data_8HOZ # _model_server_result.job_id 5-aSIPX8h-daHOWgDEjLjg _model_server_result.datetime_utc '2024-11-23 09:35:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hoz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8HOZ # _exptl.entry_id 8HOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.542 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HOZ _cell.length_a 45.667 _cell.length_b 63.546 _cell.length_c 104.671 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id 4WI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 4WI _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.765 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H34 F3 N5 O4' _chem_comp.formula_weight 501.542 _chem_comp.id 4WI _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PF-07321332, bound form;nirmatrelvir, bound form;Paxlovid, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C8 4WI doub 1 n n C8 N2 4WI sing 2 n n C8 C5 4WI sing 3 n n N2 C7 4WI sing 4 n n C4 C5 4WI sing 5 n n C4 C2 4WI sing 6 n n C5 C6 4WI sing 7 n n N5 C3 4WI doub 8 n n C3 C2 4WI sing 9 n n C7 C6 4WI sing 10 n n C2 N1 4WI sing 11 n n N1 C1 4WI sing 12 n n F1 C22 4WI sing 13 n n O3 C13 4WI doub 14 n n C1 C9 4WI sing 15 n n C1 O2 4WI doub 16 n n F3 C22 4WI sing 17 n n C23 C15 4WI sing 18 n n C22 F2 4WI sing 19 n n C22 C21 4WI sing 20 n n C9 N3 4WI sing 21 n n C9 C12 4WI sing 22 n n C13 N3 4WI sing 23 n n C13 C14 4WI sing 24 n n N4 C21 4WI sing 25 n n N4 C14 4WI sing 26 n n C19 C18 4WI sing 27 n n N3 C10 4WI sing 28 n n C21 O4 4WI doub 29 n n C12 C18 4WI sing 30 n n C12 C11 4WI sing 31 n n C14 C15 4WI sing 32 n n C15 C17 4WI sing 33 n n C15 C16 4WI sing 34 n n C18 C20 4WI sing 35 n n C18 C11 4WI sing 36 n n C10 C11 4WI sing 37 n n C3 H33 4WI sing 38 n n C6 H5 4WI sing 39 n n C6 H6 4WI sing 40 n n C7 H7 4WI sing 41 n n C7 H8 4WI sing 42 n n C10 H11 4WI sing 43 n n C10 H12 4WI sing 44 n n C5 H4 4WI sing 45 n n C9 H10 4WI sing 46 n n C11 H13 4WI sing 47 n n C12 H14 4WI sing 48 n n C19 H23 4WI sing 49 n n C19 H24 4WI sing 50 n n C19 H25 4WI sing 51 n n C20 H26 4WI sing 52 n n C20 H27 4WI sing 53 n n C20 H28 4WI sing 54 n n C16 H17 4WI sing 55 n n C16 H19 4WI sing 56 n n C16 H18 4WI sing 57 n n C17 H20 4WI sing 58 n n C17 H21 4WI sing 59 n n C17 H22 4WI sing 60 n n C23 H29 4WI sing 61 n n C23 H30 4WI sing 62 n n C23 H31 4WI sing 63 n n C4 H2 4WI sing 64 n n C4 H3 4WI sing 65 n n C2 H32 4WI sing 66 n n C14 H15 4WI sing 67 n n N5 H36 4WI sing 68 n n N2 H9 4WI sing 69 n n N1 H1 4WI sing 70 n n N4 H16 4WI sing 71 n n # _atom_sites.entry_id 8HOZ _atom_sites.fract_transf_matrix[1][1] 0.021898 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4WI A 1 401 401 4WI 4WI . C 3 HOH A 1 501 6 HOH HOH . C 3 HOH A 2 502 11 HOH HOH . C 3 HOH A 3 503 8 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 1 HOH HOH . C 3 HOH A 6 506 5 HOH HOH . C 3 HOH A 7 507 2 HOH HOH . C 3 HOH A 8 508 33 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 16 HOH HOH . C 3 HOH A 11 511 22 HOH HOH . C 3 HOH A 12 512 3 HOH HOH . C 3 HOH A 13 513 24 HOH HOH . C 3 HOH A 14 514 25 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 18 HOH HOH . C 3 HOH A 17 517 41 HOH HOH . C 3 HOH A 18 518 23 HOH HOH . C 3 HOH A 19 519 7 HOH HOH . C 3 HOH A 20 520 14 HOH HOH . C 3 HOH A 21 521 38 HOH HOH . C 3 HOH A 22 522 12 HOH HOH . C 3 HOH A 23 523 27 HOH HOH . C 3 HOH A 24 524 36 HOH HOH . C 3 HOH A 25 525 21 HOH HOH . C 3 HOH A 26 526 19 HOH HOH . C 3 HOH A 27 527 26 HOH HOH . C 3 HOH A 28 528 34 HOH HOH . C 3 HOH A 29 529 39 HOH HOH . C 3 HOH A 30 530 40 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 32 HOH HOH . C 3 HOH A 33 533 10 HOH HOH . C 3 HOH A 34 534 29 HOH HOH . C 3 HOH A 35 535 17 HOH HOH . C 3 HOH A 36 536 30 HOH HOH . C 3 HOH A 37 537 28 HOH HOH . C 3 HOH A 38 538 35 HOH HOH . C 3 HOH A 39 539 20 HOH HOH . C 3 HOH A 40 540 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 4WI . . . B 2 -16.169 10.559 -27.482 0.91 37.65 ? C8 4WI 401 A 1 HETATM 2 C C3 4WI . . . B 2 -17.465 11.826 -22.835 0.91 37.22 ? C3 4WI 401 A 1 HETATM 3 C C1 4WI . . . B 2 -18.969 13.93 -25.375 0.91 38.09 ? C1 4WI 401 A 1 HETATM 4 C C13 4WI . . . B 2 -19.027 14.946 -28.462 0.91 38.3 ? C13 4WI 401 A 1 HETATM 5 C C21 4WI . . . B 2 -19.017 17.265 -30.821 0.91 39.33 ? C21 4WI 401 A 1 HETATM 6 C C6 4WI . . . B 2 -18.567 10.595 -27.085 0.91 37.41 ? C6 4WI 401 A 1 HETATM 7 C C7 4WI . . . B 2 -18.151 9.451 -28.115 0.91 37.19 ? C7 4WI 401 A 1 HETATM 8 C C10 4WI . . . B 2 -20.773 16.311 -26.835 0.91 38.62 ? C10 4WI 401 A 1 HETATM 9 C C5 4WI . . . B 2 -17.392 11.162 -26.623 0.91 37.36 ? C5 4WI 401 A 1 HETATM 10 C C9 4WI . . . B 2 -18.749 15.322 -25.971 0.91 38.14 ? C9 4WI 401 A 1 HETATM 11 C C11 4WI . . . B 2 -20.653 16.903 -25.552 0.91 38.95 ? C11 4WI 401 A 1 HETATM 12 C C12 4WI . . . B 2 -19.279 16.475 -24.981 0.91 38.29 ? C12 4WI 401 A 1 HETATM 13 C C18 4WI . . . B 2 -19.72 17.951 -24.911 0.91 38.64 ? C18 4WI 401 A 1 HETATM 14 C C19 4WI . . . B 2 -18.978 18.874 -25.904 0.91 38.74 ? C19 4WI 401 A 1 HETATM 15 C C20 4WI . . . B 2 -20.149 18.474 -23.52 0.91 38.99 ? C20 4WI 401 A 1 HETATM 16 C C16 4WI . . . B 2 -21.053 13.048 -28.979 0.91 37.72 ? C16 4WI 401 A 1 HETATM 17 C C17 4WI . . . B 2 -21.758 14.244 -31.093 0.91 37.73 ? C17 4WI 401 A 1 HETATM 18 C C23 4WI . . . B 2 -19.518 13.076 -31.001 0.91 38.02 ? C23 4WI 401 A 1 HETATM 19 C C4 4WI . . . B 2 -17.195 10.828 -25.113 0.91 37.2 ? C4 4WI 401 A 1 HETATM 20 C C2 4WI . . . B 2 -17.982 11.844 -24.266 0.91 37.68 ? C2 4WI 401 A 1 HETATM 21 C C14 4WI . . . B 2 -19.92 15.208 -29.675 0.91 38.6 ? C14 4WI 401 A 1 HETATM 22 C C22 4WI . . . B 2 -18.192 17.902 -31.956 0.91 39.92 ? C22 4WI 401 A 1 HETATM 23 C C15 4WI . . . B 2 -20.556 13.887 -30.181 0.91 38.35 ? C15 4WI 401 A 1 HETATM 24 N N5 4WI . . . B 2 -17.725 10.849 -22.085 0.91 36.9 ? N5 4WI 401 A 1 HETATM 25 N N2 4WI . . . B 2 -16.628 9.597 -28.313 0.91 37.65 ? N2 4WI 401 A 1 HETATM 26 N N3 4WI . . . B 2 -19.442 15.474 -27.118 0.91 38.02 ? N3 4WI 401 A 1 HETATM 27 N N1 4WI . . . B 2 -17.798 13.175 -24.837 0.91 37.93 ? N1 4WI 401 A 1 HETATM 28 N N4 4WI . . . B 2 -19.146 15.804 -30.744 0.91 38.69 ? N4 4WI 401 A 1 HETATM 29 O O1 4WI . . . B 2 -15.035 10.907 -27.396 0.91 37.42 ? O1 4WI 401 A 1 HETATM 30 O O2 4WI . . . B 2 -20.057 13.45 -25.342 0.91 38.48 ? O2 4WI 401 A 1 HETATM 31 O O3 4WI . . . B 2 -18.009 14.338 -28.564 0.91 38.1 ? O3 4WI 401 A 1 HETATM 32 O O4 4WI . . . B 2 -19.54 17.952 -30.01 0.91 39.89 ? O4 4WI 401 A 1 HETATM 33 F F1 4WI . . . B 2 -17.988 16.98 -32.947 0.91 39.99 ? F1 4WI 401 A 1 HETATM 34 F F2 4WI . . . B 2 -16.983 18.307 -31.459 0.91 40.28 ? F2 4WI 401 A 1 HETATM 35 F F3 4WI . . . B 2 -18.87 18.979 -32.461 0.91 40.65 ? F3 4WI 401 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #