data_8HNL # _model_server_result.job_id gTPxF88wjgBmufTosxLs3g _model_server_result.datetime_utc '2024-10-11 00:29:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hnl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":603}' # _entry.id 8HNL # _exptl.entry_id 8HNL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 588.74 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-N-[(2S)-5-carbamimidamido-1-(cyclohexylmethylamino)-1-oxidanylidene-pentan-2-yl]-2-(4-oxidanylidene-4-phenyl-butanoyl)-3,4-dihydro-1H-isoquinoline-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HNL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 181 R CYS 43 1_555 D SG CYS 428 R CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 D SG CYS 262 R CYS 124 1_555 D SG CYS 341 R CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 E SG CYS 22 S CYS 22 1_555 E SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 E SG CYS 159 S CYS 159 1_555 E SG CYS 229 S CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C33 H44 N6 O4' _chem_comp.formula_weight 588.74 _chem_comp.id 4AI _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-N-[(2S)-5-carbamimidamido-1-(cyclohexylmethylamino)-1-oxidanylidene-pentan-2-yl]-2-(4-oxidanylidene-4-phenyl-butanoyl)-3,4-dihydro-1H-isoquinoline-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PS372424 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C13 4AI doub 1 n n C12 C11 4AI sing 2 n n C12 N2 4AI sing 3 n n C11 C10 4AI sing 4 n n C19 C18 4AI doub 5 n y C19 C20 4AI sing 6 n y C13 N2 4AI sing 7 n n C13 N3 4AI sing 8 n n C18 C17 4AI sing 9 n y C20 C21 4AI doub 10 n y C10 C9 4AI sing 11 n n O2 C14 4AI doub 12 n n C17 C16 4AI sing 13 n n C17 C22 4AI doub 14 n y C9 C8 4AI sing 15 n n C9 N5 4AI sing 16 n n O1 C8 4AI doub 17 n n C16 C15 4AI sing 18 n n C14 N5 4AI sing 19 n n C14 C15 4AI sing 20 n n C21 C22 4AI sing 21 n y C8 N1 4AI sing 22 n n C22 C23 4AI sing 23 n n C15 N6 4AI sing 24 n n N1 C7 4AI sing 25 n n C23 N6 4AI sing 26 n n N6 C24 4AI sing 27 n n C7 C4 4AI sing 28 n n C24 O3 4AI doub 29 n n C24 C25 4AI sing 30 n n C4 C5 4AI sing 31 n n C4 C3 4AI sing 32 n n C5 C6 4AI sing 33 n n C32 C33 4AI doub 34 n y C32 C31 4AI sing 35 n y C33 C28 4AI sing 36 n y C26 C25 4AI sing 37 n n C26 C27 4AI sing 38 n n C6 C1 4AI sing 39 n n C1 C2 4AI sing 40 n n C31 C30 4AI doub 41 n y C3 C2 4AI sing 42 n n C28 C27 4AI sing 43 n n C28 C29 4AI doub 44 n y C27 O4 4AI doub 45 n n C30 C29 4AI sing 46 n y C1 H1 4AI sing 47 n n C1 H2 4AI sing 48 n n C10 H3 4AI sing 49 n n C10 H4 4AI sing 50 n n C11 H5 4AI sing 51 n n C11 H6 4AI sing 52 n n C12 H7 4AI sing 53 n n C12 H8 4AI sing 54 n n C15 H9 4AI sing 55 n n C16 H10 4AI sing 56 n n C16 H11 4AI sing 57 n n C18 H12 4AI sing 58 n n C19 H13 4AI sing 59 n n C2 H14 4AI sing 60 n n C2 H15 4AI sing 61 n n C20 H16 4AI sing 62 n n C21 H17 4AI sing 63 n n C23 H18 4AI sing 64 n n C23 H19 4AI sing 65 n n C25 H20 4AI sing 66 n n C25 H21 4AI sing 67 n n C26 H22 4AI sing 68 n n C26 H23 4AI sing 69 n n C29 H24 4AI sing 70 n n C3 H25 4AI sing 71 n n C3 H26 4AI sing 72 n n C30 H27 4AI sing 73 n n C31 H28 4AI sing 74 n n C32 H29 4AI sing 75 n n C33 H30 4AI sing 76 n n C4 H31 4AI sing 77 n n C5 H32 4AI sing 78 n n C5 H33 4AI sing 79 n n C6 H34 4AI sing 80 n n C6 H35 4AI sing 81 n n C7 H36 4AI sing 82 n n C7 H37 4AI sing 83 n n C9 H38 4AI sing 84 n n N1 H39 4AI sing 85 n n N2 H40 4AI sing 86 n n N3 H41 4AI sing 87 n n N3 H42 4AI sing 88 n n N4 H43 4AI sing 89 n n N5 H44 4AI sing 90 n n # _atom_sites.entry_id 8HNL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CLR R 1 601 1 CLR CLR . G 6 CLR R 1 602 2 CLR CLR . H 7 4AI R 1 603 1 4AI PS3 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4AI . . . H 7 115.256 132.881 88.357 1 92.69 ? C4 4AI 603 R 1 HETATM 2 C C3 4AI . . . H 7 115.768 133.346 89.705 1 91.27 ? C3 4AI 603 R 1 HETATM 3 C C2 4AI . . . H 7 116.975 132.531 90.16 1 91.77 ? C2 4AI 603 R 1 HETATM 4 C C1 4AI . . . H 7 116.952 131.143 89.556 1 92.52 ? C1 4AI 603 R 1 HETATM 5 C C6 4AI . . . H 7 115.533 130.629 89.445 1 92.06 ? C6 4AI 603 R 1 HETATM 6 C C5 4AI . . . H 7 114.718 131.468 88.466 1 91.96 ? C5 4AI 603 R 1 HETATM 7 C C7 4AI . . . H 7 114.207 133.83 87.799 1 94.57 ? C7 4AI 603 R 1 HETATM 8 N N1 4AI . . . H 7 113.344 133.177 86.825 1 92.05 ? N1 4AI 603 R 1 HETATM 9 N N5 4AI . . . H 7 111.132 132.334 85.641 1 90.07 ? N5 4AI 603 R 1 HETATM 10 C C9 4AI . . . H 7 112.018 133.098 84.783 1 91.07 ? C9 4AI 603 R 1 HETATM 11 C C8 4AI . . . H 7 113.192 133.65 85.587 1 90.9 ? C8 4AI 603 R 1 HETATM 12 O O1 4AI . . . H 7 113.937 134.495 85.1 1 91.6 ? O1 4AI 603 R 1 HETATM 13 C C10 4AI . . . H 7 111.265 134.228 84.087 1 94.07 ? C10 4AI 603 R 1 HETATM 14 C C11 4AI . . . H 7 110.483 133.795 82.851 1 92.11 ? C11 4AI 603 R 1 HETATM 15 C C12 4AI . . . H 7 109.568 134.903 82.382 1 95.01 ? C12 4AI 603 R 1 HETATM 16 N N2 4AI . . . H 7 109.263 135.82 83.491 1 96.61 ? N2 4AI 603 R 1 HETATM 17 C C13 4AI . . . H 7 108.619 136.955 83.28 1 96.48 ? C13 4AI 603 R 1 HETATM 18 N N3 4AI . . . H 7 107.669 137.371 84.119 1 94.91 ? N3 4AI 603 R 1 HETATM 19 N N4 4AI . . . H 7 108.897 137.728 82.23 1 96.23 ? N4 4AI 603 R 1 HETATM 20 C C14 4AI . . . H 7 110.475 131.255 85.194 1 95.08 ? C14 4AI 603 R 1 HETATM 21 N N6 4AI . . . H 7 109.007 131.627 87.165 1 93.79 ? N6 4AI 603 R 1 HETATM 22 O O2 4AI . . . H 7 110.774 130.726 84.121 1 98.48 ? O2 4AI 603 R 1 HETATM 23 C C16 4AI . . . H 7 108.12 130.452 85.187 1 95.12 ? C16 4AI 603 R 1 HETATM 24 C C17 4AI . . . H 7 107.545 131.749 84.706 1 93.06 ? C17 4AI 603 R 1 HETATM 25 C C18 4AI . . . H 7 107.128 131.935 83.388 1 95.46 ? C18 4AI 603 R 1 HETATM 26 C C19 4AI . . . H 7 106.608 133.144 82.985 1 93.54 ? C19 4AI 603 R 1 HETATM 27 C C20 4AI . . . H 7 106.506 134.181 83.889 1 95.57 ? C20 4AI 603 R 1 HETATM 28 C C21 4AI . . . H 7 106.926 134.01 85.195 1 95.42 ? C21 4AI 603 R 1 HETATM 29 C C22 4AI . . . H 7 107.454 132.796 85.61 1 91.52 ? C22 4AI 603 R 1 HETATM 30 C C23 4AI . . . H 7 107.902 132.593 87.028 1 90.79 ? C23 4AI 603 R 1 HETATM 31 C C15 4AI . . . H 7 109.34 130.71 86.066 1 96.28 ? C15 4AI 603 R 1 HETATM 32 C C24 4AI . . . H 7 109.751 131.534 88.289 1 93.96 ? C24 4AI 603 R 1 HETATM 33 C C25 4AI . . . H 7 109.648 132.632 89.307 1 91.92 ? C25 4AI 603 R 1 HETATM 34 C C26 4AI . . . H 7 110.681 133.712 89.069 1 92.45 ? C26 4AI 603 R 1 HETATM 35 C C27 4AI . . . H 7 110.849 134.596 90.271 1 92.97 ? C27 4AI 603 R 1 HETATM 36 C C28 4AI . . . H 7 111.345 135.987 90.074 1 90.16 ? C28 4AI 603 R 1 HETATM 37 C C29 4AI . . . H 7 112.247 136.548 90.966 1 90.83 ? C29 4AI 603 R 1 HETATM 38 C C30 4AI . . . H 7 112.707 137.838 90.775 1 92.65 ? C30 4AI 603 R 1 HETATM 39 C C31 4AI . . . H 7 112.27 138.574 89.7 1 94.24 ? C31 4AI 603 R 1 HETATM 40 C C32 4AI . . . H 7 111.375 138.03 88.811 1 91.62 ? C32 4AI 603 R 1 HETATM 41 C C33 4AI . . . H 7 110.911 136.741 88.994 1 91.47 ? C33 4AI 603 R 1 HETATM 42 O O3 4AI . . . H 7 110.507 130.589 88.47 1 95.24 ? O3 4AI 603 R 1 HETATM 43 O O4 4AI . . . H 7 110.582 134.186 91.383 1 97.2 ? O4 4AI 603 R 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #