data_8HNY # _model_server_result.job_id -fj5gO1lz7V5NHrPdFCCrw _model_server_result.datetime_utc '2024-11-15 11:45:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8HNY # _exptl.entry_id 8HNY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.316 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{S},8~{a}~{S})-3-[(4-fluoranyl-1~{H}-indol-3-yl)methyl]-2,3,6,7,8,8~{a}-hexahydropyrrolo[1,2-a]pyrazine-1,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HNY _cell.length_a 42.121 _cell.length_b 90.731 _cell.length_c 95.088 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 348 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 348 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.394 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H16 F N3 O2' _chem_comp.formula_weight 301.316 _chem_comp.id 2IV _chem_comp.mon_nstd_flag . _chem_comp.name (3~{S},8~{a}~{S})-3-[(4-fluoranyl-1~{H}-indol-3-yl)methyl]-2,3,6,7,8,8~{a}-hexahydropyrrolo[1,2-a]pyrazine-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 2IV sing 1 n n C10 C02 2IV sing 2 n n C10 N09 2IV sing 3 n n C11 C12 2IV sing 4 n n C12 C13 2IV doub 5 n y C12 C21 2IV sing 6 n y C13 N14 2IV sing 7 n y C02 N03 2IV sing 8 n n C02 O01 2IV doub 9 n n C04 C05 2IV sing 10 n n C04 C08 2IV sing 11 n n C04 N03 2IV sing 12 n n C05 C06 2IV sing 13 n n C06 C07 2IV sing 14 n n C08 N09 2IV sing 15 n n C08 O22 2IV doub 16 n n C15 C16 2IV doub 17 n y C15 C21 2IV sing 18 n y C15 N14 2IV sing 19 n y C16 C17 2IV sing 20 n y C17 C18 2IV doub 21 n y C18 C19 2IV sing 22 n y C19 C21 2IV doub 23 n y C19 F20 2IV sing 24 n n C10 H1 2IV sing 25 n n C11 H2 2IV sing 26 n n C11 H3 2IV sing 27 n n C13 H4 2IV sing 28 n n C04 H5 2IV sing 29 n n C05 H6 2IV sing 30 n n C05 H7 2IV sing 31 n n C06 H8 2IV sing 32 n n C06 H9 2IV sing 33 n n C07 H10 2IV sing 34 n n C07 H11 2IV sing 35 n n C16 H13 2IV sing 36 n n C17 H14 2IV sing 37 n n C18 H15 2IV sing 38 n n N09 H17 2IV sing 39 n n N14 H18 2IV sing 40 n n C07 N03 2IV sing 41 n n # _atom_sites.entry_id 8HNY _atom_sites.fract_transf_matrix[1][1] 0.023741 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 401 404 HEM HEM . C 3 2IV A 1 402 406 2IV 4FC . D 4 HOH A 1 501 141 HOH HOH . D 4 HOH A 2 502 94 HOH HOH . D 4 HOH A 3 503 60 HOH HOH . D 4 HOH A 4 504 142 HOH HOH . D 4 HOH A 5 505 9 HOH HOH . D 4 HOH A 6 506 39 HOH HOH . D 4 HOH A 7 507 70 HOH HOH . D 4 HOH A 8 508 86 HOH HOH . D 4 HOH A 9 509 107 HOH HOH . D 4 HOH A 10 510 97 HOH HOH . D 4 HOH A 11 511 134 HOH HOH . D 4 HOH A 12 512 114 HOH HOH . D 4 HOH A 13 513 21 HOH HOH . D 4 HOH A 14 514 87 HOH HOH . D 4 HOH A 15 515 123 HOH HOH . D 4 HOH A 16 516 24 HOH HOH . D 4 HOH A 17 517 76 HOH HOH . D 4 HOH A 18 518 64 HOH HOH . D 4 HOH A 19 519 28 HOH HOH . D 4 HOH A 20 520 63 HOH HOH . D 4 HOH A 21 521 78 HOH HOH . D 4 HOH A 22 522 4 HOH HOH . D 4 HOH A 23 523 81 HOH HOH . D 4 HOH A 24 524 40 HOH HOH . D 4 HOH A 25 525 37 HOH HOH . D 4 HOH A 26 526 105 HOH HOH . D 4 HOH A 27 527 47 HOH HOH . D 4 HOH A 28 528 112 HOH HOH . D 4 HOH A 29 529 137 HOH HOH . D 4 HOH A 30 530 54 HOH HOH . D 4 HOH A 31 531 124 HOH HOH . D 4 HOH A 32 532 93 HOH HOH . D 4 HOH A 33 533 48 HOH HOH . D 4 HOH A 34 534 152 HOH HOH . D 4 HOH A 35 535 32 HOH HOH . D 4 HOH A 36 536 61 HOH HOH . D 4 HOH A 37 537 125 HOH HOH . D 4 HOH A 38 538 20 HOH HOH . D 4 HOH A 39 539 92 HOH HOH . D 4 HOH A 40 540 42 HOH HOH . D 4 HOH A 41 541 147 HOH HOH . D 4 HOH A 42 542 66 HOH HOH . D 4 HOH A 43 543 110 HOH HOH . D 4 HOH A 44 544 38 HOH HOH . D 4 HOH A 45 545 2 HOH HOH . D 4 HOH A 46 546 53 HOH HOH . D 4 HOH A 47 547 15 HOH HOH . D 4 HOH A 48 548 100 HOH HOH . D 4 HOH A 49 549 104 HOH HOH . D 4 HOH A 50 550 73 HOH HOH . D 4 HOH A 51 551 30 HOH HOH . D 4 HOH A 52 552 41 HOH HOH . D 4 HOH A 53 553 17 HOH HOH . D 4 HOH A 54 554 25 HOH HOH . D 4 HOH A 55 555 119 HOH HOH . D 4 HOH A 56 556 31 HOH HOH . D 4 HOH A 57 557 36 HOH HOH . D 4 HOH A 58 558 22 HOH HOH . D 4 HOH A 59 559 82 HOH HOH . D 4 HOH A 60 560 67 HOH HOH . D 4 HOH A 61 561 128 HOH HOH . D 4 HOH A 62 562 23 HOH HOH . D 4 HOH A 63 563 46 HOH HOH . D 4 HOH A 64 564 11 HOH HOH . D 4 HOH A 65 565 18 HOH HOH . D 4 HOH A 66 566 115 HOH HOH . D 4 HOH A 67 567 35 HOH HOH . D 4 HOH A 68 568 50 HOH HOH . D 4 HOH A 69 569 13 HOH HOH . D 4 HOH A 70 570 6 HOH HOH . D 4 HOH A 71 571 14 HOH HOH . D 4 HOH A 72 572 83 HOH HOH . D 4 HOH A 73 573 127 HOH HOH . D 4 HOH A 74 574 52 HOH HOH . D 4 HOH A 75 575 71 HOH HOH . D 4 HOH A 76 576 80 HOH HOH . D 4 HOH A 77 577 102 HOH HOH . D 4 HOH A 78 578 90 HOH HOH . D 4 HOH A 79 579 12 HOH HOH . D 4 HOH A 80 580 111 HOH HOH . D 4 HOH A 81 581 145 HOH HOH . D 4 HOH A 82 582 79 HOH HOH . D 4 HOH A 83 583 19 HOH HOH . D 4 HOH A 84 584 34 HOH HOH . D 4 HOH A 85 585 57 HOH HOH . D 4 HOH A 86 586 8 HOH HOH . D 4 HOH A 87 587 59 HOH HOH . D 4 HOH A 88 588 109 HOH HOH . D 4 HOH A 89 589 49 HOH HOH . D 4 HOH A 90 590 27 HOH HOH . D 4 HOH A 91 591 62 HOH HOH . D 4 HOH A 92 592 135 HOH HOH . D 4 HOH A 93 593 98 HOH HOH . D 4 HOH A 94 594 33 HOH HOH . D 4 HOH A 95 595 5 HOH HOH . D 4 HOH A 96 596 117 HOH HOH . D 4 HOH A 97 597 56 HOH HOH . D 4 HOH A 98 598 140 HOH HOH . D 4 HOH A 99 599 126 HOH HOH . D 4 HOH A 100 600 153 HOH HOH . D 4 HOH A 101 601 96 HOH HOH . D 4 HOH A 102 602 55 HOH HOH . D 4 HOH A 103 603 99 HOH HOH . D 4 HOH A 104 604 16 HOH HOH . D 4 HOH A 105 605 51 HOH HOH . D 4 HOH A 106 606 75 HOH HOH . D 4 HOH A 107 607 91 HOH HOH . D 4 HOH A 108 608 106 HOH HOH . D 4 HOH A 109 609 45 HOH HOH . D 4 HOH A 110 610 84 HOH HOH . D 4 HOH A 111 611 131 HOH HOH . D 4 HOH A 112 612 3 HOH HOH . D 4 HOH A 113 613 74 HOH HOH . D 4 HOH A 114 614 118 HOH HOH . D 4 HOH A 115 615 26 HOH HOH . D 4 HOH A 116 616 132 HOH HOH . D 4 HOH A 117 617 72 HOH HOH . D 4 HOH A 118 618 151 HOH HOH . D 4 HOH A 119 619 44 HOH HOH . D 4 HOH A 120 620 120 HOH HOH . D 4 HOH A 121 621 113 HOH HOH . D 4 HOH A 122 622 144 HOH HOH . D 4 HOH A 123 623 10 HOH HOH . D 4 HOH A 124 624 7 HOH HOH . D 4 HOH A 125 625 116 HOH HOH . D 4 HOH A 126 626 146 HOH HOH . D 4 HOH A 127 627 88 HOH HOH . D 4 HOH A 128 628 58 HOH HOH . D 4 HOH A 129 629 65 HOH HOH . D 4 HOH A 130 630 148 HOH HOH . D 4 HOH A 131 631 136 HOH HOH . D 4 HOH A 132 632 89 HOH HOH . D 4 HOH A 133 633 143 HOH HOH . D 4 HOH A 134 634 1 HOH HOH . D 4 HOH A 135 635 130 HOH HOH . D 4 HOH A 136 636 150 HOH HOH . D 4 HOH A 137 637 138 HOH HOH . D 4 HOH A 138 638 121 HOH HOH . D 4 HOH A 139 639 69 HOH HOH . D 4 HOH A 140 640 139 HOH HOH . D 4 HOH A 141 641 129 HOH HOH . D 4 HOH A 142 642 103 HOH HOH . D 4 HOH A 143 643 101 HOH HOH . D 4 HOH A 144 644 95 HOH HOH . D 4 HOH A 145 645 108 HOH HOH . D 4 HOH A 146 646 43 HOH HOH . D 4 HOH A 147 647 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 2IV . . . C 3 6.804 13.305 20.699 1 22.59 ? C10 2IV 402 A 1 HETATM 2 C C11 2IV . . . C 3 8.161 13.859 20.262 1 19.77 ? C11 2IV 402 A 1 HETATM 3 C C12 2IV . . . C 3 8.932 12.607 19.777 1 18.19 ? C12 2IV 402 A 1 HETATM 4 C C13 2IV . . . C 3 9.147 12.233 18.455 1 19.57 ? C13 2IV 402 A 1 HETATM 5 C C02 2IV . . . C 3 5.816 14.471 20.857 1 23.7 ? C02 2IV 402 A 1 HETATM 6 C C04 2IV . . . C 3 3.987 12.842 20.579 1 19.76 ? C04 2IV 402 A 1 HETATM 7 C C05 2IV . . . C 3 2.614 13.391 19.806 1 18.36 ? C05 2IV 402 A 1 HETATM 8 C C06 2IV . . . C 3 2.341 14.797 20.391 1 19.18 ? C06 2IV 402 A 1 HETATM 9 C C07 2IV . . . C 3 3.529 15.28 20.944 1 21.05 ? C07 2IV 402 A 1 HETATM 10 C C08 2IV . . . C 3 4.8 11.926 19.647 1 23.67 ? C08 2IV 402 A 1 HETATM 11 C C15 2IV . . . C 3 10.021 10.647 19.781 1 23.12 ? C15 2IV 402 A 1 HETATM 12 C C16 2IV . . . C 3 10.652 9.481 20.318 1 19.6 ? C16 2IV 402 A 1 HETATM 13 C C17 2IV . . . C 3 10.727 9.298 21.702 1 19.82 ? C17 2IV 402 A 1 HETATM 14 C C18 2IV . . . C 3 10.171 10.271 22.556 1 21.31 ? C18 2IV 402 A 1 HETATM 15 C C19 2IV . . . C 3 9.524 11.403 22.028 1 20.24 ? C19 2IV 402 A 1 HETATM 16 C C21 2IV . . . C 3 9.459 11.591 20.622 1 19.09 ? C21 2IV 402 A 1 HETATM 17 F F20 2IV . . . C 3 9.002 12.341 22.87 1 19.27 ? F20 2IV 402 A 1 HETATM 18 N N03 2IV . . . C 3 4.549 13.955 20.79 1 21.19 ? N03 2IV 402 A 1 HETATM 19 N N09 2IV . . . C 3 6.362 12.188 19.723 1 21.77 ? N09 2IV 402 A 1 HETATM 20 N N14 2IV . . . C 3 9.807 11.065 18.481 1 26.16 ? N14 2IV 402 A 1 HETATM 21 O O01 2IV . . . C 3 6.148 15.605 21.048 1 20.07 ? O01 2IV 402 A 1 HETATM 22 O O22 2IV . . . C 3 4.294 11.075 18.954 1 19.68 ? O22 2IV 402 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 22 #