data_8HND # _model_server_result.job_id fSy8S6E_qbVzIwiUfSyN7Q _model_server_result.datetime_utc '2024-11-22 19:32:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hnd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 8HND # _exptl.entry_id 8HND _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 350.429 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'estrone 3-sulfate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1179 NAG 2 n B NAG 2 B 2 NAG A 1180 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 142 A CYS 142 1_555 A SG CYS 463 A CYS 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 430 A CYS 430 1_555 A SG CYS 530 A CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 459 A CYS 459 1_555 A SG CYS 506 A CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 465 A CYS 465 1_555 A SG CYS 485 A CYS 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 474 A CYS 474 1_555 A SG CYS 524 A CYS 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 A SG CYS 489 A CYS 489 1_555 A SG CYS 504 A CYS 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 599 A CYS 599 1_555 A SG CYS 613 A CYS 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 503 A ASN 503 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 516 A ASN 516 1_555 D C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C18 H22 O5 S' _chem_comp.formula_weight 350.429 _chem_comp.id FY5 _chem_comp.mon_nstd_flag . _chem_comp.name 'estrone 3-sulfate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 S21 FY5 doub 83 n n O23 S21 FY5 doub 84 n n O22 S21 FY5 sing 85 n n S21 O20 FY5 sing 86 n n C17 C16 FY5 doub 87 n y C17 C18 FY5 sing 88 n y O20 C18 FY5 sing 89 n n C16 C15 FY5 sing 90 n y C18 C19 FY5 doub 91 n y C04 C03 FY5 sing 92 n n C04 C05 FY5 sing 93 n n C03 C02 FY5 sing 94 n n C15 C05 FY5 sing 95 n n C15 C14 FY5 doub 96 n y C19 C14 FY5 sing 97 n y C05 C06 FY5 sing 98 n n C14 C13 FY5 sing 99 n n O11 C10 FY5 doub 100 n n C01 C02 FY5 sing 101 n n C02 C10 FY5 sing 102 n n C02 C07 FY5 sing 103 n n C06 C07 FY5 sing 104 n n C06 C12 FY5 sing 105 n n C10 C09 FY5 sing 106 n n C07 C08 FY5 sing 107 n n C13 C12 FY5 sing 108 n n C09 C08 FY5 sing 109 n n C13 H1 FY5 sing 110 n n C13 H2 FY5 sing 111 n n C17 H3 FY5 sing 112 n n C01 H4 FY5 sing 113 n n C01 H5 FY5 sing 114 n n C01 H6 FY5 sing 115 n n C03 H7 FY5 sing 116 n n C03 H8 FY5 sing 117 n n C04 H9 FY5 sing 118 n n C04 H10 FY5 sing 119 n n C05 H11 FY5 sing 120 n n C06 H12 FY5 sing 121 n n C07 H13 FY5 sing 122 n n C08 H14 FY5 sing 123 n n C08 H15 FY5 sing 124 n n C09 H16 FY5 sing 125 n n C09 H17 FY5 sing 126 n n C12 H18 FY5 sing 127 n n C12 H19 FY5 sing 128 n n C16 H20 FY5 sing 129 n n C19 H21 FY5 sing 130 n n O22 H22 FY5 sing 131 n n # _atom_sites.entry_id 8HND _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FY5 A 1 801 701 FY5 FY5 . D 4 NAG A 1 802 1181 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 FY5 . . . C 3 108.171 104.586 107.937 1 68.44 ? C10 FY5 801 A 1 HETATM 2 C C13 FY5 . . . C 3 104.052 108.397 105.567 1 68.44 ? C13 FY5 801 A 1 HETATM 3 C C15 FY5 . . . C 3 105.954 107.93 103.944 1 68.44 ? C15 FY5 801 A 1 HETATM 4 C C17 FY5 . . . C 3 105.994 109.044 101.796 1 68.44 ? C17 FY5 801 A 1 HETATM 5 C C01 FY5 . . . C 3 108.5 106.846 107.167 1 68.44 ? C01 FY5 801 A 1 HETATM 6 C C02 FY5 . . . C 3 107.811 105.522 106.796 1 68.44 ? C02 FY5 801 A 1 HETATM 7 C C03 FY5 . . . C 3 108.18 105.065 105.378 1 68.44 ? C03 FY5 801 A 1 HETATM 8 C C04 FY5 . . . C 3 107.457 105.899 104.324 1 68.44 ? C04 FY5 801 A 1 HETATM 9 C C05 FY5 . . . C 3 106.616 107.014 104.956 1 68.44 ? C05 FY5 801 A 1 HETATM 10 C C06 FY5 . . . C 3 105.581 106.452 105.947 1 68.44 ? C06 FY5 801 A 1 HETATM 11 C C07 FY5 . . . C 3 106.283 105.536 106.948 1 68.44 ? C07 FY5 801 A 1 HETATM 12 C C08 FY5 . . . C 3 106.064 105.681 108.461 1 68.44 ? C08 FY5 801 A 1 HETATM 13 C C09 FY5 . . . C 3 107.077 104.662 108.988 1 68.44 ? C09 FY5 801 A 1 HETATM 14 C C12 FY5 . . . C 3 104.836 107.609 106.605 1 68.44 ? C12 FY5 801 A 1 HETATM 15 C C14 FY5 . . . C 3 104.726 108.538 104.223 1 68.44 ? C14 FY5 801 A 1 HETATM 16 C C16 FY5 . . . C 3 106.571 108.197 102.725 1 68.44 ? C16 FY5 801 A 1 HETATM 17 C C18 FY5 . . . C 3 104.775 109.632 102.076 1 68.44 ? C18 FY5 801 A 1 HETATM 18 C C19 FY5 . . . C 3 104.139 109.372 103.278 1 68.44 ? C19 FY5 801 A 1 HETATM 19 O O11 FY5 . . . C 3 109.154 103.887 107.999 1 68.44 ? O11 FY5 801 A 1 HETATM 20 O O20 FY5 . . . C 3 104.173 110.553 101.179 1 68.44 ? O20 FY5 801 A 1 HETATM 21 O O22 FY5 . . . C 3 105.362 112.545 101.674 1 68.44 ? O22 FY5 801 A 1 HETATM 22 O O23 FY5 . . . C 3 106.295 111.144 100.034 1 68.44 ? O23 FY5 801 A 1 HETATM 23 O O24 FY5 . . . C 3 104.203 112.408 99.618 1 68.44 ? O24 FY5 801 A 1 HETATM 24 S S21 FY5 . . . C 3 105.071 111.678 100.451 1 68.44 ? S21 FY5 801 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #