data_8HO6 # _model_server_result.job_id CKMDd6UspkI-7pKfyw-vsQ _model_server_result.datetime_utc '2025-07-27 11:41:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ho6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8HO6 # _exptl.entry_id 8HO6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HO6 _cell.length_a 69.17 _cell.length_b 72.35 _cell.length_c 79.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HO6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 197 A GLU 178 1_555 A N TPO 198 A TPO 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C TPO 198 A TPO 179 1_555 A N HIS 199 A HIS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C VAL 200 A VAL 181 1_555 A N SEP 201 A SEP 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C SEP 201 A SEP 182 1_555 A N TPO 202 A TPO 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C TPO 202 A TPO 183 1_555 A N ARG 203 A ARG 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASP 185 A ASP 166 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc2 A OD2 ASP 185 A ASP 166 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc3 B O2G ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc4 B O2B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc5 C MG MG . A MG 402 1_555 D O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8HO6 _atom_sites.fract_transf_matrix[1][1] 0.014457 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 401 ATP ATP . C 3 MG A 1 402 501 MG MG . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 74 HOH HOH . D 4 HOH A 4 504 81 HOH HOH . D 4 HOH A 5 505 69 HOH HOH . D 4 HOH A 6 506 50 HOH HOH . D 4 HOH A 7 507 31 HOH HOH . D 4 HOH A 8 508 4 HOH HOH . D 4 HOH A 9 509 47 HOH HOH . D 4 HOH A 10 510 46 HOH HOH . D 4 HOH A 11 511 71 HOH HOH . D 4 HOH A 12 512 82 HOH HOH . D 4 HOH A 13 513 57 HOH HOH . D 4 HOH A 14 514 37 HOH HOH . D 4 HOH A 15 515 9 HOH HOH . D 4 HOH A 16 516 7 HOH HOH . D 4 HOH A 17 517 25 HOH HOH . D 4 HOH A 18 518 63 HOH HOH . D 4 HOH A 19 519 64 HOH HOH . D 4 HOH A 20 520 51 HOH HOH . D 4 HOH A 21 521 16 HOH HOH . D 4 HOH A 22 522 17 HOH HOH . D 4 HOH A 23 523 11 HOH HOH . D 4 HOH A 24 524 86 HOH HOH . D 4 HOH A 25 525 75 HOH HOH . D 4 HOH A 26 526 38 HOH HOH . D 4 HOH A 27 527 42 HOH HOH . D 4 HOH A 28 528 48 HOH HOH . D 4 HOH A 29 529 12 HOH HOH . D 4 HOH A 30 530 32 HOH HOH . D 4 HOH A 31 531 20 HOH HOH . D 4 HOH A 32 532 40 HOH HOH . D 4 HOH A 33 533 43 HOH HOH . D 4 HOH A 34 534 60 HOH HOH . D 4 HOH A 35 535 52 HOH HOH . D 4 HOH A 36 536 26 HOH HOH . D 4 HOH A 37 537 5 HOH HOH . D 4 HOH A 38 538 22 HOH HOH . D 4 HOH A 39 539 3 HOH HOH . D 4 HOH A 40 540 6 HOH HOH . D 4 HOH A 41 541 14 HOH HOH . D 4 HOH A 42 542 27 HOH HOH . D 4 HOH A 43 543 53 HOH HOH . D 4 HOH A 44 544 29 HOH HOH . D 4 HOH A 45 545 54 HOH HOH . D 4 HOH A 46 546 30 HOH HOH . D 4 HOH A 47 547 96 HOH HOH . D 4 HOH A 48 548 28 HOH HOH . D 4 HOH A 49 549 62 HOH HOH . D 4 HOH A 50 550 88 HOH HOH . D 4 HOH A 51 551 77 HOH HOH . D 4 HOH A 52 552 56 HOH HOH . D 4 HOH A 53 553 45 HOH HOH . D 4 HOH A 54 554 23 HOH HOH . D 4 HOH A 55 555 84 HOH HOH . D 4 HOH A 56 556 13 HOH HOH . D 4 HOH A 57 557 44 HOH HOH . D 4 HOH A 58 558 76 HOH HOH . D 4 HOH A 59 559 67 HOH HOH . D 4 HOH A 60 560 19 HOH HOH . D 4 HOH A 61 561 8 HOH HOH . D 4 HOH A 62 562 36 HOH HOH . D 4 HOH A 63 563 41 HOH HOH . D 4 HOH A 64 564 34 HOH HOH . D 4 HOH A 65 565 15 HOH HOH . D 4 HOH A 66 566 35 HOH HOH . D 4 HOH A 67 567 39 HOH HOH . D 4 HOH A 68 568 89 HOH HOH . D 4 HOH A 69 569 65 HOH HOH . D 4 HOH A 70 570 79 HOH HOH . D 4 HOH A 71 571 85 HOH HOH . D 4 HOH A 72 572 80 HOH HOH . D 4 HOH A 73 573 73 HOH HOH . D 4 HOH A 74 574 24 HOH HOH . D 4 HOH A 75 575 78 HOH HOH . D 4 HOH A 76 576 70 HOH HOH . D 4 HOH A 77 577 72 HOH HOH . D 4 HOH A 78 578 90 HOH HOH . D 4 HOH A 79 579 92 HOH HOH . D 4 HOH A 80 580 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 26.649 28.098 45.202 1 38.21 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . B 2 25.741 28.394 44.029 1 36.05 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . B 2 27.696 27.042 44.928 1 33.92 -1 O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . B 2 25.98 27.777 46.527 1 34.8 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . B 2 29.016 29.65 45.764 1 31.29 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . B 2 29.121 29.312 47.236 1 33.55 -1 O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . B 2 29.882 28.93 44.776 1 34.72 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . B 2 27.43 29.517 45.386 1 35.32 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . B 2 29.288 32.212 44.412 1 38.23 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . B 2 27.983 32.135 43.684 1 37.15 -1 O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . B 2 30.578 32.044 43.618 1 38.66 ? O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . B 2 29.272 31.249 45.708 1 33.22 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . B 2 29.387 33.619 45.171 1 36.78 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . B 2 28.42 33.927 46.188 1 37.56 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . B 2 27.959 35.376 46.044 1 36.8 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . B 2 29.02 36.288 46.371 1 39.38 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . B 2 27.591 35.704 44.602 1 38.6 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . B 2 26.245 35.325 44.261 1 38.37 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . B 2 27.837 37.198 44.564 1 39.82 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . B 2 26.72 37.896 45.121 1 38.31 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . B 2 29.031 37.399 45.483 1 38.27 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . B 2 30.149 37.32 44.524 1 39.09 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . B 2 30.789 36.193 44.136 1 37.88 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . B 2 31.727 36.46 43.202 1 36.3 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . B 2 31.713 37.785 42.999 1 37.17 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . B 2 32.461 38.723 42.148 1 40.7 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . B 2 33.43 38.26 41.328 1 36.95 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . B 2 32.132 40.035 42.212 1 39.99 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . B 2 31.16 40.481 43.026 1 37.81 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . B 2 30.436 39.685 43.824 1 40.65 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . B 2 30.664 38.35 43.857 1 40.21 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #