data_8HOD
#
_model_server_result.job_id            ac4jpdDV_rHbDibL9LxktA 
_model_server_result.datetime_utc      '2025-07-26 19:53:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hod 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    8HOD 
#
_exptl.entry_id    8HOD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HOD 
_cell.length_a            43.82 
_cell.length_b            84.01 
_cell.length_c            98.81 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HOD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8HOD 
_atom_sites.fract_transf_matrix[1][1]    0.022821 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011903 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01012 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 401 ADP ADP . 
C 3 GOL A 1 402 501 GOL GOL . 
D 3 GOL A 1 403 601 GOL GOL . 
E 3 GOL A 1 404 701 GOL GOL . 
F 4 HOH A 1 501 5 HOH HOH . 
F 4 HOH A 2 502 61 HOH HOH . 
F 4 HOH A 3 503 52 HOH HOH . 
F 4 HOH A 4 504 25 HOH HOH . 
F 4 HOH A 5 505 54 HOH HOH . 
F 4 HOH A 6 506 137 HOH HOH . 
F 4 HOH A 7 507 6 HOH HOH . 
F 4 HOH A 8 508 92 HOH HOH . 
F 4 HOH A 9 509 71 HOH HOH . 
F 4 HOH A 10 510 33 HOH HOH . 
F 4 HOH A 11 511 67 HOH HOH . 
F 4 HOH A 12 512 73 HOH HOH . 
F 4 HOH A 13 513 58 HOH HOH . 
F 4 HOH A 14 514 45 HOH HOH . 
F 4 HOH A 15 515 108 HOH HOH . 
F 4 HOH A 16 516 12 HOH HOH . 
F 4 HOH A 17 517 85 HOH HOH . 
F 4 HOH A 18 518 22 HOH HOH . 
F 4 HOH A 19 519 99 HOH HOH . 
F 4 HOH A 20 520 48 HOH HOH . 
F 4 HOH A 21 521 20 HOH HOH . 
F 4 HOH A 22 522 103 HOH HOH . 
F 4 HOH A 23 523 50 HOH HOH . 
F 4 HOH A 24 524 143 HOH HOH . 
F 4 HOH A 25 525 102 HOH HOH . 
F 4 HOH A 26 526 10 HOH HOH . 
F 4 HOH A 27 527 146 HOH HOH . 
F 4 HOH A 28 528 14 HOH HOH . 
F 4 HOH A 29 529 30 HOH HOH . 
F 4 HOH A 30 530 57 HOH HOH . 
F 4 HOH A 31 531 97 HOH HOH . 
F 4 HOH A 32 532 63 HOH HOH . 
F 4 HOH A 33 533 74 HOH HOH . 
F 4 HOH A 34 534 124 HOH HOH . 
F 4 HOH A 35 535 47 HOH HOH . 
F 4 HOH A 36 536 88 HOH HOH . 
F 4 HOH A 37 537 3 HOH HOH . 
F 4 HOH A 38 538 126 HOH HOH . 
F 4 HOH A 39 539 90 HOH HOH . 
F 4 HOH A 40 540 175 HOH HOH . 
F 4 HOH A 41 541 69 HOH HOH . 
F 4 HOH A 42 542 46 HOH HOH . 
F 4 HOH A 43 543 4 HOH HOH . 
F 4 HOH A 44 544 38 HOH HOH . 
F 4 HOH A 45 545 79 HOH HOH . 
F 4 HOH A 46 546 27 HOH HOH . 
F 4 HOH A 47 547 66 HOH HOH . 
F 4 HOH A 48 548 83 HOH HOH . 
F 4 HOH A 49 549 37 HOH HOH . 
F 4 HOH A 50 550 34 HOH HOH . 
F 4 HOH A 51 551 130 HOH HOH . 
F 4 HOH A 52 552 131 HOH HOH . 
F 4 HOH A 53 553 36 HOH HOH . 
F 4 HOH A 54 554 89 HOH HOH . 
F 4 HOH A 55 555 55 HOH HOH . 
F 4 HOH A 56 556 51 HOH HOH . 
F 4 HOH A 57 557 70 HOH HOH . 
F 4 HOH A 58 558 86 HOH HOH . 
F 4 HOH A 59 559 16 HOH HOH . 
F 4 HOH A 60 560 2 HOH HOH . 
F 4 HOH A 61 561 77 HOH HOH . 
F 4 HOH A 62 562 32 HOH HOH . 
F 4 HOH A 63 563 68 HOH HOH . 
F 4 HOH A 64 564 43 HOH HOH . 
F 4 HOH A 65 565 155 HOH HOH . 
F 4 HOH A 66 566 106 HOH HOH . 
F 4 HOH A 67 567 7 HOH HOH . 
F 4 HOH A 68 568 65 HOH HOH . 
F 4 HOH A 69 569 49 HOH HOH . 
F 4 HOH A 70 570 171 HOH HOH . 
F 4 HOH A 71 571 101 HOH HOH . 
F 4 HOH A 72 572 8 HOH HOH . 
F 4 HOH A 73 573 18 HOH HOH . 
F 4 HOH A 74 574 62 HOH HOH . 
F 4 HOH A 75 575 173 HOH HOH . 
F 4 HOH A 76 576 42 HOH HOH . 
F 4 HOH A 77 577 115 HOH HOH . 
F 4 HOH A 78 578 15 HOH HOH . 
F 4 HOH A 79 579 93 HOH HOH . 
F 4 HOH A 80 580 116 HOH HOH . 
F 4 HOH A 81 581 151 HOH HOH . 
F 4 HOH A 82 582 24 HOH HOH . 
F 4 HOH A 83 583 13 HOH HOH . 
F 4 HOH A 84 584 19 HOH HOH . 
F 4 HOH A 85 585 9 HOH HOH . 
F 4 HOH A 86 586 109 HOH HOH . 
F 4 HOH A 87 587 144 HOH HOH . 
F 4 HOH A 88 588 141 HOH HOH . 
F 4 HOH A 89 589 167 HOH HOH . 
F 4 HOH A 90 590 128 HOH HOH . 
F 4 HOH A 91 591 168 HOH HOH . 
F 4 HOH A 92 592 164 HOH HOH . 
F 4 HOH A 93 593 56 HOH HOH . 
F 4 HOH A 94 594 53 HOH HOH . 
F 4 HOH A 95 595 152 HOH HOH . 
F 4 HOH A 96 596 60 HOH HOH . 
F 4 HOH A 97 597 26 HOH HOH . 
F 4 HOH A 98 598 114 HOH HOH . 
F 4 HOH A 99 599 84 HOH HOH . 
F 4 HOH A 100 600 161 HOH HOH . 
F 4 HOH A 101 601 178 HOH HOH . 
F 4 HOH A 102 602 160 HOH HOH . 
F 4 HOH A 103 603 28 HOH HOH . 
F 4 HOH A 104 604 113 HOH HOH . 
F 4 HOH A 105 605 139 HOH HOH . 
F 4 HOH A 106 606 11 HOH HOH . 
F 4 HOH A 107 607 110 HOH HOH . 
F 4 HOH A 108 608 98 HOH HOH . 
F 4 HOH A 109 609 21 HOH HOH . 
F 4 HOH A 110 610 35 HOH HOH . 
F 4 HOH A 111 611 82 HOH HOH . 
F 4 HOH A 112 612 159 HOH HOH . 
F 4 HOH A 113 613 31 HOH HOH . 
F 4 HOH A 114 614 136 HOH HOH . 
F 4 HOH A 115 615 72 HOH HOH . 
F 4 HOH A 116 616 41 HOH HOH . 
F 4 HOH A 117 617 87 HOH HOH . 
F 4 HOH A 118 618 145 HOH HOH . 
F 4 HOH A 119 619 94 HOH HOH . 
F 4 HOH A 120 620 147 HOH HOH . 
F 4 HOH A 121 621 29 HOH HOH . 
F 4 HOH A 122 622 123 HOH HOH . 
F 4 HOH A 123 623 17 HOH HOH . 
F 4 HOH A 124 624 121 HOH HOH . 
F 4 HOH A 125 625 122 HOH HOH . 
F 4 HOH A 126 626 40 HOH HOH . 
F 4 HOH A 127 627 158 HOH HOH . 
F 4 HOH A 128 628 44 HOH HOH . 
F 4 HOH A 129 629 111 HOH HOH . 
F 4 HOH A 130 630 132 HOH HOH . 
F 4 HOH A 131 631 80 HOH HOH . 
F 4 HOH A 132 632 59 HOH HOH . 
F 4 HOH A 133 633 1 HOH HOH . 
F 4 HOH A 134 634 100 HOH HOH . 
F 4 HOH A 135 635 119 HOH HOH . 
F 4 HOH A 136 636 129 HOH HOH . 
F 4 HOH A 137 637 78 HOH HOH . 
F 4 HOH A 138 638 64 HOH HOH . 
F 4 HOH A 139 639 142 HOH HOH . 
F 4 HOH A 140 640 95 HOH HOH . 
F 4 HOH A 141 641 140 HOH HOH . 
F 4 HOH A 142 642 172 HOH HOH . 
F 4 HOH A 143 643 112 HOH HOH . 
F 4 HOH A 144 644 39 HOH HOH . 
F 4 HOH A 145 645 138 HOH HOH . 
F 4 HOH A 146 646 174 HOH HOH . 
F 4 HOH A 147 647 120 HOH HOH . 
F 4 HOH A 148 648 156 HOH HOH . 
F 4 HOH A 149 649 127 HOH HOH . 
F 4 HOH A 150 650 91 HOH HOH . 
F 4 HOH A 151 651 135 HOH HOH . 
F 4 HOH A 152 652 165 HOH HOH . 
F 4 HOH A 153 653 76 HOH HOH . 
F 4 HOH A 154 654 125 HOH HOH . 
F 4 HOH A 155 655 117 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 27.468 26.673 49.058 1 66.8 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . B 2 26.94 25.557 48.199 1 54.99 -1 O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . B 2 28.184 26.178 50.289 1 57.7 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . B 2 26.428 27.713 49.366 1 62.97 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . B 2 28.448 28.49 47.008 1 63.81 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . B 2 27.02 28.873 46.844 1 56.49 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . B 2 29.417 29.595 47.278 1 51.07 -1 O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . B 2 28.576 27.412 48.178 1 55.14 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . B 2 28.942 27.635 45.741 1 48.58 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . B 2 28.953 26.187 45.796 1 40.87 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . B 2 30.371 25.682 45.907 1 37.02 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . B 2 31.253 26.51 45.105 1 29.4 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . B 2 30.976 25.687 47.317 1 37.17 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . B 2 31.87 24.596 47.485 1 35.34 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . B 2 31.721 27.022 47.34 1 35.47 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . B 2 32.747 27.059 48.306 1 32.38 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . B 2 32.262 27.068 45.915 1 30.08 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . B 2 32.555 28.414 45.44 1 27.83 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . B 2 31.647 29.415 45.213 1 27.67 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . B 2 32.192 30.526 44.791 1 25.56 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . B 2 33.548 30.247 44.739 1 24.16 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . B 2 34.66 31.025 44.366 1 24 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . B 2 34.574 32.29 43.966 1 20.36 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . B 2 35.879 30.441 44.428 1 21.09 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . B 2 35.955 29.169 44.834 1 25.79 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . B 2 34.982 28.343 45.207 1 24.84 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . B 2 33.786 28.946 45.137 1 25.03 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#