data_8HMB
#
_model_server_result.job_id            ON2SADILj6yAtvKxtvFxSQ 
_model_server_result.datetime_utc      '2024-11-14 18:12:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hmb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":1102}' 
#
_entry.id    8HMB 
#
_exptl.entry_id    8HMB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HMB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HMB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 R N N 
? 8 S N N 
? 8 T N N 
? 8 U N N 
? 8 V N N 
? 8 W N N 
? 8 X N N 
? 8 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 298 D CYS 298 1_555 B SG CYS 326 D CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 316 D CYS 316 1_555 B SG CYS 332 D CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 B SG CYS 1058 D CYS 1078 1_555 B SG CYS 1069 D CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 1431 D CYS 1479 1_555 B SG CYS 1447 D CYS 1495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 C SG CYS 303 E CYS 303 1_555 C SG CYS 1044 E CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 C SG CYS 354 E CYS 354 1_555 C SG CYS 1059 E CYS 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 C SG CYS 904 E CYS 904 1_555 C SG CYS 974 E CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 C ND2 ASN 92 E ASN 92 1_555 R C1 NAG . E NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 C ND2 ASN 184 E ASN 184 1_555 S C1 NAG . E NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 C ND2 ASN 324 E ASN 324 1_555 T C1 NAG . E NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale4 C ND2 ASN 348 E ASN 348 1_555 X C1 NAG . E NAG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale5 C ND2 ASN 468 E ASN 468 1_555 V C1 NAG . E NAG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale6 C ND2 ASN 613 E ASN 613 1_555 W C1 NAG . E NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale7 C ND2 ASN 781 E ASN 781 1_555 U C1 NAG . E NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale8 C ND2 ASN 895 E ASN 895 1_555 Y C1 NAG . E NAG 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
metalc ? metalc1 B OE1 GLU 363 D GLU 363 1_555 P CA CA . D CA 2313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc2 B OE2 GLU 363 D GLU 363 1_555 Q CA CA . D CA 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc3 B OE2 GLU 706 D GLU 706 1_555 Q CA CA . D CA 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc4 B OE1 GLU 1115 D GLU 1135 1_555 Q CA CA . D CA 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 439 n n 
C1 O1 NAG sing 440 n n 
C1 O5 NAG sing 441 n n 
C1 H1 NAG sing 442 n n 
C2 C3 NAG sing 443 n n 
C2 N2 NAG sing 444 n n 
C2 H2 NAG sing 445 n n 
C3 C4 NAG sing 446 n n 
C3 O3 NAG sing 447 n n 
C3 H3 NAG sing 448 n n 
C4 C5 NAG sing 449 n n 
C4 O4 NAG sing 450 n n 
C4 H4 NAG sing 451 n n 
C5 C6 NAG sing 452 n n 
C5 O5 NAG sing 453 n n 
C5 H5 NAG sing 454 n n 
C6 O6 NAG sing 455 n n 
C6 H61 NAG sing 456 n n 
C6 H62 NAG sing 457 n n 
C7 C8 NAG sing 458 n n 
C7 N2 NAG sing 459 n n 
C7 O7 NAG doub 460 n n 
C8 H81 NAG sing 461 n n 
C8 H82 NAG sing 462 n n 
C8 H83 NAG sing 463 n n 
N2 HN2 NAG sing 464 n n 
O1 HO1 NAG sing 465 n n 
O3 HO3 NAG sing 466 n n 
O4 HO4 NAG sing 467 n n 
O6 HO6 NAG sing 468 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8HMB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 R16 D 1 2301 1701 R16 R16 . 
E 4 R16 D 1 2302 1704 R16 R16 . 
F 5 3PE D 1 2303 1705 3PE 3PE . 
G 4 R16 D 1 2304 1707 R16 R16 . 
H 4 R16 D 1 2305 1708 R16 R16 . 
I 4 R16 D 1 2306 1710 R16 R16 . 
J 5 3PE D 1 2307 1711 3PE 3PE . 
K 4 R16 D 1 2308 1713 R16 R16 . 
L 4 R16 D 1 2309 1714 R16 R16 . 
M 4 R16 D 1 2310 1715 R16 R16 . 
N 6 A1AC8 D 1 2311 1726 A1AC8 BEN . 
O 5 3PE D 1 2312 1727 3PE 3PE . 
P 7 CA D 1 2313 2 CA CA . 
Q 7 CA D 1 2314 3 CA CA . 
R 8 NAG E 1 1101 1372 NAG NAG . 
S 8 NAG E 1 1102 1373 NAG NAG . 
T 8 NAG E 1 1103 1383 NAG NAG . 
U 8 NAG E 1 1104 1393 NAG NAG . 
V 8 NAG E 1 1105 1394 NAG NAG . 
W 8 NAG E 1 1106 1397 NAG NAG . 
X 8 NAG E 1 1107 1399 NAG NAG . 
Y 8 NAG E 1 1108 1400 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . S 8 221.567 191.179 167.49 1 80.14 ? C1 NAG 1102 E 1 
HETATM 2 C C2 NAG . . . S 8 222.988 191.165 167.99 1 80.14 ? C2 NAG 1102 E 1 
HETATM 3 C C3 NAG . . . S 8 223.925 191.535 166.856 1 80.14 ? C3 NAG 1102 E 1 
HETATM 4 C C4 NAG . . . S 8 223.631 190.732 165.592 1 80.14 ? C4 NAG 1102 E 1 
HETATM 5 C C5 NAG . . . S 8 222.138 190.471 165.339 1 80.14 ? C5 NAG 1102 E 1 
HETATM 6 C C6 NAG . . . S 8 221.902 189.291 164.427 1 80.14 ? C6 NAG 1102 E 1 
HETATM 7 C C7 NAG . . . S 8 224.075 191.85 170.075 1 80.14 ? C7 NAG 1102 E 1 
HETATM 8 C C8 NAG . . . S 8 224.136 192.875 171.164 1 80.14 ? C8 NAG 1102 E 1 
HETATM 9 N N2 NAG . . . S 8 223.169 192.065 169.117 1 80.14 ? N2 NAG 1102 E 1 
HETATM 10 O O3 NAG . . . S 8 225.265 191.299 167.269 1 80.14 ? O3 NAG 1102 E 1 
HETATM 11 O O4 NAG . . . S 8 224.076 191.528 164.501 1 80.14 ? O4 NAG 1102 E 1 
HETATM 12 O O5 NAG . . . S 8 221.412 190.192 166.545 1 80.14 ? O5 NAG 1102 E 1 
HETATM 13 O O6 NAG . . . S 8 221.072 188.32 165.049 1 80.14 ? O6 NAG 1102 E 1 
HETATM 14 O O7 NAG . . . S 8 224.811 190.871 170.064 1 80.14 ? O7 NAG 1102 E 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#