data_8HPD # _model_server_result.job_id hTORwHCO7Jx-lO38v_3kDQ _model_server_result.datetime_utc '2024-11-13 01:33:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":302}' # _entry.id 8HPD # _exptl.entry_id 8HPD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 600.87 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Siphonaxanthin _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HPD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 W N N ? 5 X N N ? 5 PA N N ? 5 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TRP 37 A TRP 11 1_555 G MG CHL . A CHL 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc2 A O VAL 134 A VAL 108 1_555 K MG CHL . A CHL 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc3 A OD1 ASN 198 A ASN 172 1_555 R MG CLA . A CLA 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc4 B O TRP 39 B TRP 11 1_555 Z MG CHL . B CHL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc5 B OE2 GLU 81 B GLU 53 1_555 AA MG CHL . B CHL 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc6 B O VAL 136 B VAL 108 1_555 DA MG CHL . B CHL 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc7 B OE2 GLU 198 B GLU 170 1_555 IA MG CLA . B CLA 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc8 B OD1 ASN 201 B ASN 173 1_555 KA MG CLA . B CLA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc9 C O TRP 41 C TRP 11 1_555 SA MG CHL . C CHL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc10 C O ILE 138 C ILE 108 1_555 WA MG CHL . C CHL 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc11 C OD1 ASN 202 C ASN 172 1_555 DB MG CLA . C CLA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? # _chem_comp.formula 'C40 H56 O4' _chem_comp.formula_weight 600.87 _chem_comp.id 0IE _chem_comp.mon_nstd_flag . _chem_comp.name Siphonaxanthin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O42 C26 0IE sing 1 n n C27 C26 0IE sing 2 n n C27 C28 0IE doub 3 n n C26 C25 0IE sing 4 n n C41 C28 0IE sing 5 n n C28 C19 0IE sing 6 n n C25 C24 0IE sing 7 n n C19 C24 0IE sing 8 n n C19 C18 0IE sing 9 n n C24 C44 0IE sing 10 n n C24 C43 0IE sing 11 n n C18 C17 0IE doub 12 e n C17 C16 0IE sing 13 n n C16 C23 0IE sing 14 n n C16 C15 0IE doub 15 e n C15 C14 0IE sing 16 n n C14 C13 0IE doub 17 e n C13 C12 0IE sing 18 n n C12 C11 0IE doub 19 e n C12 C22 0IE sing 20 n n C11 C10 0IE sing 21 n n C21 C7 0IE sing 22 n n C9 C10 0IE doub 23 e n C9 C8 0IE sing 24 n n C8 C7 0IE doub 25 e n C7 C6 0IE sing 26 n n C6 C5 0IE doub 27 e n O29 C20 0IE sing 28 n n C5 C4 0IE sing 29 n n C20 C3 0IE sing 30 n n C4 C3 0IE doub 31 e n C3 C2 0IE sing 32 n n C2 C30 0IE sing 33 n n C2 O1 0IE doub 34 n n C30 C31 0IE sing 35 n n C37 C36 0IE sing 36 n n C31 C36 0IE doub 37 n n C31 C32 0IE sing 38 n n C38 C32 0IE sing 39 n n C36 C35 0IE sing 40 n n C32 C39 0IE sing 41 n n C32 C33 0IE sing 42 n n C35 C34 0IE sing 43 n n C33 C34 0IE sing 44 n n C34 O40 0IE sing 45 n n C6 H1 0IE sing 46 n n C5 H2 0IE sing 47 n n C4 H3 0IE sing 48 n n C10 H4 0IE sing 49 n n C11 H5 0IE sing 50 n n C13 H6 0IE sing 51 n n C14 H7 0IE sing 52 n n C15 H8 0IE sing 53 n n C17 H9 0IE sing 54 n n C18 H10 0IE sing 55 n n C19 H11 0IE sing 56 n n C20 H12 0IE sing 57 n n C20 H13 0IE sing 58 n n C21 H14 0IE sing 59 n n C21 H15 0IE sing 60 n n C21 H16 0IE sing 61 n n C22 H17 0IE sing 62 n n C22 H18 0IE sing 63 n n C22 H19 0IE sing 64 n n C23 H20 0IE sing 65 n n C23 H21 0IE sing 66 n n C23 H22 0IE sing 67 n n C25 H23 0IE sing 68 n n C25 H24 0IE sing 69 n n C26 H25 0IE sing 70 n n C27 H26 0IE sing 71 n n C30 H27 0IE sing 72 n n C30 H28 0IE sing 73 n n C33 H29 0IE sing 74 n n C33 H30 0IE sing 75 n n C34 H31 0IE sing 76 n n C35 H32 0IE sing 77 n n C35 H33 0IE sing 78 n n C37 H34 0IE sing 79 n n C37 H35 0IE sing 80 n n C37 H36 0IE sing 81 n n C38 H37 0IE sing 82 n n C38 H38 0IE sing 83 n n C38 H39 0IE sing 84 n n C39 H40 0IE sing 85 n n C39 H41 0IE sing 86 n n C39 H42 0IE sing 87 n n C41 H43 0IE sing 88 n n C41 H44 0IE sing 89 n n C41 H45 0IE sing 90 n n C43 H46 0IE sing 91 n n C43 H47 0IE sing 92 n n C43 H48 0IE sing 93 n n C44 H49 0IE sing 94 n n C44 H50 0IE sing 95 n n C44 H51 0IE sing 96 n n C8 H52 0IE sing 97 n n C9 H53 0IE sing 98 n n O29 H54 0IE sing 99 n n O40 H55 0IE sing 100 n n O42 H56 0IE sing 101 n n # _atom_sites.entry_id 8HPD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0UR A 1 301 520 0UR 0UR . E 5 0IE A 1 302 521 0IE 0IE . F 6 NEX A 1 303 523 NEX NEX . G 7 CHL A 1 304 601 CHL CHL . H 7 CHL A 1 305 602 CHL CHL . I 8 CLA A 1 306 603 CLA CLA . J 8 CLA A 1 307 604 CLA CLA . K 7 CHL A 1 308 605 CHL CHL . L 7 CHL A 1 309 606 CHL CHL . M 7 CHL A 1 310 607 CHL CHL . N 7 CHL A 1 311 608 CHL CHL . O 7 CHL A 1 312 609 CHL CHL . P 8 CLA A 1 313 610 CLA CLA . Q 8 CLA A 1 314 611 CLA CLA . R 8 CLA A 1 315 612 CLA CLA . S 8 CLA A 1 316 613 CLA CLA . T 7 CHL A 1 317 614 CHL CHL . U 9 LHG A 1 318 630 LHG LHG . V 4 0UR B 1 301 520 0UR 0UR . W 5 0IE B 1 302 521 0IE 0IE . X 5 0IE B 1 303 522 0IE 0IE . Y 6 NEX B 1 304 523 NEX NEX . Z 7 CHL B 1 305 601 CHL CHL . AA 7 CHL B 1 306 602 CHL CHL . BA 8 CLA B 1 307 603 CLA CLA . CA 8 CLA B 1 308 604 CLA CLA . DA 7 CHL B 1 309 605 CHL CHL . EA 7 CHL B 1 310 606 CHL CHL . FA 7 CHL B 1 311 607 CHL CHL . GA 7 CHL B 1 312 608 CHL CHL . HA 7 CHL B 1 313 609 CHL CHL . IA 8 CLA B 1 314 610 CLA CLA . JA 8 CLA B 1 315 611 CLA CLA . KA 8 CLA B 1 316 612 CLA CLA . LA 8 CLA B 1 317 613 CLA CLA . MA 7 CHL B 1 318 614 CHL CHL . NA 9 LHG B 1 319 630 LHG LHG . OA 4 0UR C 1 301 520 0UR 0UR . PA 5 0IE C 1 302 521 0IE 0IE . QA 5 0IE C 1 303 522 0IE 0IE . RA 6 NEX C 1 304 523 NEX NEX . SA 7 CHL C 1 305 601 CHL CHL . TA 7 CHL C 1 306 602 CHL CHL . UA 8 CLA C 1 307 603 CLA CLA . VA 8 CLA C 1 308 604 CLA CLA . WA 7 CHL C 1 309 605 CHL CHL . XA 7 CHL C 1 310 606 CHL CHL . YA 7 CHL C 1 311 607 CHL CHL . ZA 7 CHL C 1 312 608 CHL CHL . AB 7 CHL C 1 313 609 CHL CHL . BB 8 CLA C 1 314 610 CLA CLA . CB 8 CLA C 1 315 611 CLA CLA . DB 8 CLA C 1 316 612 CLA CLA . EB 8 CLA C 1 317 613 CLA CLA . FB 7 CHL C 1 318 614 CHL CHL . GB 9 LHG C 1 319 630 LHG LHG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 0IE . . . W 5 128.923 118.813 119.292 1 85.55 ? O1 0IE 302 B 1 HETATM 2 C C7 0IE . . . W 5 133.751 122.713 121.014 1 85.55 ? C7 0IE 302 B 1 HETATM 3 C C6 0IE . . . W 5 132.574 122.051 120.598 1 85.55 ? C6 0IE 302 B 1 HETATM 4 C C5 0IE . . . W 5 132.269 120.697 120.638 1 85.55 ? C5 0IE 302 B 1 HETATM 5 C C4 0IE . . . W 5 131.063 120.061 120.372 1 85.55 ? C4 0IE 302 B 1 HETATM 6 C C3 0IE . . . W 5 130.737 118.771 120.594 1 85.55 ? C3 0IE 302 B 1 HETATM 7 C C2 0IE . . . W 5 129.55 118.236 120.162 1 85.55 ? C2 0IE 302 B 1 HETATM 8 C C10 0IE . . . W 5 135.158 126.276 121.359 1 85.55 ? C10 0IE 302 B 1 HETATM 9 C C11 0IE . . . W 5 136.191 127.079 121.823 1 85.55 ? C11 0IE 302 B 1 HETATM 10 C C12 0IE . . . W 5 136.3 128.483 121.78 1 85.55 ? C12 0IE 302 B 1 HETATM 11 C C13 0IE . . . W 5 137.423 129.218 122.202 1 85.55 ? C13 0IE 302 B 1 HETATM 12 C C14 0IE . . . W 5 137.743 130.534 121.904 1 85.55 ? C14 0IE 302 B 1 HETATM 13 C C15 0IE . . . W 5 138.781 131.307 122.394 1 85.55 ? C15 0IE 302 B 1 HETATM 14 C C16 0IE . . . W 5 139.607 132.216 121.708 1 85.55 ? C16 0IE 302 B 1 HETATM 15 C C17 0IE . . . W 5 140.928 132.491 122.107 1 85.55 ? C17 0IE 302 B 1 HETATM 16 C C18 0IE . . . W 5 141.635 133.593 121.811 1 85.55 ? C18 0IE 302 B 1 HETATM 17 C C19 0IE . . . W 5 142.739 134.219 122.619 1 85.55 ? C19 0IE 302 B 1 HETATM 18 C C20 0IE . . . W 5 131.726 117.909 121.33 1 85.55 ? C20 0IE 302 B 1 HETATM 19 C C21 0IE . . . W 5 134.819 121.908 121.647 1 85.55 ? C21 0IE 302 B 1 HETATM 20 C C22 0IE . . . W 5 135.157 129.243 121.247 1 85.55 ? C22 0IE 302 B 1 HETATM 21 C C23 0IE . . . W 5 139.03 132.892 120.525 1 85.55 ? C23 0IE 302 B 1 HETATM 22 C C24 0IE . . . W 5 142.24 135.395 123.474 1 85.55 ? C24 0IE 302 B 1 HETATM 23 C C25 0IE . . . W 5 143.419 136.163 124.089 1 85.55 ? C25 0IE 302 B 1 HETATM 24 C C26 0IE . . . W 5 144.376 136.669 123.019 1 85.55 ? C26 0IE 302 B 1 HETATM 25 C C27 0IE . . . W 5 144.706 135.596 122.027 1 85.55 ? C27 0IE 302 B 1 HETATM 26 C C28 0IE . . . W 5 143.875 134.618 121.696 1 85.55 ? C28 0IE 302 B 1 HETATM 27 C C30 0IE . . . W 5 129.003 116.95 120.718 1 85.55 ? C30 0IE 302 B 1 HETATM 28 C C31 0IE . . . W 5 127.559 116.722 120.349 1 85.55 ? C31 0IE 302 B 1 HETATM 29 C C32 0IE . . . W 5 126.531 117.018 121.447 1 85.55 ? C32 0IE 302 B 1 HETATM 30 C C33 0IE . . . W 5 125.143 116.47 121.106 1 85.55 ? C33 0IE 302 B 1 HETATM 31 C C34 0IE . . . W 5 124.754 116.692 119.659 1 85.55 ? C34 0IE 302 B 1 HETATM 32 C C35 0IE . . . W 5 125.759 116.01 118.754 1 85.55 ? C35 0IE 302 B 1 HETATM 33 C C36 0IE . . . W 5 127.188 116.29 119.143 1 85.55 ? C36 0IE 302 B 1 HETATM 34 C C37 0IE . . . W 5 128.167 116.028 118.027 1 85.55 ? C37 0IE 302 B 1 HETATM 35 C C38 0IE . . . W 5 126.419 118.536 121.682 1 85.55 ? C38 0IE 302 B 1 HETATM 36 C C39 0IE . . . W 5 127.008 116.377 122.763 1 85.55 ? C39 0IE 302 B 1 HETATM 37 C C41 0IE . . . W 5 143.99 133.838 120.418 1 85.55 ? C41 0IE 302 B 1 HETATM 38 C C43 0IE . . . W 5 141.34 134.861 124.599 1 85.55 ? C43 0IE 302 B 1 HETATM 39 C C44 0IE . . . W 5 141.403 136.344 122.604 1 85.55 ? C44 0IE 302 B 1 HETATM 40 C C8 0IE . . . W 5 133.967 124.098 120.86 1 85.55 ? C8 0IE 302 B 1 HETATM 41 C C9 0IE . . . W 5 134.894 124.914 121.495 1 85.55 ? C9 0IE 302 B 1 HETATM 42 O O29 0IE . . . W 5 132.238 116.932 120.464 1 85.55 ? O29 0IE 302 B 1 HETATM 43 O O40 0IE . . . W 5 123.443 116.184 119.415 1 85.55 ? O40 0IE 302 B 1 HETATM 44 O O42 0IE . . . W 5 145.567 137.204 123.629 1 85.55 ? O42 0IE 302 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 44 #