data_8HMB
#
_model_server_result.job_id            jglzB4RiWKCnQP0DJ5PfiQ 
_model_server_result.datetime_utc      '2024-11-14 18:02:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hmb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":2306}' 
#
_entry.id    8HMB 
#
_exptl.entry_id    8HMB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              226.441 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            HEXADECANE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HMB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HMB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 298 D CYS 298 1_555 B SG CYS 326 D CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 316 D CYS 316 1_555 B SG CYS 332 D CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 B SG CYS 1058 D CYS 1078 1_555 B SG CYS 1069 D CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 1431 D CYS 1479 1_555 B SG CYS 1447 D CYS 1495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 C SG CYS 303 E CYS 303 1_555 C SG CYS 1044 E CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 C SG CYS 354 E CYS 354 1_555 C SG CYS 1059 E CYS 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 C SG CYS 904 E CYS 904 1_555 C SG CYS 974 E CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 C ND2 ASN 92 E ASN 92 1_555 R C1 NAG . E NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 C ND2 ASN 184 E ASN 184 1_555 S C1 NAG . E NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 C ND2 ASN 324 E ASN 324 1_555 T C1 NAG . E NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale4 C ND2 ASN 348 E ASN 348 1_555 X C1 NAG . E NAG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale5 C ND2 ASN 468 E ASN 468 1_555 V C1 NAG . E NAG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale6 C ND2 ASN 613 E ASN 613 1_555 W C1 NAG . E NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale7 C ND2 ASN 781 E ASN 781 1_555 U C1 NAG . E NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale8 C ND2 ASN 895 E ASN 895 1_555 Y C1 NAG . E NAG 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
metalc ? metalc1 B OE1 GLU 363 D GLU 363 1_555 P CA CA . D CA 2313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc2 B OE2 GLU 363 D GLU 363 1_555 Q CA CA . D CA 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc3 B OE2 GLU 706 D GLU 706 1_555 Q CA CA . D CA 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc4 B OE1 GLU 1115 D GLU 1135 1_555 Q CA CA . D CA 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
#
_chem_comp.formula           'C16 H34' 
_chem_comp.formula_weight    226.441 
_chem_comp.id                R16 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEXADECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C27 C28 R16 sing 509 n n 
C27 H271 R16 sing 510 n n 
C27 H272 R16 sing 511 n n 
C27 H273 R16 sing 512 n n 
C28 C29 R16 sing 513 n n 
C28 H281 R16 sing 514 n n 
C28 H282 R16 sing 515 n n 
C29 C30 R16 sing 516 n n 
C29 H291 R16 sing 517 n n 
C29 H292 R16 sing 518 n n 
C30 C31 R16 sing 519 n n 
C30 H301 R16 sing 520 n n 
C30 H302 R16 sing 521 n n 
C31 C32 R16 sing 522 n n 
C31 H311 R16 sing 523 n n 
C31 H312 R16 sing 524 n n 
C32 C33 R16 sing 525 n n 
C32 H321 R16 sing 526 n n 
C32 H322 R16 sing 527 n n 
C33 C34 R16 sing 528 n n 
C33 H331 R16 sing 529 n n 
C33 H332 R16 sing 530 n n 
C34 C35 R16 sing 531 n n 
C34 H341 R16 sing 532 n n 
C34 H342 R16 sing 533 n n 
C35 C36 R16 sing 534 n n 
C35 H351 R16 sing 535 n n 
C35 H352 R16 sing 536 n n 
C36 C37 R16 sing 537 n n 
C36 H361 R16 sing 538 n n 
C36 H362 R16 sing 539 n n 
C37 C38 R16 sing 540 n n 
C37 H371 R16 sing 541 n n 
C37 H372 R16 sing 542 n n 
C38 C39 R16 sing 543 n n 
C38 H381 R16 sing 544 n n 
C38 H382 R16 sing 545 n n 
C39 C40 R16 sing 546 n n 
C39 H391 R16 sing 547 n n 
C39 H392 R16 sing 548 n n 
C40 C41 R16 sing 549 n n 
C40 H401 R16 sing 550 n n 
C40 H402 R16 sing 551 n n 
C41 C42 R16 sing 552 n n 
C41 H411 R16 sing 553 n n 
C41 H412 R16 sing 554 n n 
C42 H421 R16 sing 555 n n 
C42 H422 R16 sing 556 n n 
C42 H423 R16 sing 557 n n 
#
_atom_sites.entry_id                     8HMB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 R16 D 1 2301 1701 R16 R16 . 
E 4 R16 D 1 2302 1704 R16 R16 . 
F 5 3PE D 1 2303 1705 3PE 3PE . 
G 4 R16 D 1 2304 1707 R16 R16 . 
H 4 R16 D 1 2305 1708 R16 R16 . 
I 4 R16 D 1 2306 1710 R16 R16 . 
J 5 3PE D 1 2307 1711 3PE 3PE . 
K 4 R16 D 1 2308 1713 R16 R16 . 
L 4 R16 D 1 2309 1714 R16 R16 . 
M 4 R16 D 1 2310 1715 R16 R16 . 
N 6 A1AC8 D 1 2311 1726 A1AC8 BEN . 
O 5 3PE D 1 2312 1727 3PE 3PE . 
P 7 CA D 1 2313 2 CA CA . 
Q 7 CA D 1 2314 3 CA CA . 
R 8 NAG E 1 1101 1372 NAG NAG . 
S 8 NAG E 1 1102 1373 NAG NAG . 
T 8 NAG E 1 1103 1383 NAG NAG . 
U 8 NAG E 1 1104 1393 NAG NAG . 
V 8 NAG E 1 1105 1394 NAG NAG . 
W 8 NAG E 1 1106 1397 NAG NAG . 
X 8 NAG E 1 1107 1399 NAG NAG . 
Y 8 NAG E 1 1108 1400 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 R16 . . . I 4 157.312 164.035 188.305 1 58.55 ? C27 R16 2306 D 1 
HETATM 2 C C28 R16 . . . I 4 158.207 163.247 189.23 1 58.55 ? C28 R16 2306 D 1 
HETATM 3 C C29 R16 . . . I 4 159.66 163.644 189.189 1 58.55 ? C29 R16 2306 D 1 
HETATM 4 C C30 R16 . . . I 4 160.114 164.353 190.433 1 58.55 ? C30 R16 2306 D 1 
HETATM 5 C C31 R16 . . . I 4 159.364 163.991 191.688 1 58.55 ? C31 R16 2306 D 1 
HETATM 6 C C32 R16 . . . I 4 159.85 164.652 192.952 1 58.55 ? C32 R16 2306 D 1 
HETATM 7 C C33 R16 . . . I 4 160.55 163.71 193.897 1 58.55 ? C33 R16 2306 D 1 
HETATM 8 C C34 R16 . . . I 4 161.355 164.364 194.985 1 58.55 ? C34 R16 2306 D 1 
HETATM 9 C C35 R16 . . . I 4 162.004 163.378 195.921 1 58.55 ? C35 R16 2306 D 1 
HETATM 10 C C36 R16 . . . I 4 163.004 162.443 195.297 1 58.55 ? C36 R16 2306 D 1 
HETATM 11 C C37 R16 . . . I 4 164.241 162.24 196.137 1 58.55 ? C37 R16 2306 D 1 
HETATM 12 C C38 R16 . . . I 4 163.997 162.17 197.625 1 58.55 ? C38 R16 2306 D 1 
HETATM 13 C C39 R16 . . . I 4 165.253 162.24 198.457 1 58.55 ? C39 R16 2306 D 1 
HETATM 14 C C40 R16 . . . I 4 166.266 161.171 198.14 1 58.55 ? C40 R16 2306 D 1 
HETATM 15 C C41 R16 . . . I 4 167.483 161.181 199.026 1 58.55 ? C41 R16 2306 D 1 
HETATM 16 C C42 R16 . . . I 4 168.594 162.078 198.535 1 58.55 ? C42 R16 2306 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           16 
#