 2304 E 1 HETATM 3 C C10 A1AC9 . . . G 6 158.469 162.818 162.541 1 73.27 ? C10 A1AC9 2304 E 1 HETATM 4 C C18 A1AC9 . . . G 6 159.9 164.632 162.511 1 73.27 ? C18 A1AC9 2304 E 1 HETATM 5 C C13 A1AC9 . . . G 6 164.786 164.129 167.675 1 73.27 ? C13 A1AC9 2304 E 1 HETATM 6 C C20 A1AC9 . . . G 6 158.874 162.01 161.277 1 73.27 ? C20 A1AC9 2304 E 1 HETATM 7 C C16 A1AC9 . . . G 6 164.346 161.081 166.312 1 73.27 ? C16 A1AC9 2304 E 1 HETATM 8 C C17 A1AC9 . . . G 6 157.74 165.105 161.941 1 73.27 ? C17 A1AC9 2304 E 1 HETATM 9 C C11 A1AC9 . . . G 6 164.191 163.5 166.785 1 73.27 ? C11 A1AC9 2304 E 1 HETATM 10 C C19 A1AC9 . . . G 6 159.27 165.3 161.618 1 73.27 ? C19 A1AC9 2304 E 1 HETATM 11 C C14 A1AC9 . . . G 6 165.921 164.124 168.127 1 73.27 ? C14 A1AC9 2304 E 1 HETATM 12 C C09 A1AC9 . . . G 6 164.949 162.401 165.979 1 73.27 ? C09 A1AC9 2304 E 1 HETATM 13 C C21 A1AC9 . . . G 6 162.839 163.737 166.475 1 73.27 ? C21 A1AC9 2304 E 1 HETATM 14 C C22 A1AC9 . . . G 6 160.489 162.996 164.018 1 73.27 ? C22 A1AC9 2304 E 1 HETATM 15 C C23 A1AC9 . . . G 6 167.035 162.563 165.317 1 73.27 ? C23 A1AC9 2304 E 1 HETATM 16 C C24 A1AC9 . . . G 6 164.009 165.132 168.378 1 73.27 ? C24 A1AC9 2304 E 1 HETATM 17 C C25 A1AC9 . . . G 6 161.554 163.616 164.458 1 73.27 ? C25 A1AC9 2304 E 1 HETATM 18 C C26 A1AC9 . . . G 6 164.684 160.066 165.22 1 73.27 ? C26 A1AC9 2304 E 1 HETATM 19 C C27 A1AC9 . . . G 6 161.08 165.32 163.009 1 73.27 ? C27 A1AC9 2304 E 1 HETATM 20 C C28 A1AC9 . . . G 6 162.141 164.648 167.129 1 73.27 ? C28 A1AC9 2304 E 1 HETATM 21 C C29 A1AC9 . . . G 6 156.539 163.648 163.005 1 73.27 ? C29 A1AC9 2304 E 1 HETATM 22 C C30 A1AC9 . . . G 6 160.029 161.044 161.56 1 73.27 ? C30 A1AC9 2304 E 1 HETATM 23 C C31 A1AC9 . . . G 6 162.706 165.342 168.062 1 73.27 ? C31 A1AC9 2304 E 1 HETATM 24 C C32 A1AC9 . . . G 6 161.864 164.768 163.966 1 73.27 ? C32 A1AC9 2304 E 1 HETATM 25 C C33 A1AC9 . . . G 6 163.738 159.698 164.279 1 73.27 ? C33 A1AC9 2304 E 1 HETATM 26 C C34 A1AC9 . . . G 6 165.954 159.517 165.184 1 73.27 ? C34 A1AC9 2304 E 1 HETATM 27 C C35 A1AC9 . . . G 6 161.328 161.371 161.196 1 73.27 ? C35 A1AC9 2304 E 1 HETATM 28 C C36 A1AC9 . . . G 6 159.781 159.831 162.175 1 73.27 ? C36 A1AC9 2304 E 1 HETATM 29 C C37 A1AC9 . . . G 6 164.065 158.779 163.296 1 73.27 ? C37 A1AC9 2304 E 1 HETATM 30 C C38 A1AC9 . . . G 6 166.282 158.596 164.203 1 73.27 ? C38 A1AC9 2304 E 1 HETATM 31 C C39 A1AC9 . . . G 6 162.118 159.284 162.074 1 73.27 ? C39 A1AC9 2304 E 1 HETATM 32 C C40 A1AC9 . . . G 6 162.368 160.492 161.446 1 73.27 ? C40 A1AC9 2304 E 1 HETATM 33 C C41 A1AC9 . . . G 6 160.823 158.954 162.426 1 73.27 ? C41 A1AC9 2304 E 1 HETATM 34 C C42 A1AC9 . . . G 6 165.337 158.23 163.265 1 73.27 ? C42 A1AC9 2304 E 1 HETATM 35 C C43 A1AC9 . . . G 6 159.9 164.318 167.728 1 73.27 ? C43 A1AC9 2304 E 1 HETATM 36 C C44 A1AC9 . . . G 6 163.975 165.607 163.408 1 73.27 ? C44 A1AC9 2304 E 1 HETATM 37 C C45 A1AC9 . . . G 6 161.708 167.454 167.986 1 73.27 ? C45 A1AC9 2304 E 1 HETATM 38 C C46 A1AC9 . . . G 6 167.037 156.982 162.25 1 73.27 ? C46 A1AC9 2304 E 1 HETATM 39 N N07 A1AC9 . . . G 6 166.408 162.383 166.305 1 73.27 ? N07 A1AC9 2304 E 1 HETATM 40 N N08 A1AC9 . . . G 6 157.372 163.706 162.186 1 73.27 ? N08 A1AC9 2304 E 1 HETATM 41 O O01 A1AC9 . . . G 6 162.293 162.946 165.451 1 73.27 ? O01 A1AC9 2304 E 1 HETATM 42 O O02 A1AC9 . . . G 6 160.8 164.885 166.822 1 73.27 ? O02 A1AC9 2304 E 1 HETATM 43 O O03 A1AC9 . . . G 6 161.969 166.311 168.747 1 73.27 ? O03 A1AC9 2304 E 1 HETATM 44 O O04 A1AC9 . . . G 6 162.989 165.479 164.391 1 73.27 ? O04 A1AC9 2304 E 1 HETATM 45 O O05 A1AC9 . . . G 6 163.145 158.372 162.326 1 73.27 ? O05 A1AC9 2304 E 1 HETATM 46 O O06 A1AC9 . . . G 6 165.675 157.3 162.278 1 73.27 ? O06 A1AC9 2304 E 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 46 #