data_8HU2 # _model_server_result.job_id 6jyKaAOCvZizXZtxEZ5U4g _model_server_result.datetime_utc '2024-10-11 21:49:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hu2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8HU2 # _exptl.entry_id 8HU2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.403 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-(9~{H}-fluoren-9-ylmethoxycarbonylamino)-3-(4-oxidanylidene-5~{H}-pyrimidin-2-yl)propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8HU2 _cell.length_a 71.098 _cell.length_b 71.098 _cell.length_c 73.072 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HU2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H19 N3 O5' _chem_comp.formula_weight 405.403 _chem_comp.id M8R _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-(9~{H}-fluoren-9-ylmethoxycarbonylamino)-3-(4-oxidanylidene-5~{H}-pyrimidin-2-yl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C04 M8R sing 218 n n C05 N06 M8R doub 219 n n C04 C02 M8R sing 220 n n N06 C07 M8R sing 221 n n C02 O03 M8R doub 222 n n C02 N01 M8R sing 223 n n C07 N01 M8R doub 224 n n C07 C08 M8R sing 225 n n C08 C09 M8R sing 226 n n O15 C14 M8R doub 227 n n C09 N13 M8R sing 228 n n C09 C10 M8R sing 229 n n C14 N13 M8R sing 230 n n C14 O16 M8R sing 231 n n C27 C28 M8R doub 232 n y C27 C24 M8R sing 233 n y O12 C10 M8R doub 234 n n C28 C29 M8R sing 235 n y C17 O16 M8R sing 236 n n C17 C18 M8R sing 237 n n C10 O11 M8R sing 238 n n C24 C18 M8R sing 239 n n C24 C25 M8R doub 240 n y C18 C19 M8R sing 241 n n C29 C30 M8R doub 242 n y C25 C30 M8R sing 243 n y C25 C26 M8R sing 244 n n C19 C20 M8R sing 245 n y C19 C26 M8R doub 246 n y C20 C21 M8R doub 247 n y C26 C23 M8R sing 248 n y C21 C22 M8R sing 249 n y C23 C22 M8R doub 250 n y C17 H1 M8R sing 251 n n C17 H2 M8R sing 252 n n C20 H3 M8R sing 253 n n C21 H4 M8R sing 254 n n C22 H5 M8R sing 255 n n C28 H6 M8R sing 256 n n C04 H7 M8R sing 257 n n C04 H8 M8R sing 258 n n C05 H9 M8R sing 259 n n C08 H10 M8R sing 260 n n C08 H11 M8R sing 261 n n C09 H12 M8R sing 262 n n C18 H13 M8R sing 263 n n C23 H14 M8R sing 264 n n C27 H15 M8R sing 265 n n C29 H16 M8R sing 266 n n C30 H17 M8R sing 267 n n N13 H18 M8R sing 268 n n O11 H19 M8R sing 269 n n # _atom_sites.entry_id 8HU2 _atom_sites.fract_transf_matrix[1][1] 0.014065 _atom_sites.fract_transf_matrix[1][2] 0.00812 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 M8R A 1 301 301 M8R LIG . C 3 HOH A 1 401 169 HOH HOH . C 3 HOH A 2 402 134 HOH HOH . C 3 HOH A 3 403 91 HOH HOH . C 3 HOH A 4 404 25 HOH HOH . C 3 HOH A 5 405 98 HOH HOH . C 3 HOH A 6 406 95 HOH HOH . C 3 HOH A 7 407 129 HOH HOH . C 3 HOH A 8 408 69 HOH HOH . C 3 HOH A 9 409 167 HOH HOH . C 3 HOH A 10 410 56 HOH HOH . C 3 HOH A 11 411 119 HOH HOH . C 3 HOH A 12 412 7 HOH HOH . C 3 HOH A 13 413 30 HOH HOH . C 3 HOH A 14 414 15 HOH HOH . C 3 HOH A 15 415 92 HOH HOH . C 3 HOH A 16 416 31 HOH HOH . C 3 HOH A 17 417 19 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 86 HOH HOH . C 3 HOH A 20 420 88 HOH HOH . C 3 HOH A 21 421 43 HOH HOH . C 3 HOH A 22 422 101 HOH HOH . C 3 HOH A 23 423 65 HOH HOH . C 3 HOH A 24 424 133 HOH HOH . C 3 HOH A 25 425 89 HOH HOH . C 3 HOH A 26 426 113 HOH HOH . C 3 HOH A 27 427 155 HOH HOH . C 3 HOH A 28 428 139 HOH HOH . C 3 HOH A 29 429 66 HOH HOH . C 3 HOH A 30 430 2 HOH HOH . C 3 HOH A 31 431 84 HOH HOH . C 3 HOH A 32 432 122 HOH HOH . C 3 HOH A 33 433 70 HOH HOH . C 3 HOH A 34 434 17 HOH HOH . C 3 HOH A 35 435 24 HOH HOH . C 3 HOH A 36 436 67 HOH HOH . C 3 HOH A 37 437 87 HOH HOH . C 3 HOH A 38 438 74 HOH HOH . C 3 HOH A 39 439 34 HOH HOH . C 3 HOH A 40 440 149 HOH HOH . C 3 HOH A 41 441 109 HOH HOH . C 3 HOH A 42 442 16 HOH HOH . C 3 HOH A 43 443 90 HOH HOH . C 3 HOH A 44 444 61 HOH HOH . C 3 HOH A 45 445 36 HOH HOH . C 3 HOH A 46 446 42 HOH HOH . C 3 HOH A 47 447 33 HOH HOH . C 3 HOH A 48 448 82 HOH HOH . C 3 HOH A 49 449 45 HOH HOH . C 3 HOH A 50 450 157 HOH HOH . C 3 HOH A 51 451 6 HOH HOH . C 3 HOH A 52 452 117 HOH HOH . C 3 HOH A 53 453 140 HOH HOH . C 3 HOH A 54 454 159 HOH HOH . C 3 HOH A 55 455 1 HOH HOH . C 3 HOH A 56 456 27 HOH HOH . C 3 HOH A 57 457 8 HOH HOH . C 3 HOH A 58 458 161 HOH HOH . C 3 HOH A 59 459 47 HOH HOH . C 3 HOH A 60 460 80 HOH HOH . C 3 HOH A 61 461 102 HOH HOH . C 3 HOH A 62 462 57 HOH HOH . C 3 HOH A 63 463 51 HOH HOH . C 3 HOH A 64 464 50 HOH HOH . C 3 HOH A 65 465 59 HOH HOH . C 3 HOH A 66 466 68 HOH HOH . C 3 HOH A 67 467 23 HOH HOH . C 3 HOH A 68 468 9 HOH HOH . C 3 HOH A 69 469 64 HOH HOH . C 3 HOH A 70 470 124 HOH HOH . C 3 HOH A 71 471 175 HOH HOH . C 3 HOH A 72 472 103 HOH HOH . C 3 HOH A 73 473 63 HOH HOH . C 3 HOH A 74 474 158 HOH HOH . C 3 HOH A 75 475 60 HOH HOH . C 3 HOH A 76 476 152 HOH HOH . C 3 HOH A 77 477 55 HOH HOH . C 3 HOH A 78 478 118 HOH HOH . C 3 HOH A 79 479 172 HOH HOH . C 3 HOH A 80 480 14 HOH HOH . C 3 HOH A 81 481 20 HOH HOH . C 3 HOH A 82 482 81 HOH HOH . C 3 HOH A 83 483 46 HOH HOH . C 3 HOH A 84 484 22 HOH HOH . C 3 HOH A 85 485 105 HOH HOH . C 3 HOH A 86 486 162 HOH HOH . C 3 HOH A 87 487 145 HOH HOH . C 3 HOH A 88 488 128 HOH HOH . C 3 HOH A 89 489 4 HOH HOH . C 3 HOH A 90 490 29 HOH HOH . C 3 HOH A 91 491 3 HOH HOH . C 3 HOH A 92 492 37 HOH HOH . C 3 HOH A 93 493 26 HOH HOH . C 3 HOH A 94 494 44 HOH HOH . C 3 HOH A 95 495 163 HOH HOH . C 3 HOH A 96 496 100 HOH HOH . C 3 HOH A 97 497 53 HOH HOH . C 3 HOH A 98 498 40 HOH HOH . C 3 HOH A 99 499 12 HOH HOH . C 3 HOH A 100 500 11 HOH HOH . C 3 HOH A 101 501 28 HOH HOH . C 3 HOH A 102 502 76 HOH HOH . C 3 HOH A 103 503 178 HOH HOH . C 3 HOH A 104 504 121 HOH HOH . C 3 HOH A 105 505 147 HOH HOH . C 3 HOH A 106 506 32 HOH HOH . C 3 HOH A 107 507 97 HOH HOH . C 3 HOH A 108 508 54 HOH HOH . C 3 HOH A 109 509 143 HOH HOH . C 3 HOH A 110 510 116 HOH HOH . C 3 HOH A 111 511 48 HOH HOH . C 3 HOH A 112 512 99 HOH HOH . C 3 HOH A 113 513 176 HOH HOH . C 3 HOH A 114 514 141 HOH HOH . C 3 HOH A 115 515 137 HOH HOH . C 3 HOH A 116 516 75 HOH HOH . C 3 HOH A 117 517 154 HOH HOH . C 3 HOH A 118 518 38 HOH HOH . C 3 HOH A 119 519 39 HOH HOH . C 3 HOH A 120 520 131 HOH HOH . C 3 HOH A 121 521 94 HOH HOH . C 3 HOH A 122 522 78 HOH HOH . C 3 HOH A 123 523 171 HOH HOH . C 3 HOH A 124 524 10 HOH HOH . C 3 HOH A 125 525 108 HOH HOH . C 3 HOH A 126 526 58 HOH HOH . C 3 HOH A 127 527 49 HOH HOH . C 3 HOH A 128 528 166 HOH HOH . C 3 HOH A 129 529 72 HOH HOH . C 3 HOH A 130 530 71 HOH HOH . C 3 HOH A 131 531 168 HOH HOH . C 3 HOH A 132 532 115 HOH HOH . C 3 HOH A 133 533 52 HOH HOH . C 3 HOH A 134 534 120 HOH HOH . C 3 HOH A 135 535 112 HOH HOH . C 3 HOH A 136 536 107 HOH HOH . C 3 HOH A 137 537 83 HOH HOH . C 3 HOH A 138 538 110 HOH HOH . C 3 HOH A 139 539 77 HOH HOH . C 3 HOH A 140 540 146 HOH HOH . C 3 HOH A 141 541 144 HOH HOH . C 3 HOH A 142 542 132 HOH HOH . C 3 HOH A 143 543 13 HOH HOH . C 3 HOH A 144 544 111 HOH HOH . C 3 HOH A 145 545 164 HOH HOH . C 3 HOH A 146 546 148 HOH HOH . C 3 HOH A 147 547 62 HOH HOH . C 3 HOH A 148 548 160 HOH HOH . C 3 HOH A 149 549 104 HOH HOH . C 3 HOH A 150 550 5 HOH HOH . C 3 HOH A 151 551 153 HOH HOH . C 3 HOH A 152 552 114 HOH HOH . C 3 HOH A 153 553 73 HOH HOH . C 3 HOH A 154 554 85 HOH HOH . C 3 HOH A 155 555 156 HOH HOH . C 3 HOH A 156 556 125 HOH HOH . C 3 HOH A 157 557 174 HOH HOH . C 3 HOH A 158 558 136 HOH HOH . C 3 HOH A 159 559 126 HOH HOH . C 3 HOH A 160 560 130 HOH HOH . C 3 HOH A 161 561 142 HOH HOH . C 3 HOH A 162 562 135 HOH HOH . C 3 HOH A 163 563 173 HOH HOH . C 3 HOH A 164 564 151 HOH HOH . C 3 HOH A 165 565 170 HOH HOH . C 3 HOH A 166 566 177 HOH HOH . C 3 HOH A 167 567 41 HOH HOH . C 3 HOH A 168 568 79 HOH HOH . C 3 HOH A 169 569 127 HOH HOH . C 3 HOH A 170 570 35 HOH HOH . C 3 HOH A 171 571 93 HOH HOH . C 3 HOH A 172 572 106 HOH HOH . C 3 HOH A 173 573 96 HOH HOH . C 3 HOH A 174 574 123 HOH HOH . C 3 HOH A 175 575 165 HOH HOH . C 3 HOH A 176 576 150 HOH HOH . C 3 HOH A 177 577 21 HOH HOH . C 3 HOH A 178 578 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 M8R . . . B 2 -7.352 -33.976 8.577 1 21.73 ? C10 M8R 301 A 1 HETATM 2 C C17 M8R . . . B 2 -12.646 -32.476 8.443 1 31.76 ? C17 M8R 301 A 1 HETATM 3 C C20 M8R . . . B 2 -11.094 -33.628 11.144 1 28.43 ? C20 M8R 301 A 1 HETATM 4 C C21 M8R . . . B 2 -10.937 -33.779 12.521 1 29.74 ? C21 M8R 301 A 1 HETATM 5 C C22 M8R . . . B 2 -12.029 -34.201 13.318 1 26.84 ? C22 M8R 301 A 1 HETATM 6 C C24 M8R . . . B 2 -14.246 -34.237 9.119 1 29.27 ? C24 M8R 301 A 1 HETATM 7 C C26 M8R . . . B 2 -13.425 -34.319 11.333 1 28.87 ? C26 M8R 301 A 1 HETATM 8 C C28 M8R . . . B 2 -16.489 -34.776 8.389 1 33.07 ? C28 M8R 301 A 1 HETATM 9 C C02 M8R . . . B 2 -8.501 -29.226 5.384 1 22.74 ? C02 M8R 301 A 1 HETATM 10 C C04 M8R . . . B 2 -8.951 -29.63 4.127 1 21.04 ? C04 M8R 301 A 1 HETATM 11 C C05 M8R . . . B 2 -8.721 -30.949 3.763 1 23.4 ? C05 M8R 301 A 1 HETATM 12 C C07 M8R . . . B 2 -7.691 -31.345 5.781 1 21.56 ? C07 M8R 301 A 1 HETATM 13 C C08 M8R . . . B 2 -6.982 -32.319 6.718 1 19.88 ? C08 M8R 301 A 1 HETATM 14 C C09 M8R . . . B 2 -8.003 -33.19 7.452 1 24.72 ? C09 M8R 301 A 1 HETATM 15 C C14 M8R . . . B 2 -10.39 -32.578 7.776 1 27.86 ? C14 M8R 301 A 1 HETATM 16 C C18 M8R . . . B 2 -12.813 -33.842 9.12 1 27.78 ? C18 M8R 301 A 1 HETATM 17 C C19 M8R . . . B 2 -12.333 -33.894 10.537 1 27.52 ? C19 M8R 301 A 1 HETATM 18 C C23 M8R . . . B 2 -13.267 -34.465 12.723 1 25.95 ? C23 M8R 301 A 1 HETATM 19 C C25 M8R . . . B 2 -14.603 -34.526 10.44 1 29.78 ? C25 M8R 301 A 1 HETATM 20 C C27 M8R . . . B 2 -15.187 -34.366 8.095 1 32.85 ? C27 M8R 301 A 1 HETATM 21 C C29 M8R . . . B 2 -16.852 -35.059 9.718 1 28.19 ? C29 M8R 301 A 1 HETATM 22 C C30 M8R . . . B 2 -15.907 -34.941 10.734 1 31.08 ? C30 M8R 301 A 1 HETATM 23 N N01 M8R . . . B 2 -7.889 -30.098 6.17 1 20.4 ? N01 M8R 301 A 1 HETATM 24 N N06 M8R . . . B 2 -8.1 -31.769 4.589 1 22.45 ? N06 M8R 301 A 1 HETATM 25 N N13 M8R . . . B 2 -8.992 -32.319 8.034 1 24.92 ? N13 M8R 301 A 1 HETATM 26 O O03 M8R . . . B 2 -8.667 -28.106 5.75 1 22.03 ? O03 M8R 301 A 1 HETATM 27 O O11 M8R . . . B 2 -7.284 -33.473 9.728 1 27.11 -1 O11 M8R 301 A 1 HETATM 28 O O12 M8R . . . B 2 -6.904 -35.131 8.354 1 24.69 ? O12 M8R 301 A 1 HETATM 29 O O15 M8R . . . B 2 -10.712 -33.26 6.862 1 30.84 ? O15 M8R 301 A 1 HETATM 30 O O16 M8R . . . B 2 -11.338 -32.012 8.624 1 34.4 ? O16 M8R 301 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #