data_8HPD # _model_server_result.job_id Paml2doDZTE_Z3gUfYjJBA _model_server_result.datetime_utc '2024-11-28 19:15:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":319}' # _entry.id 8HPD # _exptl.entry_id 8HPD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 722.97 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HPD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 U N N ? 9 NA N N ? 9 GB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TRP 37 A TRP 11 1_555 G MG CHL . A CHL 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc2 A O VAL 134 A VAL 108 1_555 K MG CHL . A CHL 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc3 A OD1 ASN 198 A ASN 172 1_555 R MG CLA . A CLA 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc4 B O TRP 39 B TRP 11 1_555 Z MG CHL . B CHL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc5 B OE2 GLU 81 B GLU 53 1_555 AA MG CHL . B CHL 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc6 B O VAL 136 B VAL 108 1_555 DA MG CHL . B CHL 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc7 B OE2 GLU 198 B GLU 170 1_555 IA MG CLA . B CLA 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc8 B OD1 ASN 201 B ASN 173 1_555 KA MG CLA . B CLA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc9 C O TRP 41 C TRP 11 1_555 SA MG CHL . C CHL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc10 C O ILE 138 C ILE 108 1_555 WA MG CHL . C CHL 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc11 C OD1 ASN 202 C ASN 172 1_555 DB MG CLA . C CLA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? # _chem_comp.formula 'C38 H75 O10 P' _chem_comp.formula_weight 722.97 _chem_comp.id LHG _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 LHG sing 716 n n O1 HO1 LHG sing 717 n n C1 C2 LHG sing 718 n n C1 HC11 LHG sing 719 n n C1 HC12 LHG sing 720 n n C2 O2 LHG sing 721 n n C2 C3 LHG sing 722 n n C2 HC2 LHG sing 723 n n O2 H02 LHG sing 724 n n C3 O3 LHG sing 725 n n C3 HC31 LHG sing 726 n n C3 HC32 LHG sing 727 n n O3 P LHG sing 728 n n P O4 LHG sing 729 n n P O5 LHG doub 730 n n P O6 LHG sing 731 n n O4 HO4 LHG sing 732 n n O6 C4 LHG sing 733 n n C4 C5 LHG sing 734 n n C4 HC41 LHG sing 735 n n C4 HC42 LHG sing 736 n n C5 C6 LHG sing 737 n n C5 O7 LHG sing 738 n n C5 HC5 LHG sing 739 n n C6 O8 LHG sing 740 n n C6 HC61 LHG sing 741 n n C6 HC62 LHG sing 742 n n O7 C7 LHG sing 743 n n C7 O9 LHG doub 744 n n C7 C8 LHG sing 745 n n C8 C9 LHG sing 746 n n C8 HC81 LHG sing 747 n n C8 HC82 LHG sing 748 n n C9 C10 LHG sing 749 n n C9 HC91 LHG sing 750 n n C9 HC92 LHG sing 751 n n C10 C11 LHG sing 752 n n C10 H101 LHG sing 753 n n C10 H102 LHG sing 754 n n O8 C23 LHG sing 755 n n C23 O10 LHG doub 756 n n C23 C24 LHG sing 757 n n C24 C25 LHG sing 758 n n C24 H241 LHG sing 759 n n C24 H242 LHG sing 760 n n C11 C12 LHG sing 761 n n C11 H111 LHG sing 762 n n C11 H112 LHG sing 763 n n C12 C13 LHG sing 764 n n C12 H121 LHG sing 765 n n C12 H122 LHG sing 766 n n C13 C14 LHG sing 767 n n C13 H131 LHG sing 768 n n C13 H132 LHG sing 769 n n C14 C15 LHG sing 770 n n C14 H141 LHG sing 771 n n C14 H142 LHG sing 772 n n C15 C16 LHG sing 773 n n C15 H151 LHG sing 774 n n C15 H152 LHG sing 775 n n C16 C17 LHG sing 776 n n C16 H161 LHG sing 777 n n C16 H162 LHG sing 778 n n C17 C18 LHG sing 779 n n C17 H171 LHG sing 780 n n C17 H172 LHG sing 781 n n C18 C19 LHG sing 782 n n C18 H181 LHG sing 783 n n C18 H182 LHG sing 784 n n C19 C20 LHG sing 785 n n C19 H191 LHG sing 786 n n C19 H192 LHG sing 787 n n C20 C21 LHG sing 788 n n C20 H201 LHG sing 789 n n C20 H202 LHG sing 790 n n C21 C22 LHG sing 791 n n C21 H211 LHG sing 792 n n C21 H212 LHG sing 793 n n C22 H221 LHG sing 794 n n C22 H222 LHG sing 795 n n C22 H223 LHG sing 796 n n C25 C26 LHG sing 797 n n C25 H251 LHG sing 798 n n C25 H252 LHG sing 799 n n C26 C27 LHG sing 800 n n C26 H261 LHG sing 801 n n C26 H262 LHG sing 802 n n C27 C28 LHG sing 803 n n C27 H271 LHG sing 804 n n C27 H272 LHG sing 805 n n C28 C29 LHG sing 806 n n C28 H281 LHG sing 807 n n C28 H282 LHG sing 808 n n C29 C30 LHG sing 809 n n C29 H291 LHG sing 810 n n C29 H292 LHG sing 811 n n C30 C31 LHG sing 812 n n C30 H301 LHG sing 813 n n C30 H302 LHG sing 814 n n C31 C32 LHG sing 815 n n C31 H311 LHG sing 816 n n C31 H312 LHG sing 817 n n C32 C33 LHG sing 818 n n C32 H321 LHG sing 819 n n C32 H322 LHG sing 820 n n C33 C34 LHG sing 821 n n C33 H331 LHG sing 822 n n C33 H332 LHG sing 823 n n C34 C35 LHG sing 824 n n C34 H341 LHG sing 825 n n C34 H342 LHG sing 826 n n C35 C36 LHG sing 827 n n C35 H351 LHG sing 828 n n C35 H352 LHG sing 829 n n C36 C37 LHG sing 830 n n C36 H361 LHG sing 831 n n C36 H362 LHG sing 832 n n C37 C38 LHG sing 833 n n C37 H371 LHG sing 834 n n C37 H372 LHG sing 835 n n C38 H381 LHG sing 836 n n C38 H382 LHG sing 837 n n C38 H383 LHG sing 838 n n # _atom_sites.entry_id 8HPD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0UR A 1 301 520 0UR 0UR . E 5 0IE A 1 302 521 0IE 0IE . F 6 NEX A 1 303 523 NEX NEX . G 7 CHL A 1 304 601 CHL CHL . H 7 CHL A 1 305 602 CHL CHL . I 8 CLA A 1 306 603 CLA CLA . J 8 CLA A 1 307 604 CLA CLA . K 7 CHL A 1 308 605 CHL CHL . L 7 CHL A 1 309 606 CHL CHL . M 7 CHL A 1 310 607 CHL CHL . N 7 CHL A 1 311 608 CHL CHL . O 7 CHL A 1 312 609 CHL CHL . P 8 CLA A 1 313 610 CLA CLA . Q 8 CLA A 1 314 611 CLA CLA . R 8 CLA A 1 315 612 CLA CLA . S 8 CLA A 1 316 613 CLA CLA . T 7 CHL A 1 317 614 CHL CHL . U 9 LHG A 1 318 630 LHG LHG . V 4 0UR B 1 301 520 0UR 0UR . W 5 0IE B 1 302 521 0IE 0IE . X 5 0IE B 1 303 522 0IE 0IE . Y 6 NEX B 1 304 523 NEX NEX . Z 7 CHL B 1 305 601 CHL CHL . AA 7 CHL B 1 306 602 CHL CHL . BA 8 CLA B 1 307 603 CLA CLA . CA 8 CLA B 1 308 604 CLA CLA . DA 7 CHL B 1 309 605 CHL CHL . EA 7 CHL B 1 310 606 CHL CHL . FA 7 CHL B 1 311 607 CHL CHL . GA 7 CHL B 1 312 608 CHL CHL . HA 7 CHL B 1 313 609 CHL CHL . IA 8 CLA B 1 314 610 CLA CLA . JA 8 CLA B 1 315 611 CLA CLA . KA 8 CLA B 1 316 612 CLA CLA . LA 8 CLA B 1 317 613 CLA CLA . MA 7 CHL B 1 318 614 CHL CHL . NA 9 LHG B 1 319 630 LHG LHG . OA 4 0UR C 1 301 520 0UR 0UR . PA 5 0IE C 1 302 521 0IE 0IE . QA 5 0IE C 1 303 522 0IE 0IE . RA 6 NEX C 1 304 523 NEX NEX . SA 7 CHL C 1 305 601 CHL CHL . TA 7 CHL C 1 306 602 CHL CHL . UA 8 CLA C 1 307 603 CLA CLA . VA 8 CLA C 1 308 604 CLA CLA . WA 7 CHL C 1 309 605 CHL CHL . XA 7 CHL C 1 310 606 CHL CHL . YA 7 CHL C 1 311 607 CHL CHL . ZA 7 CHL C 1 312 608 CHL CHL . AB 7 CHL C 1 313 609 CHL CHL . BB 8 CLA C 1 314 610 CLA CLA . CB 8 CLA C 1 315 611 CLA CLA . DB 8 CLA C 1 316 612 CLA CLA . EB 8 CLA C 1 317 613 CLA CLA . FB 7 CHL C 1 318 614 CHL CHL . GB 9 LHG C 1 319 630 LHG LHG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 LHG . . . NA 9 145.949 136.655 101.476 1 85.55 ? O1 LHG 319 B 1 HETATM 2 C C1 LHG . . . NA 9 145.845 135.262 101.755 1 85.55 ? C1 LHG 319 B 1 HETATM 3 C C2 LHG . . . NA 9 144.762 135.057 102.787 1 85.55 ? C2 LHG 319 B 1 HETATM 4 O O2 LHG . . . NA 9 144.284 136.295 103.269 1 85.55 ? O2 LHG 319 B 1 HETATM 5 C C3 LHG . . . NA 9 145.231 134.297 104 1 85.55 ? C3 LHG 319 B 1 HETATM 6 O O3 LHG . . . NA 9 143.986 134.05 104.614 1 85.55 ? O3 LHG 319 B 1 HETATM 7 P P LHG . . . NA 9 143.82 132.902 105.736 1 85.55 ? P LHG 319 B 1 HETATM 8 O O4 LHG . . . NA 9 143.888 131.589 105.04 1 85.55 ? O4 LHG 319 B 1 HETATM 9 O O5 LHG . . . NA 9 144.515 133.454 106.927 1 85.55 ? O5 LHG 319 B 1 HETATM 10 O O6 LHG . . . NA 9 142.184 133.12 105.933 1 85.55 ? O6 LHG 319 B 1 HETATM 11 C C4 LHG . . . NA 9 141.706 134.166 106.72 1 85.55 ? C4 LHG 319 B 1 HETATM 12 C C5 LHG . . . NA 9 140.763 133.478 107.708 1 85.55 ? C5 LHG 319 B 1 HETATM 13 C C6 LHG . . . NA 9 141.367 132.201 108.268 1 85.55 ? C6 LHG 319 B 1 HETATM 14 O O7 LHG . . . NA 9 140.591 134.377 108.777 1 85.55 ? O7 LHG 319 B 1 HETATM 15 C C7 LHG . . . NA 9 139.453 135.104 108.685 1 85.55 ? C7 LHG 319 B 1 HETATM 16 O O9 LHG . . . NA 9 138.596 134.894 107.848 1 85.55 ? O9 LHG 319 B 1 HETATM 17 C C8 LHG . . . NA 9 139.411 136.15 109.727 1 85.55 ? C8 LHG 319 B 1 HETATM 18 C C9 LHG . . . NA 9 137.984 136.372 110.148 1 85.55 ? C9 LHG 319 B 1 HETATM 19 C C10 LHG . . . NA 9 137.912 137.527 111.113 1 85.55 ? C10 LHG 319 B 1 HETATM 20 O O8 LHG . . . NA 9 140.525 131.878 109.378 1 85.55 ? O8 LHG 319 B 1 HETATM 21 C C23 LHG . . . NA 9 140.656 130.634 109.916 1 85.55 ? C23 LHG 319 B 1 HETATM 22 O O10 LHG . . . NA 9 141.598 129.937 109.596 1 85.55 ? O10 LHG 319 B 1 HETATM 23 C C24 LHG . . . NA 9 139.764 130.202 111.063 1 85.55 ? C24 LHG 319 B 1 HETATM 24 C C11 LHG . . . NA 9 136.428 137.734 111.236 1 85.55 ? C11 LHG 319 B 1 HETATM 25 C C12 LHG . . . NA 9 136.098 138.041 112.659 1 85.55 ? C12 LHG 319 B 1 HETATM 26 C C13 LHG . . . NA 9 134.593 138.049 112.798 1 85.55 ? C13 LHG 319 B 1 HETATM 27 C C14 LHG . . . NA 9 134.162 137.73 114.206 1 85.55 ? C14 LHG 319 B 1 HETATM 28 C C15 LHG . . . NA 9 134.466 138.966 115.022 1 85.55 ? C15 LHG 319 B 1 HETATM 29 C C16 LHG . . . NA 9 133.775 138.849 116.352 1 85.55 ? C16 LHG 319 B 1 HETATM 30 C C17 LHG . . . NA 9 132.267 138.874 116.161 1 85.55 ? C17 LHG 319 B 1 HETATM 31 C C18 LHG . . . NA 9 131.755 139.314 117.508 1 85.55 ? C18 LHG 319 B 1 HETATM 32 C C19 LHG . . . NA 9 130.248 139.36 117.608 1 85.55 ? C19 LHG 319 B 1 HETATM 33 C C20 LHG . . . NA 9 130.035 140.013 118.956 1 85.55 ? C20 LHG 319 B 1 HETATM 34 C C25 LHG . . . NA 9 139.863 131.04 112.32 1 85.55 ? C25 LHG 319 B 1 HETATM 35 C C26 LHG . . . NA 9 139.062 132.345 112.355 1 85.55 ? C26 LHG 319 B 1 HETATM 36 C C27 LHG . . . NA 9 137.785 132.018 111.617 1 85.55 ? C27 LHG 319 B 1 HETATM 37 C C28 LHG . . . NA 9 136.718 133.08 111.652 1 85.55 ? C28 LHG 319 B 1 HETATM 38 C C29 LHG . . . NA 9 136.136 133.121 110.249 1 85.55 ? C29 LHG 319 B 1 HETATM 39 C C30 LHG . . . NA 9 134.631 133.12 110.145 1 85.55 ? C30 LHG 319 B 1 HETATM 40 C C31 LHG . . . NA 9 134.058 133.82 108.934 1 85.55 ? C31 LHG 319 B 1 HETATM 41 C C32 LHG . . . NA 9 132.913 133.095 108.249 1 85.55 ? C32 LHG 319 B 1 HETATM 42 C C33 LHG . . . NA 9 132.175 134.12 107.414 1 85.55 ? C33 LHG 319 B 1 HETATM 43 C C34 LHG . . . NA 9 130.9 133.635 106.761 1 85.55 ? C34 LHG 319 B 1 HETATM 44 C C35 LHG . . . NA 9 131.035 133.612 105.253 1 85.55 ? C35 LHG 319 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #