data_8HPD
#
_model_server_result.job_id            B53SqK0BUOSzv7Zz-HM57g 
_model_server_result.datetime_utc      '2024-11-25 02:50:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hpd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":303}' 
#
_entry.id    8HPD 
#
_exptl.entry_id    8HPD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              600.87 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Siphonaxanthin 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HPD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HPD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 W N N 
? 5 X N N 
? 5 PA N N 
? 5 QA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O TRP 37 A TRP 11 1_555 G MG CHL . A CHL 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? 
metalc ? metalc2 A O VAL 134 A VAL 108 1_555 K MG CHL . A CHL 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc3 A OD1 ASN 198 A ASN 172 1_555 R MG CLA . A CLA 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? 
metalc ? metalc4 B O TRP 39 B TRP 11 1_555 Z MG CHL . B CHL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? 
metalc ? metalc5 B OE2 GLU 81 B GLU 53 1_555 AA MG CHL . B CHL 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? 
metalc ? metalc6 B O VAL 136 B VAL 108 1_555 DA MG CHL . B CHL 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? 
metalc ? metalc7 B OE2 GLU 198 B GLU 170 1_555 IA MG CLA . B CLA 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? 
metalc ? metalc8 B OD1 ASN 201 B ASN 173 1_555 KA MG CLA . B CLA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? 
metalc ? metalc9 C O TRP 41 C TRP 11 1_555 SA MG CHL . C CHL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? 
metalc ? metalc10 C O ILE 138 C ILE 108 1_555 WA MG CHL . C CHL 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? 
metalc ? metalc11 C OD1 ASN 202 C ASN 172 1_555 DB MG CLA . C CLA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? 
#
_chem_comp.formula           'C40 H56 O4' 
_chem_comp.formula_weight    600.87 
_chem_comp.id                0IE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Siphonaxanthin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O42 C26 0IE sing 1 n n 
C27 C26 0IE sing 2 n n 
C27 C28 0IE doub 3 n n 
C26 C25 0IE sing 4 n n 
C41 C28 0IE sing 5 n n 
C28 C19 0IE sing 6 n n 
C25 C24 0IE sing 7 n n 
C19 C24 0IE sing 8 n n 
C19 C18 0IE sing 9 n n 
C24 C44 0IE sing 10 n n 
C24 C43 0IE sing 11 n n 
C18 C17 0IE doub 12 e n 
C17 C16 0IE sing 13 n n 
C16 C23 0IE sing 14 n n 
C16 C15 0IE doub 15 e n 
C15 C14 0IE sing 16 n n 
C14 C13 0IE doub 17 e n 
C13 C12 0IE sing 18 n n 
C12 C11 0IE doub 19 e n 
C12 C22 0IE sing 20 n n 
C11 C10 0IE sing 21 n n 
C21 C7 0IE sing 22 n n 
C9 C10 0IE doub 23 e n 
C9 C8 0IE sing 24 n n 
C8 C7 0IE doub 25 e n 
C7 C6 0IE sing 26 n n 
C6 C5 0IE doub 27 e n 
O29 C20 0IE sing 28 n n 
C5 C4 0IE sing 29 n n 
C20 C3 0IE sing 30 n n 
C4 C3 0IE doub 31 e n 
C3 C2 0IE sing 32 n n 
C2 C30 0IE sing 33 n n 
C2 O1 0IE doub 34 n n 
C30 C31 0IE sing 35 n n 
C37 C36 0IE sing 36 n n 
C31 C36 0IE doub 37 n n 
C31 C32 0IE sing 38 n n 
C38 C32 0IE sing 39 n n 
C36 C35 0IE sing 40 n n 
C32 C39 0IE sing 41 n n 
C32 C33 0IE sing 42 n n 
C35 C34 0IE sing 43 n n 
C33 C34 0IE sing 44 n n 
C34 O40 0IE sing 45 n n 
C6 H1 0IE sing 46 n n 
C5 H2 0IE sing 47 n n 
C4 H3 0IE sing 48 n n 
C10 H4 0IE sing 49 n n 
C11 H5 0IE sing 50 n n 
C13 H6 0IE sing 51 n n 
C14 H7 0IE sing 52 n n 
C15 H8 0IE sing 53 n n 
C17 H9 0IE sing 54 n n 
C18 H10 0IE sing 55 n n 
C19 H11 0IE sing 56 n n 
C20 H12 0IE sing 57 n n 
C20 H13 0IE sing 58 n n 
C21 H14 0IE sing 59 n n 
C21 H15 0IE sing 60 n n 
C21 H16 0IE sing 61 n n 
C22 H17 0IE sing 62 n n 
C22 H18 0IE sing 63 n n 
C22 H19 0IE sing 64 n n 
C23 H20 0IE sing 65 n n 
C23 H21 0IE sing 66 n n 
C23 H22 0IE sing 67 n n 
C25 H23 0IE sing 68 n n 
C25 H24 0IE sing 69 n n 
C26 H25 0IE sing 70 n n 
C27 H26 0IE sing 71 n n 
C30 H27 0IE sing 72 n n 
C30 H28 0IE sing 73 n n 
C33 H29 0IE sing 74 n n 
C33 H30 0IE sing 75 n n 
C34 H31 0IE sing 76 n n 
C35 H32 0IE sing 77 n n 
C35 H33 0IE sing 78 n n 
C37 H34 0IE sing 79 n n 
C37 H35 0IE sing 80 n n 
C37 H36 0IE sing 81 n n 
C38 H37 0IE sing 82 n n 
C38 H38 0IE sing 83 n n 
C38 H39 0IE sing 84 n n 
C39 H40 0IE sing 85 n n 
C39 H41 0IE sing 86 n n 
C39 H42 0IE sing 87 n n 
C41 H43 0IE sing 88 n n 
C41 H44 0IE sing 89 n n 
C41 H45 0IE sing 90 n n 
C43 H46 0IE sing 91 n n 
C43 H47 0IE sing 92 n n 
C43 H48 0IE sing 93 n n 
C44 H49 0IE sing 94 n n 
C44 H50 0IE sing 95 n n 
C44 H51 0IE sing 96 n n 
C8 H52 0IE sing 97 n n 
C9 H53 0IE sing 98 n n 
O29 H54 0IE sing 99 n n 
O40 H55 0IE sing 100 n n 
O42 H56 0IE sing 101 n n 
#
_atom_sites.entry_id                     8HPD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 0UR A 1 301 520 0UR 0UR . 
E 5 0IE A 1 302 521 0IE 0IE . 
F 6 NEX A 1 303 523 NEX NEX . 
G 7 CHL A 1 304 601 CHL CHL . 
H 7 CHL A 1 305 602 CHL CHL . 
I 8 CLA A 1 306 603 CLA CLA . 
J 8 CLA A 1 307 604 CLA CLA . 
K 7 CHL A 1 308 605 CHL CHL . 
L 7 CHL A 1 309 606 CHL CHL . 
M 7 CHL A 1 310 607 CHL CHL . 
N 7 CHL A 1 311 608 CHL CHL . 
O 7 CHL A 1 312 609 CHL CHL . 
P 8 CLA A 1 313 610 CLA CLA . 
Q 8 CLA A 1 314 611 CLA CLA . 
R 8 CLA A 1 315 612 CLA CLA . 
S 8 CLA A 1 316 613 CLA CLA . 
T 7 CHL A 1 317 614 CHL CHL . 
U 9 LHG A 1 318 630 LHG LHG . 
V 4 0UR B 1 301 520 0UR 0UR . 
W 5 0IE B 1 302 521 0IE 0IE . 
X 5 0IE B 1 303 522 0IE 0IE . 
Y 6 NEX B 1 304 523 NEX NEX . 
Z 7 CHL B 1 305 601 CHL CHL . 
AA 7 CHL B 1 306 602 CHL CHL . 
BA 8 CLA B 1 307 603 CLA CLA . 
CA 8 CLA B 1 308 604 CLA CLA . 
DA 7 CHL B 1 309 605 CHL CHL . 
EA 7 CHL B 1 310 606 CHL CHL . 
FA 7 CHL B 1 311 607 CHL CHL . 
GA 7 CHL B 1 312 608 CHL CHL . 
HA 7 CHL B 1 313 609 CHL CHL . 
IA 8 CLA B 1 314 610 CLA CLA . 
JA 8 CLA B 1 315 611 CLA CLA . 
KA 8 CLA B 1 316 612 CLA CLA . 
LA 8 CLA B 1 317 613 CLA CLA . 
MA 7 CHL B 1 318 614 CHL CHL . 
NA 9 LHG B 1 319 630 LHG LHG . 
OA 4 0UR C 1 301 520 0UR 0UR . 
PA 5 0IE C 1 302 521 0IE 0IE . 
QA 5 0IE C 1 303 522 0IE 0IE . 
RA 6 NEX C 1 304 523 NEX NEX . 
SA 7 CHL C 1 305 601 CHL CHL . 
TA 7 CHL C 1 306 602 CHL CHL . 
UA 8 CLA C 1 307 603 CLA CLA . 
VA 8 CLA C 1 308 604 CLA CLA . 
WA 7 CHL C 1 309 605 CHL CHL . 
XA 7 CHL C 1 310 606 CHL CHL . 
YA 7 CHL C 1 311 607 CHL CHL . 
ZA 7 CHL C 1 312 608 CHL CHL . 
AB 7 CHL C 1 313 609 CHL CHL . 
BB 8 CLA C 1 314 610 CLA CLA . 
CB 8 CLA C 1 315 611 CLA CLA . 
DB 8 CLA C 1 316 612 CLA CLA . 
EB 8 CLA C 1 317 613 CLA CLA . 
FB 7 CHL C 1 318 614 CHL CHL . 
GB 9 LHG C 1 319 630 LHG LHG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 0IE . . . X 5 122.468 140.229 118.209 1 85.55 ? O1 0IE 303 B 1 
HETATM 2 C C7 0IE . . . X 5 128.25 141.239 114.145 1 85.55 ? C7 0IE 303 B 1 
HETATM 3 C C6 0IE . . . X 5 127.525 141.31 115.348 1 85.55 ? C6 0IE 303 B 1 
HETATM 4 C C5 0IE . . . X 5 126.178 141.067 115.558 1 85.55 ? C5 0IE 303 B 1 
HETATM 5 C C4 0IE . . . X 5 125.527 140.768 116.743 1 85.55 ? C4 0IE 303 B 1 
HETATM 6 C C3 0IE . . . X 5 124.275 140.306 116.909 1 85.55 ? C3 0IE 303 B 1 
HETATM 7 C C2 0IE . . . X 5 123.684 140.309 118.139 1 85.55 ? C2 0IE 303 B 1 
HETATM 8 C C10 0IE . . . X 5 131.84 141.408 112.815 1 85.55 ? C10 0IE 303 B 1 
HETATM 9 C C11 0IE . . . X 5 132.661 141.298 111.704 1 85.55 ? C11 0IE 303 B 1 
HETATM 10 C C12 0IE . . . X 5 134.053 141.488 111.616 1 85.55 ? C12 0IE 303 B 1 
HETATM 11 C C13 0IE . . . X 5 134.812 141.21 110.46 1 85.55 ? C13 0IE 303 B 1 
HETATM 12 C C14 0IE . . . X 5 136.186 141.283 110.277 1 85.55 ? C14 0IE 303 B 1 
HETATM 13 C C15 0IE . . . X 5 136.886 141.385 109.083 1 85.55 ? C15 0IE 303 B 1 
HETATM 14 C C16 0IE . . . X 5 138.02 140.664 108.658 1 85.55 ? C16 0IE 303 B 1 
HETATM 15 C C17 0IE . . . X 5 138.245 140.268 107.327 1 85.55 ? C17 0IE 303 B 1 
HETATM 16 C C18 0IE . . . X 5 139.391 139.756 106.845 1 85.55 ? C18 0IE 303 B 1 
HETATM 17 C C19 0IE . . . X 5 139.794 139.6 105.403 1 85.55 ? C19 0IE 303 B 1 
HETATM 18 C C20 0IE . . . X 5 123.519 139.761 115.727 1 85.55 ? C20 0IE 303 B 1 
HETATM 19 C C21 0IE . . . X 5 127.519 140.859 112.914 1 85.55 ? C21 0IE 303 B 1 
HETATM 20 C C22 0IE . . . X 5 134.757 142.013 112.808 1 85.55 ? C22 0IE 303 B 1 
HETATM 21 C C23 0IE . . . X 5 139.014 140.313 109.688 1 85.55 ? C23 0IE 303 B 1 
HETATM 22 C C24 0IE . . . X 5 140.287 138.177 105.084 1 85.55 ? C24 0IE 303 B 1 
HETATM 23 C C25 0IE . . . X 5 140.956 138.115 103.702 1 85.55 ? C25 0IE 303 B 1 
HETATM 24 C C26 0IE . . . X 5 142.102 139.109 103.579 1 85.55 ? C26 0IE 303 B 1 
HETATM 25 C C27 0IE . . . X 5 141.734 140.458 104.119 1 85.55 ? C27 0IE 303 B 1 
HETATM 26 C C28 0IE . . . X 5 140.812 140.669 105.047 1 85.55 ? C28 0IE 303 B 1 
HETATM 27 C C30 0IE . . . X 5 124.504 140.407 119.4 1 85.55 ? C30 0IE 303 B 1 
HETATM 28 C C31 0IE . . . X 5 124.025 139.55 120.544 1 85.55 ? C31 0IE 303 B 1 
HETATM 29 C C32 0IE . . . X 5 124.719 138.192 120.719 1 85.55 ? C32 0IE 303 B 1 
HETATM 30 C C33 0IE . . . X 5 123.945 137.266 121.662 1 85.55 ? C33 0IE 303 B 1 
HETATM 31 C C34 0IE . . . X 5 123.428 137.983 122.892 1 85.55 ? C34 0IE 303 B 1 
HETATM 32 C C35 0IE . . . X 5 122.484 139.091 122.468 1 85.55 ? C35 0IE 303 B 1 
HETATM 33 C C36 0IE . . . X 5 123.078 139.962 121.389 1 85.55 ? C36 0IE 303 B 1 
HETATM 34 C C37 0IE . . . X 5 122.505 141.357 121.358 1 85.55 ? C37 0IE 303 B 1 
HETATM 35 C C38 0IE . . . X 5 126.125 138.423 121.305 1 85.55 ? C38 0IE 303 B 1 
HETATM 36 C C39 0IE . . . X 5 124.887 137.489 119.359 1 85.55 ? C39 0IE 303 B 1 
HETATM 37 C C41 0IE . . . X 5 140.695 141.969 105.792 1 85.55 ? C41 0IE 303 B 1 
HETATM 38 C C43 0IE . . . X 5 139.093 137.212 105.108 1 85.55 ? C43 0IE 303 B 1 
HETATM 39 C C44 0IE . . . X 5 141.279 137.723 106.164 1 85.55 ? C44 0IE 303 B 1 
HETATM 40 C C8 0IE . . . X 5 129.629 141.507 114.043 1 85.55 ? C8 0IE 303 B 1 
HETATM 41 C C9 0IE . . . X 5 130.454 141.389 112.936 1 85.55 ? C9 0IE 303 B 1 
HETATM 42 O O29 0IE . . . X 5 123.142 138.438 116.014 1 85.55 ? O29 0IE 303 B 1 
HETATM 43 O O40 0IE . . . X 5 122.77 137.07 123.77 1 85.55 ? O40 0IE 303 B 1 
HETATM 44 O O42 0IE . . . X 5 142.534 139.226 102.21 1 85.55 ? O42 0IE 303 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#