data_8HUH # _model_server_result.job_id yIh-MNrA841Pud4UxVIa8w _model_server_result.datetime_utc '2024-11-21 19:05:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8huh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":505}' # _entry.id 8HUH # _exptl.entry_id 8HUH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.456 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1-methylindol-4-yl)-4-(3,4,5-trimethoxyphenyl)-1~{H}-imidazo[4,5-c]pyridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HUH _cell.length_a 105.193 _cell.length_b 157.879 _cell.length_c 182.141 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HUH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc4 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc5 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc6 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc7 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc8 G O2B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc9 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc10 J O2A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc11 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc12 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc13 C O THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc14 C OG1 THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc15 C O GLY 44 C GLY 44 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc16 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? metalc ? metalc17 C OE2 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc18 O O3G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc19 O O2B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? # _chem_comp.formula 'C24 H22 N4 O3' _chem_comp.formula_weight 414.456 _chem_comp.id MXV _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1-methylindol-4-yl)-4-(3,4,5-trimethoxyphenyl)-1~{H}-imidazo[4,5-c]pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 MXV doub 406 n y C14 C15 MXV sing 407 n y C13 C12 MXV sing 408 n y C15 C10 MXV doub 409 n y C19 N16 MXV sing 410 n n C12 N16 MXV sing 411 n y C12 C11 MXV doub 412 n y N16 C17 MXV sing 413 n y C10 C11 MXV sing 414 n y C10 C08 MXV sing 415 n n C11 C18 MXV sing 416 n y N07 C08 MXV sing 417 n y N07 C05 MXV sing 418 n y C08 N09 MXV doub 419 n y C17 C18 MXV doub 420 n y C05 C06 MXV doub 421 n y C05 C04 MXV sing 422 n y N09 C04 MXV sing 423 n y C06 C01 MXV sing 424 n y C04 C03 MXV doub 425 n y C01 N02 MXV doub 426 n y C31 O30 MXV sing 427 n n C03 N02 MXV sing 428 n y C03 C20 MXV sing 429 n n C21 C20 MXV doub 430 n y C21 C22 MXV sing 431 n y C20 C25 MXV sing 432 n y O30 C22 MXV sing 433 n n C22 C23 MXV doub 434 n y C25 C24 MXV doub 435 n y C23 C24 MXV sing 436 n y C23 O28 MXV sing 437 n n C24 O26 MXV sing 438 n n O28 C29 MXV sing 439 n n O26 C27 MXV sing 440 n n C13 H1 MXV sing 441 n n C14 H2 MXV sing 442 n n C15 H3 MXV sing 443 n n C17 H4 MXV sing 444 n n C18 H5 MXV sing 445 n n C19 H6 MXV sing 446 n n C19 H7 MXV sing 447 n n C19 H8 MXV sing 448 n n C21 H9 MXV sing 449 n n C25 H10 MXV sing 450 n n C27 H11 MXV sing 451 n n C27 H12 MXV sing 452 n n C27 H13 MXV sing 453 n n C29 H14 MXV sing 454 n n C29 H15 MXV sing 455 n n C29 H16 MXV sing 456 n n C31 H17 MXV sing 457 n n C31 H18 MXV sing 458 n n C31 H19 MXV sing 459 n n C01 H20 MXV sing 460 n n C06 H21 MXV sing 461 n n N07 H22 MXV sing 462 n n # _atom_sites.entry_id 8HUH _atom_sites.fract_transf_matrix[1][1] 0.009506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 GDP B 1 501 501 GDP GDP . K 6 MG B 1 502 502 MG MG . L 9 MES B 1 503 503 MES MES . M 9 MES B 1 504 504 MES MES . N 10 MXV B 1 505 1 MXV AB1 . O 5 GTP C 1 501 501 GTP GTP . P 6 MG C 1 502 502 MG MG . Q 7 CA C 1 503 503 CA CA . R 8 GDP D 1 501 501 GDP GDP . S 11 ACP F 1 401 401 ACP ACP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 MXV . . . N 10 17.628 -66.635 -45.77 1 53.03 ? C10 MXV 505 B 1 HETATM 2 C C11 MXV . . . N 10 17.185 -65.318 -45.446 1 48.32 ? C11 MXV 505 B 1 HETATM 3 C C12 MXV . . . N 10 16.836 -64.478 -46.465 1 47.23 ? C12 MXV 505 B 1 HETATM 4 C C13 MXV . . . N 10 16.904 -64.951 -47.812 1 43.88 ? C13 MXV 505 B 1 HETATM 5 C C14 MXV . . . N 10 17.366 -66.221 -48.136 1 46.18 ? C14 MXV 505 B 1 HETATM 6 C C15 MXV . . . N 10 17.72 -67.079 -47.096 1 52.49 ? C15 MXV 505 B 1 HETATM 7 C C17 MXV . . . N 10 16.498 -63.305 -44.605 1 41.62 ? C17 MXV 505 B 1 HETATM 8 C C18 MXV . . . N 10 16.97 -64.567 -44.245 1 54.71 ? C18 MXV 505 B 1 HETATM 9 C C19 MXV . . . N 10 15.995 -62.144 -46.735 1 44.06 ? C19 MXV 505 B 1 HETATM 10 C C20 MXV . . . N 10 17.339 -68.353 -40.467 1 55.13 ? C20 MXV 505 B 1 HETATM 11 C C21 MXV . . . N 10 16.047 -67.95 -40.802 1 55.86 ? C21 MXV 505 B 1 HETATM 12 C C22 MXV . . . N 10 15.169 -67.42 -39.837 1 53.3 ? C22 MXV 505 B 1 HETATM 13 C C23 MXV . . . N 10 15.601 -67.327 -38.528 1 53.42 ? C23 MXV 505 B 1 HETATM 14 C C24 MXV . . . N 10 16.877 -67.74 -38.184 1 48.14 ? C24 MXV 505 B 1 HETATM 15 C C25 MXV . . . N 10 17.761 -68.221 -39.143 1 50.37 ? C25 MXV 505 B 1 HETATM 16 C C27 MXV . . . N 10 18.622 -67.653 -36.638 1 51.11 ? C27 MXV 505 B 1 HETATM 17 C C29 MXV . . . N 10 14.85 -65.457 -37.296 1 50.64 ? C29 MXV 505 B 1 HETATM 18 C C31 MXV . . . N 10 13.622 -67.115 -41.546 1 51.7 ? C31 MXV 505 B 1 HETATM 19 C C01 MXV . . . N 10 19.762 -70.512 -41.93 1 57.64 ? C01 MXV 505 B 1 HETATM 20 C C03 MXV . . . N 10 18.183 -68.887 -41.44 1 55.85 ? C03 MXV 505 B 1 HETATM 21 C C04 MXV . . . N 10 18.232 -68.434 -42.798 1 53.08 ? C04 MXV 505 B 1 HETATM 22 C C05 MXV . . . N 10 19.063 -69.065 -43.711 1 45.97 ? C05 MXV 505 B 1 HETATM 23 C C06 MXV . . . N 10 19.863 -70.131 -43.26 1 48.09 ? C06 MXV 505 B 1 HETATM 24 C C08 MXV . . . N 10 18.013 -67.493 -44.755 1 57.07 ? C08 MXV 505 B 1 HETATM 25 N N02 MXV . . . N 10 18.959 -69.899 -41.053 1 61.41 ? N02 MXV 505 B 1 HETATM 26 N N07 MXV . . . N 10 18.917 -68.459 -44.921 1 51.54 ? N07 MXV 505 B 1 HETATM 27 N N09 MXV . . . N 10 17.602 -67.451 -43.478 1 55.17 ? N09 MXV 505 B 1 HETATM 28 N N16 MXV . . . N 10 16.431 -63.281 -45.935 1 50.03 ? N16 MXV 505 B 1 HETATM 29 O O26 MXV . . . N 10 17.257 -67.607 -36.856 1 52.84 ? O26 MXV 505 B 1 HETATM 30 O O28 MXV . . . N 10 14.727 -66.815 -37.569 1 57.86 ? O28 MXV 505 B 1 HETATM 31 O O30 MXV . . . N 10 13.865 -66.99 -40.166 1 51.33 ? O30 MXV 505 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #