data_8HSL # _model_server_result.job_id u1GoXjdtNfRl08Lw2Ydrjg _model_server_result.datetime_utc '2024-12-26 15:55:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hsl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":1000}' # _entry.id 8HSL # _exptl.entry_id 8HSL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HSL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HSL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 N N N ? 8 Q N N ? 8 T N N ? 8 W N N ? 8 Z N N ? 8 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OD1 ASP 739 J ASP 739 1_555 M MG MG . J MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc2 D OD2 ASP 739 J ASP 739 1_555 M MG MG . J MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc3 D OD1 ASP 741 J ASP 741 1_555 M MG MG . J MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc4 D OD2 ASP 741 J ASP 741 1_555 M MG MG . J MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc5 D OD2 ASP 743 J ASP 743 1_555 M MG MG . J MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc6 D SG CYS 1112 J CYS 1112 1_555 L ZN ZN . J ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc7 D SG CYS 1194 J CYS 1194 1_555 L ZN ZN . J ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc8 D N CYS 1201 J CYS 1201 1_555 L ZN ZN . J ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc9 D SG CYS 1204 J CYS 1204 1_555 L ZN ZN . J ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc10 F OG1 THR 193 A THR 191 1_555 O MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? metalc ? metalc11 N O2B ADP . A ADP 1000 1_555 O MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc12 N O3B ADP . A ADP 1000 1_555 P BE BEF . A BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? metalc ? metalc13 G OG1 THR 193 B THR 191 1_555 R MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc14 G OE2 GLU 219 B GLU 217 1_555 R MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc15 Q O2B ADP . B ADP 1000 1_555 R MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc16 Q O3B ADP . B ADP 1000 1_555 S BE BEF . B BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc17 H OG1 THR 193 C THR 191 1_555 U MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc18 T O2B ADP . C ADP 1000 1_555 U MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc19 T O2A ADP . C ADP 1000 1_555 U MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc20 I OG1 THR 193 D THR 191 1_555 X MG MG . D MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc21 W O2B ADP . D ADP 1000 1_555 X MG MG . D MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc22 J OG1 THR 193 E THR 191 1_555 AA MG MG . E MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc23 Z O2B ADP . E ADP 1000 1_555 AA MG MG . E MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc24 K OG1 THR 193 F THR 191 1_555 DA MG MG . F MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc25 CA O2B ADP . F ADP 1000 1_555 DA MG MG . F MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc26 CA O3A ADP . F ADP 1000 1_555 DA MG MG . F MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8HSL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 6 ZN J 1 1601 6112 ZN ZN . M 7 MG J 1 1602 8001 MG MG . N 8 ADP A 1 1000 1000 ADP ADP . O 7 MG A 1 1001 1001 MG MG . P 9 BEF A 1 1002 1002 BEF BEF . Q 8 ADP B 1 1000 1000 ADP ADP . R 7 MG B 1 1001 1001 MG MG . S 9 BEF B 1 1002 1002 BEF BEF . T 8 ADP C 1 1000 1000 ADP ADP . U 7 MG C 1 1001 1001 MG MG . V 9 BEF C 1 1002 1002 BEF BEF . W 8 ADP D 1 1000 1000 ADP ADP . X 7 MG D 1 1001 1001 MG MG . Y 9 BEF D 1 1002 1002 BEF BEF . Z 8 ADP E 1 1000 1000 ADP ADP . AA 7 MG E 1 1001 1001 MG MG . BA 9 BEF E 1 1002 1002 BEF BEF . CA 8 ADP F 1 1000 1000 ADP ADP . DA 7 MG F 1 1001 1001 MG MG . EA 9 BEF F 1 1002 1002 BEF BEF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . T 8 123.662 206.949 170.618 1 88.16 ? PB ADP 1000 C 1 HETATM 2 O O1B ADP . . . T 8 124.911 207.039 169.783 1 75.82 ? O1B ADP 1000 C 1 HETATM 3 O O2B ADP . . . T 8 123.601 205.748 171.529 1 91.81 ? O2B ADP 1000 C 1 HETATM 4 O O3B ADP . . . T 8 122.402 207.235 169.841 1 71.55 ? O3B ADP 1000 C 1 HETATM 5 P PA ADP . . . T 8 122.499 208.48 172.602 1 67.27 ? PA ADP 1000 C 1 HETATM 6 O O1A ADP . . . T 8 121.228 208.19 171.846 1 62.43 ? O1A ADP 1000 C 1 HETATM 7 O O2A ADP . . . T 8 122.765 207.759 173.899 1 72.18 ? O2A ADP 1000 C 1 HETATM 8 O O3A ADP . . . T 8 123.746 208.195 171.628 1 77.31 ? O3A ADP 1000 C 1 HETATM 9 O O5' ADP . . . T 8 122.574 210.064 172.869 1 70.94 ? O5' ADP 1000 C 1 HETATM 10 C C5' ADP . . . T 8 121.909 210.602 174.007 1 72.44 ? C5' ADP 1000 C 1 HETATM 11 C C4' ADP . . . T 8 121.744 212.111 173.875 1 70.04 ? C4' ADP 1000 C 1 HETATM 12 O O4' ADP . . . T 8 120.765 212.411 172.876 1 78.19 ? O4' ADP 1000 C 1 HETATM 13 C C3' ADP . . . T 8 121.285 212.731 175.183 1 70.9 ? C3' ADP 1000 C 1 HETATM 14 O O3' ADP . . . T 8 122.222 213.728 175.608 1 59.12 ? O3' ADP 1000 C 1 HETATM 15 C C2' ADP . . . T 8 119.923 213.335 174.902 1 84.42 ? C2' ADP 1000 C 1 HETATM 16 O O2' ADP . . . T 8 119.903 214.722 175.256 1 67.82 ? O2' ADP 1000 C 1 HETATM 17 C C1' ADP . . . T 8 119.673 213.169 173.409 1 79.58 ? C1' ADP 1000 C 1 HETATM 18 N N9 ADP . . . T 8 118.42 212.42 173.132 1 84.3 ? N9 ADP 1000 C 1 HETATM 19 C C8 ADP . . . T 8 118.335 211.421 172.239 1 80.83 ? C8 ADP 1000 C 1 HETATM 20 N N7 ADP . . . T 8 117.076 210.918 172.183 1 84.37 ? N7 ADP 1000 C 1 HETATM 21 C C5 ADP . . . T 8 116.325 211.612 173.055 1 79.28 ? C5 ADP 1000 C 1 HETATM 22 C C6 ADP . . . T 8 114.909 211.596 173.488 1 72.75 ? C6 ADP 1000 C 1 HETATM 23 N N6 ADP . . . T 8 114.024 210.715 172.965 1 73.31 ? N6 ADP 1000 C 1 HETATM 24 N N1 ADP . . . T 8 114.53 212.492 174.425 1 72.95 ? N1 ADP 1000 C 1 HETATM 25 C C2 ADP . . . T 8 115.392 213.378 174.959 1 64.41 ? C2 ADP 1000 C 1 HETATM 26 N N3 ADP . . . T 8 116.69 213.442 174.606 1 63.49 ? N3 ADP 1000 C 1 HETATM 27 C C4 ADP . . . T 8 117.211 212.609 173.673 1 76.56 ? C4 ADP 1000 C 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #