data_8HQL # _model_server_result.job_id oVMsKlw6mLTvztHJVhqcog _model_server_result.datetime_utc '2025-09-11 14:48:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":705}' # _entry.id 8HQL # _exptl.entry_id 8HQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8HQL _cell.length_a 92.68 _cell.length_b 92.68 _cell.length_c 449.521 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 PISA decameric 10 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,G,H,I,J,K,L,M,N,O,RA 1 1 B,P,Q,R,S,T,U,V,SA 2 1 C,W,X,Y,Z,AA,BA,CA,DA,TA 3 1 D,EA,FA,GA,HA,IA,JA,KA,UA 4 1 E,LA,MA,NA,OA,PA,QA,VA 5 1 A,B,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,RA,SA 6 1,5 D,EA,FA,GA,HA,IA,JA,KA,UA 6 2,6 C,E,W,X,Y,Z,AA,BA,CA,DA,LA,MA,NA,OA,PA,QA,TA,VA 6 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -92.68 0 0 3 'crystal symmetry operation' 5_554 y,-x+y,z-1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 -74.920167 4 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -74.920167 6 'crystal symmetry operation' 10_564 -y,-x+1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -46.34 80.263234 -74.920167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 IA N N ? 3 NA N N ? 3 OA N N ? 3 PA N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 62 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 566 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 62 _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 566 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.025 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 173 n n C1 C2 GOL sing 174 n n C1 H11 GOL sing 175 n n C1 H12 GOL sing 176 n n O1 HO1 GOL sing 177 n n C2 O2 GOL sing 178 n n C2 C3 GOL sing 179 n n C2 H2 GOL sing 180 n n O2 HO2 GOL sing 181 n n C3 O3 GOL sing 182 n n C3 H31 GOL sing 183 n n C3 H32 GOL sing 184 n n O3 HO3 GOL sing 185 n n # _atom_sites.entry_id 8HQL _atom_sites.fract_transf_matrix[1][1] 0.01079 _atom_sites.fract_transf_matrix[1][2] 0.00623 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 1PE A 1 701 1 1PE 1PE . G 2 1PE A 1 702 5 1PE 1PE . H 2 1PE A 1 703 9 1PE 1PE . I 2 1PE A 1 704 16 1PE 1PE . J 3 GOL A 1 705 1 GOL GOL . K 3 GOL A 1 706 9 GOL GOL . L 3 GOL A 1 707 16 GOL GOL . M 3 GOL A 1 708 17 GOL GOL . N 3 GOL A 1 709 19 GOL GOL . O 4 CL A 1 710 4 CL CL . P 2 1PE B 1 701 2 1PE 1PE . Q 2 1PE B 1 702 8 1PE 1PE . R 2 1PE B 1 703 11 1PE 1PE . S 2 1PE B 1 704 14 1PE 1PE . T 2 1PE B 1 705 15 1PE 1PE . U 2 1PE B 1 706 17 1PE 1PE . V 4 CL B 1 707 2 CL CL . W 2 1PE C 1 701 13 1PE 1PE . X 3 GOL C 1 702 3 GOL GOL . Y 3 GOL C 1 703 4 GOL GOL . Z 3 GOL C 1 704 5 GOL GOL . AA 3 GOL C 1 705 11 GOL GOL . BA 3 GOL C 1 706 12 GOL GOL . CA 4 CL C 1 707 3 CL CL . DA 5 ACY C 1 708 2 ACY ACY . EA 2 1PE D 1 701 4 1PE 1PE . FA 2 1PE D 1 702 6 1PE 1PE . GA 2 1PE D 1 703 7 1PE 1PE . HA 2 1PE D 1 704 12 1PE 1PE . IA 3 GOL D 1 705 14 GOL GOL . JA 4 CL D 1 706 1 CL CL . KA 5 ACY D 1 707 1 ACY ACY . LA 2 1PE E 1 701 3 1PE 1PE . MA 2 1PE E 1 702 10 1PE 1PE . NA 3 GOL E 1 703 6 GOL GOL . OA 3 GOL E 1 704 7 GOL GOL . PA 3 GOL E 1 705 20 GOL GOL . QA 4 CL E 1 706 5 CL CL . RA 6 HOH A 1 801 151 HOH HOH . RA 6 HOH A 2 802 120 HOH HOH . RA 6 HOH A 3 803 24 HOH HOH . RA 6 HOH A 4 804 139 HOH HOH . RA 6 HOH A 5 805 42 HOH HOH . RA 6 HOH A 6 806 107 HOH HOH . RA 6 HOH A 7 807 170 HOH HOH . RA 6 HOH A 8 808 5 HOH HOH . RA 6 HOH A 9 809 57 HOH HOH . RA 6 HOH A 10 810 13 HOH HOH . RA 6 HOH A 11 811 7 HOH HOH . RA 6 HOH A 12 812 44 HOH HOH . RA 6 HOH A 13 813 17 HOH HOH . RA 6 HOH A 14 814 1 HOH HOH . RA 6 HOH A 15 815 59 HOH HOH . RA 6 HOH A 16 816 109 HOH HOH . RA 6 HOH A 17 817 84 HOH HOH . RA 6 HOH A 18 818 119 HOH HOH . RA 6 HOH A 19 819 178 HOH HOH . RA 6 HOH A 20 820 14 HOH HOH . RA 6 HOH A 21 821 174 HOH HOH . RA 6 HOH A 22 822 125 HOH HOH . RA 6 HOH A 23 823 138 HOH HOH . RA 6 HOH A 24 824 86 HOH HOH . RA 6 HOH A 25 825 106 HOH HOH . RA 6 HOH A 26 826 177 HOH HOH . RA 6 HOH A 27 827 69 HOH HOH . RA 6 HOH A 28 828 80 HOH HOH . RA 6 HOH A 29 829 46 HOH HOH . RA 6 HOH A 30 830 134 HOH HOH . RA 6 HOH A 31 831 19 HOH HOH . RA 6 HOH A 32 832 91 HOH HOH . RA 6 HOH A 33 833 58 HOH HOH . RA 6 HOH A 34 834 136 HOH HOH . RA 6 HOH A 35 835 163 HOH HOH . RA 6 HOH A 36 836 145 HOH HOH . RA 6 HOH A 37 837 100 HOH HOH . RA 6 HOH A 38 838 62 HOH HOH . RA 6 HOH A 39 839 99 HOH HOH . RA 6 HOH A 40 840 144 HOH HOH . RA 6 HOH A 41 841 173 HOH HOH . RA 6 HOH A 42 842 135 HOH HOH . RA 6 HOH A 43 843 180 HOH HOH . SA 6 HOH B 1 801 51 HOH HOH . SA 6 HOH B 2 802 126 HOH HOH . SA 6 HOH B 3 803 64 HOH HOH . SA 6 HOH B 4 804 137 HOH HOH . SA 6 HOH B 5 805 6 HOH HOH . SA 6 HOH B 6 806 8 HOH HOH . SA 6 HOH B 7 807 189 HOH HOH . SA 6 HOH B 8 808 47 HOH HOH . SA 6 HOH B 9 809 22 HOH HOH . SA 6 HOH B 10 810 149 HOH HOH . SA 6 HOH B 11 811 113 HOH HOH . SA 6 HOH B 12 812 2 HOH HOH . SA 6 HOH B 13 813 28 HOH HOH . SA 6 HOH B 14 814 93 HOH HOH . SA 6 HOH B 15 815 16 HOH HOH . SA 6 HOH B 16 816 141 HOH HOH . SA 6 HOH B 17 817 112 HOH HOH . SA 6 HOH B 18 818 179 HOH HOH . SA 6 HOH B 19 819 154 HOH HOH . SA 6 HOH B 20 820 50 HOH HOH . SA 6 HOH B 21 821 188 HOH HOH . SA 6 HOH B 22 822 150 HOH HOH . SA 6 HOH B 23 823 25 HOH HOH . SA 6 HOH B 24 824 94 HOH HOH . SA 6 HOH B 25 825 101 HOH HOH . SA 6 HOH B 26 826 68 HOH HOH . SA 6 HOH B 27 827 171 HOH HOH . SA 6 HOH B 28 828 92 HOH HOH . SA 6 HOH B 29 829 186 HOH HOH . SA 6 HOH B 30 830 98 HOH HOH . TA 6 HOH C 1 801 66 HOH HOH . TA 6 HOH C 2 802 10 HOH HOH . TA 6 HOH C 3 803 77 HOH HOH . TA 6 HOH C 4 804 29 HOH HOH . TA 6 HOH C 5 805 30 HOH HOH . TA 6 HOH C 6 806 3 HOH HOH . TA 6 HOH C 7 807 52 HOH HOH . TA 6 HOH C 8 808 12 HOH HOH . TA 6 HOH C 9 809 132 HOH HOH . TA 6 HOH C 10 810 96 HOH HOH . TA 6 HOH C 11 811 127 HOH HOH . TA 6 HOH C 12 812 40 HOH HOH . TA 6 HOH C 13 813 114 HOH HOH . TA 6 HOH C 14 814 183 HOH HOH . TA 6 HOH C 15 815 108 HOH HOH . TA 6 HOH C 16 816 181 HOH HOH . TA 6 HOH C 17 817 85 HOH HOH . TA 6 HOH C 18 818 97 HOH HOH . TA 6 HOH C 19 819 160 HOH HOH . TA 6 HOH C 20 820 182 HOH HOH . TA 6 HOH C 21 821 169 HOH HOH . TA 6 HOH C 22 822 124 HOH HOH . TA 6 HOH C 23 823 123 HOH HOH . UA 6 HOH D 1 801 83 HOH HOH . UA 6 HOH D 2 802 105 HOH HOH . UA 6 HOH D 3 803 11 HOH HOH . UA 6 HOH D 4 804 4 HOH HOH . UA 6 HOH D 5 805 63 HOH HOH . UA 6 HOH D 6 806 33 HOH HOH . UA 6 HOH D 7 807 166 HOH HOH . UA 6 HOH D 8 808 115 HOH HOH . UA 6 HOH D 9 809 187 HOH HOH . UA 6 HOH D 10 810 131 HOH HOH . UA 6 HOH D 11 811 89 HOH HOH . UA 6 HOH D 12 812 146 HOH HOH . UA 6 HOH D 13 813 121 HOH HOH . UA 6 HOH D 14 814 129 HOH HOH . UA 6 HOH D 15 815 31 HOH HOH . UA 6 HOH D 16 816 116 HOH HOH . UA 6 HOH D 17 817 153 HOH HOH . UA 6 HOH D 18 818 162 HOH HOH . UA 6 HOH D 19 819 185 HOH HOH . UA 6 HOH D 20 820 130 HOH HOH . UA 6 HOH D 21 821 184 HOH HOH . VA 6 HOH E 1 801 23 HOH HOH . VA 6 HOH E 2 802 67 HOH HOH . VA 6 HOH E 3 803 56 HOH HOH . VA 6 HOH E 4 804 39 HOH HOH . VA 6 HOH E 5 805 15 HOH HOH . VA 6 HOH E 6 806 41 HOH HOH . VA 6 HOH E 7 807 118 HOH HOH . VA 6 HOH E 8 808 117 HOH HOH . VA 6 HOH E 9 809 21 HOH HOH . VA 6 HOH E 10 810 157 HOH HOH . VA 6 HOH E 11 811 175 HOH HOH . VA 6 HOH E 12 812 148 HOH HOH . VA 6 HOH E 13 813 156 HOH HOH . VA 6 HOH E 14 814 147 HOH HOH . VA 6 HOH E 15 815 152 HOH HOH . VA 6 HOH E 16 816 158 HOH HOH . VA 6 HOH E 17 817 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 3 6.135 -0.89 -6.22 1 72.14 ? C1 GOL 705 A 1 HETATM 2 O O1 GOL . . . J 3 5.424 0.283 -5.811 1 63.47 ? O1 GOL 705 A 1 HETATM 3 C C2 GOL . . . J 3 5.571 -1.511 -7.491 1 62.36 ? C2 GOL 705 A 1 HETATM 4 O O2 GOL . . . J 3 6.658 -1.812 -8.369 1 76.19 ? O2 GOL 705 A 1 HETATM 5 C C3 GOL . . . J 3 4.775 -2.781 -7.269 1 67.29 ? C3 GOL 705 A 1 HETATM 6 O O3 GOL . . . J 3 3.438 -2.506 -6.85 1 64.17 ? O3 GOL 705 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #