data_8HQH # _model_server_result.job_id WH-k5vF148L03N06hQ4U0A _model_server_result.datetime_utc '2024-12-12 13:10:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8HQH # _exptl.entry_id 8HQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 575.679 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-methoxy-1H-indole-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.571 _cell.angle_gamma 90 _cell.entry_id 8HQH _cell.length_a 55.418 _cell.length_b 99.137 _cell.length_c 59.668 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C30 H33 N5 O5 S' _chem_comp.formula_weight 575.679 _chem_comp.id HUR _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-methoxy-1H-indole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C18 HUR sing 152 n n N4 C17 HUR sing 153 n n O5 C18 HUR doub 154 n n C18 C15 HUR sing 155 n n C17 C16 HUR sing 156 n n C16 C15 HUR sing 157 n n C15 C14 HUR sing 158 n n O4 C19 HUR doub 159 n n C14 C13 HUR sing 160 n n C19 C13 HUR sing 161 n n C19 C20 HUR sing 162 n n C13 N3 HUR sing 163 n n C20 N5 HUR doub 164 n y C20 S1 HUR sing 165 n y N5 C21 HUR sing 166 n y N3 C12 HUR sing 167 n n O3 C12 HUR doub 168 n n C12 C11 HUR sing 169 n n C21 C23 HUR doub 170 n y C21 C22 HUR sing 171 n y S1 C22 HUR sing 172 n y O2 C10 HUR doub 173 n n C23 C24 HUR sing 174 n y C22 C26 HUR doub 175 n y N1 C7 HUR sing 176 n y N1 C4 HUR sing 177 n y C10 C7 HUR sing 178 n n C10 N2 HUR sing 179 n n C11 N2 HUR sing 180 n n C11 C27 HUR sing 181 n n C24 C25 HUR doub 182 n y C7 C8 HUR doub 183 n y C3 C4 HUR doub 184 n y C3 C2 HUR sing 185 n y C26 C25 HUR sing 186 n y C4 C5 HUR sing 187 n y C27 C28 HUR sing 188 n n C2 C1 HUR doub 189 n y C8 C5 HUR sing 190 n y C5 C6 HUR doub 191 n y C30 C28 HUR sing 192 n n C28 C29 HUR sing 193 n n C1 C6 HUR sing 194 n y C6 O1 HUR sing 195 n n O1 C9 HUR sing 196 n n C1 H1 HUR sing 197 n n C11 H2 HUR sing 198 n n C13 H3 HUR sing 199 n n C14 H4 HUR sing 200 n n C14 H5 HUR sing 201 n n C15 H6 HUR sing 202 n n C16 H7 HUR sing 203 n n C16 H8 HUR sing 204 n n C17 H9 HUR sing 205 n n C17 H10 HUR sing 206 n n C2 H11 HUR sing 207 n n C23 H12 HUR sing 208 n n C24 H13 HUR sing 209 n n C25 H14 HUR sing 210 n n C26 H15 HUR sing 211 n n C27 H16 HUR sing 212 n n C27 H17 HUR sing 213 n n C28 H18 HUR sing 214 n n C29 H19 HUR sing 215 n n C29 H20 HUR sing 216 n n C29 H21 HUR sing 217 n n C3 H22 HUR sing 218 n n C30 H23 HUR sing 219 n n C30 H24 HUR sing 220 n n C30 H25 HUR sing 221 n n C8 H26 HUR sing 222 n n C9 H27 HUR sing 223 n n C9 H28 HUR sing 224 n n C9 H29 HUR sing 225 n n N1 H30 HUR sing 226 n n N2 H31 HUR sing 227 n n N3 H32 HUR sing 228 n n N4 H33 HUR sing 229 n n # _atom_sites.entry_id 8HQH _atom_sites.fract_transf_matrix[1][1] 0.018045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006063 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HUR A 1 401 2 HUR HUR . D 2 HUR B 1 401 1 HUR HUR . E 3 HOH A 1 501 51 HOH HOH . E 3 HOH A 2 502 107 HOH HOH . E 3 HOH A 3 503 86 HOH HOH . E 3 HOH A 4 504 78 HOH HOH . E 3 HOH A 5 505 72 HOH HOH . E 3 HOH A 6 506 52 HOH HOH . E 3 HOH A 7 507 109 HOH HOH . E 3 HOH A 8 508 76 HOH HOH . E 3 HOH A 9 509 8 HOH HOH . E 3 HOH A 10 510 93 HOH HOH . E 3 HOH A 11 511 83 HOH HOH . E 3 HOH A 12 512 63 HOH HOH . E 3 HOH A 13 513 70 HOH HOH . E 3 HOH A 14 514 14 HOH HOH . E 3 HOH A 15 515 25 HOH HOH . E 3 HOH A 16 516 11 HOH HOH . E 3 HOH A 17 517 15 HOH HOH . E 3 HOH A 18 518 57 HOH HOH . E 3 HOH A 19 519 34 HOH HOH . E 3 HOH A 20 520 87 HOH HOH . E 3 HOH A 21 521 74 HOH HOH . E 3 HOH A 22 522 36 HOH HOH . E 3 HOH A 23 523 59 HOH HOH . E 3 HOH A 24 524 75 HOH HOH . E 3 HOH A 25 525 13 HOH HOH . E 3 HOH A 26 526 60 HOH HOH . E 3 HOH A 27 527 29 HOH HOH . E 3 HOH A 28 528 69 HOH HOH . E 3 HOH A 29 529 121 HOH HOH . E 3 HOH A 30 530 5 HOH HOH . E 3 HOH A 31 531 16 HOH HOH . E 3 HOH A 32 532 111 HOH HOH . E 3 HOH A 33 533 62 HOH HOH . E 3 HOH A 34 534 49 HOH HOH . E 3 HOH A 35 535 73 HOH HOH . E 3 HOH A 36 536 22 HOH HOH . E 3 HOH A 37 537 21 HOH HOH . E 3 HOH A 38 538 97 HOH HOH . E 3 HOH A 39 539 2 HOH HOH . E 3 HOH A 40 540 53 HOH HOH . E 3 HOH A 41 541 79 HOH HOH . E 3 HOH A 42 542 26 HOH HOH . E 3 HOH A 43 543 1 HOH HOH . E 3 HOH A 44 544 102 HOH HOH . E 3 HOH A 45 545 54 HOH HOH . E 3 HOH A 46 546 39 HOH HOH . E 3 HOH A 47 547 17 HOH HOH . E 3 HOH A 48 548 113 HOH HOH . E 3 HOH A 49 549 112 HOH HOH . E 3 HOH A 50 550 114 HOH HOH . E 3 HOH A 51 551 108 HOH HOH . E 3 HOH A 52 552 105 HOH HOH . E 3 HOH A 53 553 88 HOH HOH . E 3 HOH A 54 554 95 HOH HOH . E 3 HOH A 55 555 35 HOH HOH . E 3 HOH A 56 556 50 HOH HOH . E 3 HOH A 57 557 104 HOH HOH . E 3 HOH A 58 558 46 HOH HOH . E 3 HOH A 59 559 33 HOH HOH . E 3 HOH A 60 560 100 HOH HOH . E 3 HOH A 61 561 122 HOH HOH . E 3 HOH A 62 562 10 HOH HOH . E 3 HOH A 63 563 19 HOH HOH . E 3 HOH A 64 564 31 HOH HOH . E 3 HOH A 65 565 37 HOH HOH . E 3 HOH A 66 566 65 HOH HOH . E 3 HOH A 67 567 80 HOH HOH . E 3 HOH A 68 568 91 HOH HOH . E 3 HOH A 69 569 89 HOH HOH . E 3 HOH A 70 570 124 HOH HOH . E 3 HOH A 71 571 92 HOH HOH . E 3 HOH A 72 572 81 HOH HOH . F 3 HOH B 1 501 56 HOH HOH . F 3 HOH B 2 502 47 HOH HOH . F 3 HOH B 3 503 24 HOH HOH . F 3 HOH B 4 504 43 HOH HOH . F 3 HOH B 5 505 68 HOH HOH . F 3 HOH B 6 506 94 HOH HOH . F 3 HOH B 7 507 106 HOH HOH . F 3 HOH B 8 508 27 HOH HOH . F 3 HOH B 9 509 7 HOH HOH . F 3 HOH B 10 510 48 HOH HOH . F 3 HOH B 11 511 118 HOH HOH . F 3 HOH B 12 512 110 HOH HOH . F 3 HOH B 13 513 41 HOH HOH . F 3 HOH B 14 514 9 HOH HOH . F 3 HOH B 15 515 4 HOH HOH . F 3 HOH B 16 516 55 HOH HOH . F 3 HOH B 17 517 85 HOH HOH . F 3 HOH B 18 518 18 HOH HOH . F 3 HOH B 19 519 61 HOH HOH . F 3 HOH B 20 520 82 HOH HOH . F 3 HOH B 21 521 115 HOH HOH . F 3 HOH B 22 522 67 HOH HOH . F 3 HOH B 23 523 6 HOH HOH . F 3 HOH B 24 524 23 HOH HOH . F 3 HOH B 25 525 101 HOH HOH . F 3 HOH B 26 526 71 HOH HOH . F 3 HOH B 27 527 32 HOH HOH . F 3 HOH B 28 528 30 HOH HOH . F 3 HOH B 29 529 28 HOH HOH . F 3 HOH B 30 530 3 HOH HOH . F 3 HOH B 31 531 12 HOH HOH . F 3 HOH B 32 532 96 HOH HOH . F 3 HOH B 33 533 120 HOH HOH . F 3 HOH B 34 534 84 HOH HOH . F 3 HOH B 35 535 38 HOH HOH . F 3 HOH B 36 536 64 HOH HOH . F 3 HOH B 37 537 99 HOH HOH . F 3 HOH B 38 538 20 HOH HOH . F 3 HOH B 39 539 44 HOH HOH . F 3 HOH B 40 540 66 HOH HOH . F 3 HOH B 41 541 123 HOH HOH . F 3 HOH B 42 542 42 HOH HOH . F 3 HOH B 43 543 116 HOH HOH . F 3 HOH B 44 544 45 HOH HOH . F 3 HOH B 45 545 98 HOH HOH . F 3 HOH B 46 546 58 HOH HOH . F 3 HOH B 47 547 40 HOH HOH . F 3 HOH B 48 548 117 HOH HOH . F 3 HOH B 49 549 90 HOH HOH . F 3 HOH B 50 550 77 HOH HOH . F 3 HOH B 51 551 103 HOH HOH . F 3 HOH B 52 552 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HUR . . . D 2 11.401 24.053 25.38 1 23.06 ? C1 HUR 401 B 1 HETATM 2 C C10 HUR . . . D 2 10.936 18.037 26.111 1 23.18 ? C10 HUR 401 B 1 HETATM 3 C C11 HUR . . . D 2 11.675 16.143 27.485 1 19.34 ? C11 HUR 401 B 1 HETATM 4 C C12 HUR . . . D 2 10.323 15.711 28.01 1 22.87 ? C12 HUR 401 B 1 HETATM 5 C C13 HUR . . . D 2 8.594 13.884 27.998 1 23.42 ? C13 HUR 401 B 1 HETATM 6 C C14 HUR . . . D 2 7.533 13.696 26.895 1 19.39 ? C14 HUR 401 B 1 HETATM 7 C C15 HUR . . . D 2 7.076 15.145 26.519 1 21.37 ? C15 HUR 401 B 1 HETATM 8 C C16 HUR . . . D 2 6.408 15.747 27.497 1 22.53 ? C16 HUR 401 B 1 HETATM 9 C C17 HUR . . . D 2 5.146 16.438 26.827 1 24.63 ? C17 HUR 401 B 1 HETATM 10 C C18 HUR . . . D 2 6.062 15.197 25.193 1 24.64 ? C18 HUR 401 B 1 HETATM 11 C C19 HUR . . . D 2 8.878 12.682 28.902 1 18.7 ? C19 HUR 401 B 1 HETATM 12 C C2 HUR . . . D 2 10.51 23.801 24.335 1 25.25 ? C2 HUR 401 B 1 HETATM 13 C C20 HUR . . . D 2 9.916 12.923 29.972 1 21.78 ? C20 HUR 401 B 1 HETATM 14 C C21 HUR . . . D 2 10.639 13.889 31.94 1 21.03 ? C21 HUR 401 B 1 HETATM 15 C C22 HUR . . . D 2 11.798 13.162 31.671 1 22.35 ? C22 HUR 401 B 1 HETATM 16 C C23 HUR . . . D 2 10.556 14.707 33.096 1 26.29 ? C23 HUR 401 B 1 HETATM 17 C C24 HUR . . . D 2 11.642 14.759 33.948 1 27.72 ? C24 HUR 401 B 1 HETATM 18 C C25 HUR . . . D 2 12.806 14.03 33.68 1 28.79 ? C25 HUR 401 B 1 HETATM 19 C C26 HUR . . . D 2 12.886 13.225 32.54 1 24.89 ? C26 HUR 401 B 1 HETATM 20 C C27 HUR . . . D 2 12.711 15.846 28.56 1 19.5 ? C27 HUR 401 B 1 HETATM 21 C C28 HUR . . . D 2 14.141 15.949 28.035 1 20.41 ? C28 HUR 401 B 1 HETATM 22 C C29 HUR . . . D 2 14.5 14.698 27.236 1 21.96 ? C29 HUR 401 B 1 HETATM 23 C C3 HUR . . . D 2 10.085 22.501 24.088 1 24.83 ? C3 HUR 401 B 1 HETATM 24 C C30 HUR . . . D 2 15.07 15.988 29.251 1 22.25 ? C30 HUR 401 B 1 HETATM 25 C C4 HUR . . . D 2 10.575 21.452 24.912 1 21.8 ? C4 HUR 401 B 1 HETATM 26 C C5 HUR . . . D 2 11.446 21.706 25.941 1 24.91 ? C5 HUR 401 B 1 HETATM 27 C C6 HUR . . . D 2 11.873 23.024 26.185 1 27.82 ? C6 HUR 401 B 1 HETATM 28 C C7 HUR . . . D 2 10.974 19.524 25.835 1 20.76 ? C7 HUR 401 B 1 HETATM 29 C C8 HUR . . . D 2 11.723 20.454 26.551 1 27.1 ? C8 HUR 401 B 1 HETATM 30 C C9 HUR . . . D 2 13.101 24.603 27.424 1 27.53 ? C9 HUR 401 B 1 HETATM 31 N N1 HUR . . . D 2 10.307 20.121 24.88 1 23.92 ? N1 HUR 401 B 1 HETATM 32 N N2 HUR . . . D 2 11.694 17.562 27.224 1 22.98 ? N2 HUR 401 B 1 HETATM 33 N N3 HUR . . . D 2 9.858 14.428 27.537 1 22.95 ? N3 HUR 401 B 1 HETATM 34 N N4 HUR . . . D 2 4.848 15.513 25.593 1 24.22 ? N4 HUR 401 B 1 HETATM 35 N N5 HUR . . . D 2 9.637 13.739 30.983 1 22.82 ? N5 HUR 401 B 1 HETATM 36 O O1 HUR . . . D 2 12.764 23.254 27.232 1 27.59 ? O1 HUR 401 B 1 HETATM 37 O O2 HUR . . . D 2 10.291 17.294 25.432 1 21.67 ? O2 HUR 401 B 1 HETATM 38 O O3 HUR . . . D 2 9.691 16.387 28.769 1 23.31 ? O3 HUR 401 B 1 HETATM 39 O O4 HUR . . . D 2 8.11 11.814 29.099 1 24.77 ? O4 HUR 401 B 1 HETATM 40 O O5 HUR . . . D 2 6.132 14.071 24.418 1 21.37 ? O5 HUR 401 B 1 HETATM 41 S S1 HUR . . . D 2 11.485 12.335 30.186 1 22.51 ? S1 HUR 401 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 41 #