data_8HPZ # _model_server_result.job_id diqU8SdTBJEVGgIclz0-Bw _model_server_result.datetime_utc '2024-10-12 21:16:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hpz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 8HPZ # _exptl.entry_id 8HPZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HPZ _cell.length_a 60.28 _cell.length_b 107.29 _cell.length_c 117.92 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HPZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G 1 1,4 C,H 1 2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 60.28 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 60.28 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 72 n n C1 C2 EDO sing 73 n n C1 H11 EDO sing 74 n n C1 H12 EDO sing 75 n n O1 HO1 EDO sing 76 n n C2 O2 EDO sing 77 n n C2 H21 EDO sing 78 n n C2 H22 EDO sing 79 n n O2 HO2 EDO sing 80 n n # _atom_sites.entry_id 8HPZ _atom_sites.fract_transf_matrix[1][1] 0.016589 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CO2 B 1 201 1 CO2 CO2 . E 3 EDO B 1 202 2 EDO EDO . F 4 HOH A 1 201 27 HOH HOH . F 4 HOH A 2 202 25 HOH HOH . F 4 HOH A 3 203 20 HOH HOH . F 4 HOH A 4 204 60 HOH HOH . F 4 HOH A 5 205 28 HOH HOH . F 4 HOH A 6 206 24 HOH HOH . F 4 HOH A 7 207 23 HOH HOH . F 4 HOH A 8 208 2 HOH HOH . F 4 HOH A 9 209 7 HOH HOH . F 4 HOH A 10 210 22 HOH HOH . F 4 HOH A 11 211 59 HOH HOH . F 4 HOH A 12 212 76 HOH HOH . F 4 HOH A 13 213 77 HOH HOH . F 4 HOH A 14 214 62 HOH HOH . F 4 HOH A 15 215 29 HOH HOH . F 4 HOH A 16 216 61 HOH HOH . F 4 HOH A 17 217 19 HOH HOH . F 4 HOH A 18 218 26 HOH HOH . F 4 HOH A 19 219 78 HOH HOH . F 4 HOH A 20 220 81 HOH HOH . F 4 HOH A 21 221 30 HOH HOH . F 4 HOH A 22 222 58 HOH HOH . F 4 HOH A 23 223 63 HOH HOH . G 4 HOH B 1 301 79 HOH HOH . G 4 HOH B 2 302 9 HOH HOH . G 4 HOH B 3 303 13 HOH HOH . G 4 HOH B 4 304 42 HOH HOH . G 4 HOH B 5 305 17 HOH HOH . G 4 HOH B 6 306 11 HOH HOH . G 4 HOH B 7 307 8 HOH HOH . G 4 HOH B 8 308 6 HOH HOH . G 4 HOH B 9 309 1 HOH HOH . G 4 HOH B 10 310 37 HOH HOH . G 4 HOH B 11 311 4 HOH HOH . G 4 HOH B 12 312 14 HOH HOH . G 4 HOH B 13 313 41 HOH HOH . G 4 HOH B 14 314 55 HOH HOH . G 4 HOH B 15 315 68 HOH HOH . G 4 HOH B 16 316 56 HOH HOH . G 4 HOH B 17 317 52 HOH HOH . G 4 HOH B 18 318 67 HOH HOH . G 4 HOH B 19 319 64 HOH HOH . G 4 HOH B 20 320 34 HOH HOH . G 4 HOH B 21 321 54 HOH HOH . G 4 HOH B 22 322 71 HOH HOH . G 4 HOH B 23 323 38 HOH HOH . G 4 HOH B 24 324 53 HOH HOH . G 4 HOH B 25 325 66 HOH HOH . H 4 HOH C 1 201 12 HOH HOH . H 4 HOH C 2 202 39 HOH HOH . H 4 HOH C 3 203 49 HOH HOH . H 4 HOH C 4 204 5 HOH HOH . H 4 HOH C 5 205 32 HOH HOH . H 4 HOH C 6 206 51 HOH HOH . H 4 HOH C 7 207 69 HOH HOH . H 4 HOH C 8 208 16 HOH HOH . H 4 HOH C 9 209 36 HOH HOH . H 4 HOH C 10 210 72 HOH HOH . H 4 HOH C 11 211 35 HOH HOH . H 4 HOH C 12 212 33 HOH HOH . H 4 HOH C 13 213 3 HOH HOH . H 4 HOH C 14 214 10 HOH HOH . H 4 HOH C 15 215 48 HOH HOH . H 4 HOH C 16 216 74 HOH HOH . H 4 HOH C 17 217 44 HOH HOH . H 4 HOH C 18 218 15 HOH HOH . H 4 HOH C 19 219 65 HOH HOH . H 4 HOH C 20 220 73 HOH HOH . H 4 HOH C 21 221 57 HOH HOH . H 4 HOH C 22 222 50 HOH HOH . H 4 HOH C 23 223 43 HOH HOH . H 4 HOH C 24 224 18 HOH HOH . H 4 HOH C 25 225 80 HOH HOH . H 4 HOH C 26 226 45 HOH HOH . H 4 HOH C 27 227 21 HOH HOH . H 4 HOH C 28 228 46 HOH HOH . H 4 HOH C 29 229 47 HOH HOH . H 4 HOH C 30 230 40 HOH HOH . H 4 HOH C 31 231 75 HOH HOH . H 4 HOH C 32 232 31 HOH HOH . H 4 HOH C 33 233 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 15.068 -1.289 20.578 1 73.88 ? C1 EDO 202 B 1 HETATM 2 O O1 EDO . . . E 3 16.354 -1.345 21.138 1 74.58 ? O1 EDO 202 B 1 HETATM 3 C C2 EDO . . . E 3 14.648 0.106 20.338 1 71.03 ? C2 EDO 202 B 1 HETATM 4 O O2 EDO . . . E 3 13.259 0.286 20.516 1 75.56 ? O2 EDO 202 B 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #