data_8HMB
#
_model_server_result.job_id            mwwtiASjTX6RGoqE688eig 
_model_server_result.datetime_utc      '2024-11-14 18:06:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hmb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2307}' 
#
_entry.id    8HMB 
#
_exptl.entry_id    8HMB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              748.065 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-Distearoyl-sn-glycerophosphoethanolamine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HMB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HMB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 J N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 298 D CYS 298 1_555 B SG CYS 326 D CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 316 D CYS 316 1_555 B SG CYS 332 D CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 B SG CYS 1058 D CYS 1078 1_555 B SG CYS 1069 D CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 1431 D CYS 1479 1_555 B SG CYS 1447 D CYS 1495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 C SG CYS 303 E CYS 303 1_555 C SG CYS 1044 E CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 C SG CYS 354 E CYS 354 1_555 C SG CYS 1059 E CYS 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 C SG CYS 904 E CYS 904 1_555 C SG CYS 974 E CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 C ND2 ASN 92 E ASN 92 1_555 R C1 NAG . E NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 C ND2 ASN 184 E ASN 184 1_555 S C1 NAG . E NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 C ND2 ASN 324 E ASN 324 1_555 T C1 NAG . E NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale4 C ND2 ASN 348 E ASN 348 1_555 X C1 NAG . E NAG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale5 C ND2 ASN 468 E ASN 468 1_555 V C1 NAG . E NAG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale6 C ND2 ASN 613 E ASN 613 1_555 W C1 NAG . E NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale7 C ND2 ASN 781 E ASN 781 1_555 U C1 NAG . E NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale8 C ND2 ASN 895 E ASN 895 1_555 Y C1 NAG . E NAG 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
metalc ? metalc1 B OE1 GLU 363 D GLU 363 1_555 P CA CA . D CA 2313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc2 B OE2 GLU 363 D GLU 363 1_555 Q CA CA . D CA 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc3 B OE2 GLU 706 D GLU 706 1_555 Q CA CA . D CA 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc4 B OE1 GLU 1115 D GLU 1135 1_555 Q CA CA . D CA 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
#
_chem_comp.formula           'C41 H82 N O8 P' 
_chem_comp.formula_weight    748.065 
_chem_comp.id                3PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-Distearoyl-sn-glycerophosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O11 3PE sing 1 n n 
P O12 3PE sing 2 n n 
P O13 3PE sing 3 n n 
P O14 3PE doub 4 n n 
N C12 3PE sing 5 n n 
N HN1 3PE sing 6 n n 
N HN2 3PE sing 7 n n 
O11 C1 3PE sing 8 n n 
O13 C11 3PE sing 9 n n 
C11 C12 3PE sing 10 n n 
C11 H111 3PE sing 11 n n 
C11 H112 3PE sing 12 n n 
C12 H121 3PE sing 13 n n 
C12 H122 3PE sing 14 n n 
C1 C2 3PE sing 15 n n 
C1 H11 3PE sing 16 n n 
C1 H12 3PE sing 17 n n 
C2 C3 3PE sing 18 n n 
C2 O21 3PE sing 19 n n 
C2 H2 3PE sing 20 n n 
C3 O31 3PE sing 21 n n 
C3 H31 3PE sing 22 n n 
C3 H32 3PE sing 23 n n 
O31 C31 3PE sing 24 n n 
O32 C31 3PE doub 25 n n 
C31 C32 3PE sing 26 n n 
C32 C33 3PE sing 27 n n 
C32 H321 3PE sing 28 n n 
C32 H322 3PE sing 29 n n 
C33 C34 3PE sing 30 n n 
C33 H331 3PE sing 31 n n 
C33 H332 3PE sing 32 n n 
C34 C35 3PE sing 33 n n 
C34 H341 3PE sing 34 n n 
C34 H342 3PE sing 35 n n 
C35 C36 3PE sing 36 n n 
C35 H351 3PE sing 37 n n 
C35 H352 3PE sing 38 n n 
C36 C37 3PE sing 39 n n 
C36 H361 3PE sing 40 n n 
C36 H362 3PE sing 41 n n 
C37 C38 3PE sing 42 n n 
C37 H371 3PE sing 43 n n 
C37 H372 3PE sing 44 n n 
C38 C39 3PE sing 45 n n 
C38 H381 3PE sing 46 n n 
C38 H382 3PE sing 47 n n 
C39 C3A 3PE sing 48 n n 
C39 H391 3PE sing 49 n n 
C39 H392 3PE sing 50 n n 
C3A C3B 3PE sing 51 n n 
C3A H3A1 3PE sing 52 n n 
C3A H3A2 3PE sing 53 n n 
C3B C3C 3PE sing 54 n n 
C3B H3B1 3PE sing 55 n n 
C3B H3B2 3PE sing 56 n n 
C3C C3D 3PE sing 57 n n 
C3C H3C1 3PE sing 58 n n 
C3C H3C2 3PE sing 59 n n 
C3D C3E 3PE sing 60 n n 
C3D H3D1 3PE sing 61 n n 
C3D H3D2 3PE sing 62 n n 
C3E C3F 3PE sing 63 n n 
C3E H3E1 3PE sing 64 n n 
C3E H3E2 3PE sing 65 n n 
C3F C3G 3PE sing 66 n n 
C3F H3F1 3PE sing 67 n n 
C3F H3F2 3PE sing 68 n n 
C3G C3H 3PE sing 69 n n 
C3G H3G1 3PE sing 70 n n 
C3G H3G2 3PE sing 71 n n 
C3H C3I 3PE sing 72 n n 
C3H H3H1 3PE sing 73 n n 
C3H H3H2 3PE sing 74 n n 
C3I H3I1 3PE sing 75 n n 
C3I H3I2 3PE sing 76 n n 
C3I H3I3 3PE sing 77 n n 
O21 C21 3PE sing 78 n n 
O22 C21 3PE doub 79 n n 
C21 C22 3PE sing 80 n n 
C22 C23 3PE sing 81 n n 
C22 H221 3PE sing 82 n n 
C22 H222 3PE sing 83 n n 
C23 C24 3PE sing 84 n n 
C23 H231 3PE sing 85 n n 
C23 H232 3PE sing 86 n n 
C24 C25 3PE sing 87 n n 
C24 H241 3PE sing 88 n n 
C24 H242 3PE sing 89 n n 
C25 C26 3PE sing 90 n n 
C25 H251 3PE sing 91 n n 
C25 H252 3PE sing 92 n n 
C26 C27 3PE sing 93 n n 
C26 H261 3PE sing 94 n n 
C26 H262 3PE sing 95 n n 
C27 C28 3PE sing 96 n n 
C27 H271 3PE sing 97 n n 
C27 H272 3PE sing 98 n n 
C28 C29 3PE sing 99 n n 
C28 H281 3PE sing 100 n n 
C28 H282 3PE sing 101 n n 
C29 C2A 3PE sing 102 n n 
C29 H291 3PE sing 103 n n 
C29 H292 3PE sing 104 n n 
C2A C2B 3PE sing 105 n n 
C2A H2A1 3PE sing 106 n n 
C2A H2A2 3PE sing 107 n n 
C2B C2C 3PE sing 108 n n 
C2B H2B1 3PE sing 109 n n 
C2B H2B2 3PE sing 110 n n 
C2C C2D 3PE sing 111 n n 
C2C H2C1 3PE sing 112 n n 
C2C H2C2 3PE sing 113 n n 
C2D C2E 3PE sing 114 n n 
C2D H2D1 3PE sing 115 n n 
C2D H2D2 3PE sing 116 n n 
C2E C2F 3PE sing 117 n n 
C2E H2E1 3PE sing 118 n n 
C2E H2E2 3PE sing 119 n n 
C2F C2G 3PE sing 120 n n 
C2F H2F1 3PE sing 121 n n 
C2F H2F2 3PE sing 122 n n 
C2G C2H 3PE sing 123 n n 
C2G H2G1 3PE sing 124 n n 
C2G H2G2 3PE sing 125 n n 
C2H C2I 3PE sing 126 n n 
C2H H2H1 3PE sing 127 n n 
C2H H2H2 3PE sing 128 n n 
C2I H2I1 3PE sing 129 n n 
C2I H2I2 3PE sing 130 n n 
C2I H2I3 3PE sing 131 n n 
O12 H1 3PE sing 132 n n 
#
_atom_sites.entry_id                     8HMB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 R16 D 1 2301 1701 R16 R16 . 
E 4 R16 D 1 2302 1704 R16 R16 . 
F 5 3PE D 1 2303 1705 3PE 3PE . 
G 4 R16 D 1 2304 1707 R16 R16 . 
H 4 R16 D 1 2305 1708 R16 R16 . 
I 4 R16 D 1 2306 1710 R16 R16 . 
J 5 3PE D 1 2307 1711 3PE 3PE . 
K 4 R16 D 1 2308 1713 R16 R16 . 
L 4 R16 D 1 2309 1714 R16 R16 . 
M 4 R16 D 1 2310 1715 R16 R16 . 
N 6 A1AC8 D 1 2311 1726 A1AC8 BEN . 
O 5 3PE D 1 2312 1727 3PE 3PE . 
P 7 CA D 1 2313 2 CA CA . 
Q 7 CA D 1 2314 3 CA CA . 
R 8 NAG E 1 1101 1372 NAG NAG . 
S 8 NAG E 1 1102 1373 NAG NAG . 
T 8 NAG E 1 1103 1383 NAG NAG . 
U 8 NAG E 1 1104 1393 NAG NAG . 
V 8 NAG E 1 1105 1394 NAG NAG . 
W 8 NAG E 1 1106 1397 NAG NAG . 
X 8 NAG E 1 1107 1399 NAG NAG . 
Y 8 NAG E 1 1108 1400 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C31 3PE . . . J 5 158.035 179.14 197.524 1 55.68 ? C31 3PE 2307 D 1 
HETATM 2 C C32 3PE . . . J 5 157.74 179.257 195.992 1 55.68 ? C32 3PE 2307 D 1 
HETATM 3 C C33 3PE . . . J 5 156.223 179.252 195.722 1 55.68 ? C33 3PE 2307 D 1 
HETATM 4 C C34 3PE . . . J 5 155.847 179.795 194.324 1 55.68 ? C34 3PE 2307 D 1 
HETATM 5 C C35 3PE . . . J 5 156.376 178.934 193.169 1 55.68 ? C35 3PE 2307 D 1 
HETATM 6 C C36 3PE . . . J 5 155.946 179.493 191.797 1 55.68 ? C36 3PE 2307 D 1 
HETATM 7 C C37 3PE . . . J 5 154.562 178.985 191.375 1 55.68 ? C37 3PE 2307 D 1 
HETATM 8 C C38 3PE . . . J 5 153.915 179.899 190.331 1 55.68 ? C38 3PE 2307 D 1 
HETATM 9 C C39 3PE . . . J 5 153.918 179.248 188.942 1 55.68 ? C39 3PE 2307 D 1 
HETATM 10 C C3A 3PE . . . J 5 152.88 179.92 188.042 1 55.68 ? C3A 3PE 2307 D 1 
HETATM 11 C C3B 3PE . . . J 5 153.033 179.48 186.588 1 55.68 ? C3B 3PE 2307 D 1 
HETATM 12 C C21 3PE . . . J 5 160.145 175.198 195.916 1 55.68 ? C21 3PE 2307 D 1 
HETATM 13 C C22 3PE . . . J 5 160.27 175.148 194.392 1 55.68 ? C22 3PE 2307 D 1 
HETATM 14 C C23 3PE . . . J 5 158.909 174.863 193.732 1 55.68 ? C23 3PE 2307 D 1 
HETATM 15 C C24 3PE . . . J 5 159.071 174.731 192.212 1 55.68 ? C24 3PE 2307 D 1 
HETATM 16 C C25 3PE . . . J 5 157.719 174.72 191.476 1 55.68 ? C25 3PE 2307 D 1 
HETATM 17 C C26 3PE . . . J 5 157.947 174.681 189.962 1 55.68 ? C26 3PE 2307 D 1 
HETATM 18 C C27 3PE . . . J 5 156.663 174.925 189.18 1 55.68 ? C27 3PE 2307 D 1 
HETATM 19 C C28 3PE . . . J 5 156.99 175.036 187.695 1 55.68 ? C28 3PE 2307 D 1 
HETATM 20 C C29 3PE . . . J 5 155.728 175.12 186.838 1 55.68 ? C29 3PE 2307 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#