data_8HV1
#
_model_server_result.job_id            AhoHYCiFuCwmsx9LV_NOAQ 
_model_server_result.datetime_utc      '2025-09-17 21:40:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hv1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1103}' 
#
_entry.id    8HV1 
#
_exptl.entry_id    8HV1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HV1 
_cell.length_a            144.91 
_cell.length_b            144.91 
_cell.length_c            144.91 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HV1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 82 A CYS 775 1_555 C S1 N6N . A N6N 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? 
metalc ? metalc1 A OG SER 206 A SER 899 1_555 D NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? 
metalc ? metalc2 D NA NA . A NA 1103 1_555 E O HOH . A HOH 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc3 D NA NA . A NA 1103 1_555 E O HOH . A HOH 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? 
metalc ? metalc4 D NA NA . A NA 1103 1_555 E O HOH . A HOH 1241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc5 D NA NA . A NA 1103 1_555 E O HOH . A HOH 1251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8HV1 
_atom_sites.fract_transf_matrix[1][1]    0.006901 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006901 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006901 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PE5 A 1 1101 2020 PE5 PE5 . 
C 3 N6N A 1 1102 2021 N6N UNL . 
D 4 NA A 1 1103 2022 NA NA . 
E 5 HOH A 1 1201 3048 HOH HOH . 
E 5 HOH A 2 1202 3062 HOH HOH . 
E 5 HOH A 3 1203 3021 HOH HOH . 
E 5 HOH A 4 1204 3046 HOH HOH . 
E 5 HOH A 5 1205 3054 HOH HOH . 
E 5 HOH A 6 1206 3017 HOH HOH . 
E 5 HOH A 7 1207 3010 HOH HOH . 
E 5 HOH A 8 1208 3012 HOH HOH . 
E 5 HOH A 9 1209 3011 HOH HOH . 
E 5 HOH A 10 1210 3005 HOH HOH . 
E 5 HOH A 11 1211 3059 HOH HOH . 
E 5 HOH A 12 1212 3006 HOH HOH . 
E 5 HOH A 13 1213 3032 HOH HOH . 
E 5 HOH A 14 1214 3002 HOH HOH . 
E 5 HOH A 15 1215 3015 HOH HOH . 
E 5 HOH A 16 1216 3007 HOH HOH . 
E 5 HOH A 17 1217 3013 HOH HOH . 
E 5 HOH A 18 1218 3052 HOH HOH . 
E 5 HOH A 19 1219 3009 HOH HOH . 
E 5 HOH A 20 1220 3040 HOH HOH . 
E 5 HOH A 21 1221 3055 HOH HOH . 
E 5 HOH A 22 1222 3057 HOH HOH . 
E 5 HOH A 23 1223 3042 HOH HOH . 
E 5 HOH A 24 1224 3004 HOH HOH . 
E 5 HOH A 25 1225 3014 HOH HOH . 
E 5 HOH A 26 1226 3025 HOH HOH . 
E 5 HOH A 27 1227 3001 HOH HOH . 
E 5 HOH A 28 1228 3028 HOH HOH . 
E 5 HOH A 29 1229 3020 HOH HOH . 
E 5 HOH A 30 1230 3008 HOH HOH . 
E 5 HOH A 31 1231 3051 HOH HOH . 
E 5 HOH A 32 1232 3039 HOH HOH . 
E 5 HOH A 33 1233 3003 HOH HOH . 
E 5 HOH A 34 1234 3060 HOH HOH . 
E 5 HOH A 35 1235 3030 HOH HOH . 
E 5 HOH A 36 1236 3023 HOH HOH . 
E 5 HOH A 37 1237 3033 HOH HOH . 
E 5 HOH A 38 1238 3034 HOH HOH . 
E 5 HOH A 39 1239 3027 HOH HOH . 
E 5 HOH A 40 1240 3019 HOH HOH . 
E 5 HOH A 41 1241 3035 HOH HOH . 
E 5 HOH A 42 1242 3022 HOH HOH . 
E 5 HOH A 43 1243 3018 HOH HOH . 
E 5 HOH A 44 1244 3061 HOH HOH . 
E 5 HOH A 45 1245 3045 HOH HOH . 
E 5 HOH A 46 1246 3016 HOH HOH . 
E 5 HOH A 47 1247 3072 HOH HOH . 
E 5 HOH A 48 1248 3044 HOH HOH . 
E 5 HOH A 49 1249 3043 HOH HOH . 
E 5 HOH A 50 1250 3049 HOH HOH . 
E 5 HOH A 51 1251 3024 HOH HOH . 
E 5 HOH A 52 1252 3070 HOH HOH . 
E 5 HOH A 53 1253 3069 HOH HOH . 
E 5 HOH A 54 1254 3067 HOH HOH . 
E 5 HOH A 55 1255 3029 HOH HOH . 
E 5 HOH A 56 1256 3041 HOH HOH . 
E 5 HOH A 57 1257 3047 HOH HOH . 
E 5 HOH A 58 1258 3053 HOH HOH . 
E 5 HOH A 59 1259 3071 HOH HOH . 
E 5 HOH A 60 1260 3066 HOH HOH . 
E 5 HOH A 61 1261 3065 HOH HOH . 
E 5 HOH A 62 1262 3058 HOH HOH . 
E 5 HOH A 63 1263 3068 HOH HOH . 
E 5 HOH A 64 1264 3036 HOH HOH . 
E 5 HOH A 65 1265 3064 HOH HOH . 
E 5 HOH A 66 1266 3056 HOH HOH . 
E 5 HOH A 67 1267 3050 HOH HOH . 
E 5 HOH A 68 1268 3031 HOH HOH . 
E 5 HOH A 69 1269 3037 HOH HOH . 
E 5 HOH A 70 1270 3038 HOH HOH . 
E 5 HOH A 71 1271 3026 HOH HOH . 
E 5 HOH A 72 1272 3063 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -17.801 
_atom_site.Cartn_y               -31.353 
_atom_site.Cartn_z               -55.597 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        77.22 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1103 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#