data_8HTT # _model_server_result.job_id 4CAQYS2OC9c5LTjRMcOa4A _model_server_result.datetime_utc '2024-11-22 00:21:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8htt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 8HTT # _exptl.entry_id 8HTT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 196.155 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D-gluconic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HTT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HTT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 A 1 NAG B 486 NAG 2 n B NAG 2 A 2 NAG B 487 NAG 2 n C NAG 1 C 1 NAG B 602 NAG 2 n C NAG 2 C 2 NAG B 603 NAG 3 n D NAG 1 D 1 NAG B 604 NAG 3 n D NAG 2 D 2 NAG B 605 NAG 3 n D BMA 3 D 3 BMA B 606 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 B CYS 74 1_555 A SG CYS 128 B CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 89 B CYS 89 1_555 A SG CYS 431 B CYS 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 62 B ASN 62 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 79 B ASN 79 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 127 B ASN 127 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 B O4 NAG . A NAG 1 1_555 B C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C6 H12 O7' _chem_comp.formula_weight 196.155 _chem_comp.id GCO _chem_comp.mon_nstd_flag . _chem_comp.name 'D-gluconic acid' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'GLUCONIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GCO sing 107 n n C1 O1A GCO doub 108 n n C1 O1B GCO sing 109 n n C2 C3 GCO sing 110 n n C2 O2 GCO sing 111 n n C2 H2 GCO sing 112 n n C3 C4 GCO sing 113 n n C3 O3 GCO sing 114 n n C3 H3 GCO sing 115 n n C4 C5 GCO sing 116 n n C4 O4 GCO sing 117 n n C4 H4 GCO sing 118 n n C5 C6 GCO sing 119 n n C5 O5 GCO sing 120 n n C5 H5 GCO sing 121 n n C6 O6 GCO sing 122 n n C6 H61 GCO sing 123 n n C6 H62 GCO sing 124 n n O1B HO1B GCO sing 125 n n O2 HO2 GCO sing 126 n n O3 HO3 GCO sing 127 n n O4 HO4 GCO sing 128 n n O5 HO5 GCO sing 129 n n O6 HO6 GCO sing 130 n n # _atom_sites.entry_id 8HTT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id GCO _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 901 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id GCO _pdbx_nonpoly_scheme.auth_mon_id GCO _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GCO . . . E 4 134.165 140.969 134.062 1 152.75 ? C1 GCO 901 B 1 HETATM 2 C C2 GCO . . . E 4 134.143 140.257 132.712 1 152.75 ? C2 GCO 901 B 1 HETATM 3 C C3 GCO . . . E 4 133.538 141.18 131.661 1 152.75 ? C3 GCO 901 B 1 HETATM 4 C C4 GCO . . . E 4 133.394 140.422 130.345 1 152.75 ? C4 GCO 901 B 1 HETATM 5 C C5 GCO . . . E 4 132.994 141.4 129.233 1 152.75 ? C5 GCO 901 B 1 HETATM 6 C C6 GCO . . . E 4 132.121 140.91 128.071 1 152.75 ? C6 GCO 901 B 1 HETATM 7 O O1A GCO . . . E 4 134.955 141.93 134.254 1 152.75 ? O1A GCO 901 B 1 HETATM 8 O O1B GCO . . . E 4 133.393 140.597 134.984 1 152.75 ? O1B GCO 901 B 1 HETATM 9 O O2 GCO . . . E 4 135.449 139.922 132.337 1 152.75 ? O2 GCO 901 B 1 HETATM 10 O O3 GCO . . . E 4 134.378 142.283 131.472 1 152.75 ? O3 GCO 901 B 1 HETATM 11 O O4 GCO . . . E 4 134.616 139.821 130.024 1 152.75 ? O4 GCO 901 B 1 HETATM 12 O O5 GCO . . . E 4 133.172 142.782 129.432 1 152.75 ? O5 GCO 901 B 1 HETATM 13 O O6 GCO . . . E 4 132.938 140.4 127.054 1 152.75 ? O6 GCO 901 B 1 HETATM 14 H H2 GCO . . . E 4 133.546 139.356 132.789 1 152.75 ? H2 GCO 901 B 1 HETATM 15 H H3 GCO . . . E 4 132.564 141.518 131.994 1 152.75 ? H3 GCO 901 B 1 HETATM 16 H H4 GCO . . . E 4 132.632 139.66 130.448 1 152.75 ? H4 GCO 901 B 1 HETATM 17 H H5 GCO . . . E 4 132.065 141.519 129.777 1 152.75 ? H5 GCO 901 B 1 HETATM 18 H H61 GCO . . . E 4 131.537 141.738 127.684 1 152.75 ? H61 GCO 901 B 1 HETATM 19 H H62 GCO . . . E 4 131.453 140.13 128.423 1 152.75 ? H62 GCO 901 B 1 HETATM 20 H HO2 GCO . . . E 4 135.803 139.301 132.953 1 152.75 ? HO2 GCO 901 B 1 HETATM 21 H HO3 GCO . . . E 4 135.254 141.984 131.288 1 152.75 ? HO3 GCO 901 B 1 HETATM 22 H HO4 GCO . . . E 4 134.675 138.98 130.45 1 152.75 ? HO4 GCO 901 B 1 HETATM 23 H HO5 GCO . . . E 4 133.796 143.113 128.805 1 152.75 ? HO5 GCO 901 B 1 HETATM 24 H HO6 GCO . . . E 4 132.412 139.91 126.443 1 152.75 ? HO6 GCO 901 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #