data_8HPR # _model_server_result.job_id iWp56UbsIrcPk_uhhkuY0Q _model_server_result.datetime_utc '2024-11-28 13:33:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 8HPR # _exptl.entry_id 8HPR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HPR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 I N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n F GLC 1 H 1 GLC E 501 TRE 5 n F GLC 2 H 2 GLC E 501 TRE # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 F C1 GLC . H GLC 1 1_555 F O1 GLC . H GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? metalc ? metalc1 C OG SER 48 C SER 48 1_555 H MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc2 C OE1 GLN 87 C GLN 87 1_555 H MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc3 G O1G ATP . C ATP 501 1_555 H MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc4 G O3G ATP . C ATP 501 1_555 H MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc5 G O2B ATP . C ATP 501 1_555 H MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc6 D OG SER 48 D SER 48 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc7 D OE1 GLN 87 D GLN 87 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc8 I O1G ATP . D ATP 501 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc9 I O2B ATP . D ATP 501 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8HPR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 ATP C 1 501 1 ATP ATP . H 7 MG C 1 502 4 MG MG . I 6 ATP D 1 501 2 ATP ATP . J 7 MG D 1 502 13 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 6 147.971 155.768 115.971 1 110.55 ? PG ATP 501 C 1 HETATM 2 O O1G ATP . . . G 6 148.78 154.721 115.244 1 110.55 ? O1G ATP 501 C 1 HETATM 3 O O2G ATP . . . G 6 146.985 156.511 115.103 1 110.55 ? O2G ATP 501 C 1 HETATM 4 O O3G ATP . . . G 6 148.779 156.651 116.893 1 110.55 ? O3G ATP 501 C 1 HETATM 5 P PB ATP . . . G 6 146.84 153.331 116.749 1 110.55 ? PB ATP 501 C 1 HETATM 6 O O1B ATP . . . G 6 146.489 153.097 115.3 1 110.55 ? O1B ATP 501 C 1 HETATM 7 O O2B ATP . . . G 6 148.018 152.614 117.365 1 110.55 ? O2B ATP 501 C 1 HETATM 8 O O3B ATP . . . G 6 147.041 154.913 116.97 1 110.55 ? O3B ATP 501 C 1 HETATM 9 P PA ATP . . . G 6 145.575 151.891 118.79 1 110.55 ? PA ATP 501 C 1 HETATM 10 O O1A ATP . . . G 6 146.245 152.48 120.009 1 110.55 ? O1A ATP 501 C 1 HETATM 11 O O2A ATP . . . G 6 146.103 150.613 118.183 1 110.55 ? O2A ATP 501 C 1 HETATM 12 O O3A ATP . . . G 6 145.535 153.018 117.641 1 110.55 ? O3A ATP 501 C 1 HETATM 13 O O5' ATP . . . G 6 144.014 151.683 119.124 1 110.55 ? O5' ATP 501 C 1 HETATM 14 C C5' ATP . . . G 6 143.118 152.792 119.084 1 110.55 ? C5' ATP 501 C 1 HETATM 15 C C4' ATP . . . G 6 141.732 152.362 119.55 1 110.55 ? C4' ATP 501 C 1 HETATM 16 O O4' ATP . . . G 6 141.844 151.393 120.597 1 110.55 ? O4' ATP 501 C 1 HETATM 17 C C3' ATP . . . G 6 140.95 153.547 120.094 1 110.55 ? C3' ATP 501 C 1 HETATM 18 O O3' ATP . . . G 6 139.746 153.72 119.336 1 110.55 ? O3' ATP 501 C 1 HETATM 19 C C2' ATP . . . G 6 140.683 153.241 121.562 1 110.55 ? C2' ATP 501 C 1 HETATM 20 O O2' ATP . . . G 6 139.286 153.246 121.886 1 110.55 ? O2' ATP 501 C 1 HETATM 21 C C1' ATP . . . G 6 141.267 151.86 121.819 1 110.55 ? C1' ATP 501 C 1 HETATM 22 N N9 ATP . . . G 6 142.317 151.947 122.865 1 110.55 ? N9 ATP 501 C 1 HETATM 23 C C8 ATP . . . G 6 143.629 152.161 122.646 1 110.55 ? C8 ATP 501 C 1 HETATM 24 N N7 ATP . . . G 6 144.323 152.185 123.812 1 110.55 ? N7 ATP 501 C 1 HETATM 25 C C5 ATP . . . G 6 143.442 151.983 124.81 1 110.55 ? C5 ATP 501 C 1 HETATM 26 C C6 ATP . . . G 6 143.506 151.89 126.288 1 110.55 ? C6 ATP 501 C 1 HETATM 27 N N6 ATP . . . G 6 144.682 152.022 126.948 1 110.55 ? N6 ATP 501 C 1 HETATM 28 N N1 ATP . . . G 6 142.351 151.669 126.954 1 110.55 ? N1 ATP 501 C 1 HETATM 29 C C2 ATP . . . G 6 141.177 151.535 126.31 1 110.55 ? C2 ATP 501 C 1 HETATM 30 N N3 ATP . . . G 6 141.045 151.608 124.973 1 110.55 ? N3 ATP 501 C 1 HETATM 31 C C4 ATP . . . G 6 142.123 151.827 124.18 1 110.55 ? C4 ATP 501 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #