data_8HV5 # _model_server_result.job_id rQKDPb5YtF4gaa1P1hk-pw _model_server_result.datetime_utc '2025-10-01 07:51:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 8HV5 # _exptl.entry_id 8HV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.225 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(1-methylbenzimidazol-4-yl)prop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HV5 _cell.length_a 144.687 _cell.length_b 144.687 _cell.length_c 144.687 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H11 N3 O' _chem_comp.formula_weight 201.225 _chem_comp.id N7C _chem_comp.mon_nstd_flag ? _chem_comp.name ~{N}-(1-methylbenzimidazol-4-yl)prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C06 N05 N7C doub 237 n y C06 N02 N7C sing 238 n y N05 C04 N7C sing 239 n y C01 N02 N7C sing 240 n n N02 C03 N7C sing 241 n y C04 C03 N7C doub 242 n y C04 C07 N7C sing 243 n y C03 C15 N7C sing 244 n y N08 C07 N7C sing 245 n n N08 C09 N7C sing 246 n n C07 C13 N7C doub 247 n y C10 C09 N7C sing 248 n n C10 C11 N7C doub 249 n n C15 C14 N7C doub 250 n y C09 O12 N7C doub 251 n n C13 C14 N7C sing 252 n y C01 H1 N7C sing 253 n n C01 H2 N7C sing 254 n n C01 H3 N7C sing 255 n n C06 H4 N7C sing 256 n n N08 H5 N7C sing 257 n n C10 H6 N7C sing 258 n n C11 H8 N7C sing 259 n n C11 H9 N7C sing 260 n n C13 H11 N7C sing 261 n n C14 H12 N7C sing 262 n n C15 H13 N7C sing 263 n n # _atom_sites.entry_id 8HV5 _atom_sites.fract_transf_matrix[1][1] 0.006911 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PE5 A 1 1101 2020 PE5 PE5 ? C 3 N7C A 1 1102 2021 N7C UNL ? D 4 HOH A 1 1201 3082 HOH HOH ? D 4 HOH A 2 1202 3046 HOH HOH ? D 4 HOH A 3 1203 3067 HOH HOH ? D 4 HOH A 4 1204 3065 HOH HOH ? D 4 HOH A 5 1205 3063 HOH HOH ? D 4 HOH A 6 1206 3010 HOH HOH ? D 4 HOH A 7 1207 3047 HOH HOH ? D 4 HOH A 8 1208 3034 HOH HOH ? D 4 HOH A 9 1209 3016 HOH HOH ? D 4 HOH A 10 1210 3031 HOH HOH ? D 4 HOH A 11 1211 3095 HOH HOH ? D 4 HOH A 12 1212 3033 HOH HOH ? D 4 HOH A 13 1213 3064 HOH HOH ? D 4 HOH A 14 1214 3071 HOH HOH ? D 4 HOH A 15 1215 3027 HOH HOH ? D 4 HOH A 16 1216 3076 HOH HOH ? D 4 HOH A 17 1217 3029 HOH HOH ? D 4 HOH A 18 1218 3093 HOH HOH ? D 4 HOH A 19 1219 3048 HOH HOH ? D 4 HOH A 20 1220 3035 HOH HOH ? D 4 HOH A 21 1221 3084 HOH HOH ? D 4 HOH A 22 1222 3036 HOH HOH ? D 4 HOH A 23 1223 3022 HOH HOH ? D 4 HOH A 24 1224 3075 HOH HOH ? D 4 HOH A 25 1225 3051 HOH HOH ? D 4 HOH A 26 1226 3028 HOH HOH ? D 4 HOH A 27 1227 3021 HOH HOH ? D 4 HOH A 28 1228 3004 HOH HOH ? D 4 HOH A 29 1229 3026 HOH HOH ? D 4 HOH A 30 1230 3072 HOH HOH ? D 4 HOH A 31 1231 3045 HOH HOH ? D 4 HOH A 32 1232 3090 HOH HOH ? D 4 HOH A 33 1233 3005 HOH HOH ? D 4 HOH A 34 1234 3009 HOH HOH ? D 4 HOH A 35 1235 3038 HOH HOH ? D 4 HOH A 36 1236 3001 HOH HOH ? D 4 HOH A 37 1237 3102 HOH HOH ? D 4 HOH A 38 1238 3006 HOH HOH ? D 4 HOH A 39 1239 3089 HOH HOH ? D 4 HOH A 40 1240 3094 HOH HOH ? D 4 HOH A 41 1241 3020 HOH HOH ? D 4 HOH A 42 1242 3043 HOH HOH ? D 4 HOH A 43 1243 3107 HOH HOH ? D 4 HOH A 44 1244 3008 HOH HOH ? D 4 HOH A 45 1245 3079 HOH HOH ? D 4 HOH A 46 1246 3073 HOH HOH ? D 4 HOH A 47 1247 3049 HOH HOH ? D 4 HOH A 48 1248 3091 HOH HOH ? D 4 HOH A 49 1249 3012 HOH HOH ? D 4 HOH A 50 1250 3106 HOH HOH ? D 4 HOH A 51 1251 3052 HOH HOH ? D 4 HOH A 52 1252 3030 HOH HOH ? D 4 HOH A 53 1253 3088 HOH HOH ? D 4 HOH A 54 1254 3074 HOH HOH ? D 4 HOH A 55 1255 3097 HOH HOH ? D 4 HOH A 56 1256 3081 HOH HOH ? D 4 HOH A 57 1257 3080 HOH HOH ? D 4 HOH A 58 1258 3077 HOH HOH ? D 4 HOH A 59 1259 3098 HOH HOH ? D 4 HOH A 60 1260 3015 HOH HOH ? D 4 HOH A 61 1261 3059 HOH HOH ? D 4 HOH A 62 1262 3041 HOH HOH ? D 4 HOH A 63 1263 3055 HOH HOH ? D 4 HOH A 64 1264 3024 HOH HOH ? D 4 HOH A 65 1265 3058 HOH HOH ? D 4 HOH A 66 1266 3083 HOH HOH ? D 4 HOH A 67 1267 3039 HOH HOH ? D 4 HOH A 68 1268 3018 HOH HOH ? D 4 HOH A 69 1269 3057 HOH HOH ? D 4 HOH A 70 1270 3053 HOH HOH ? D 4 HOH A 71 1271 3103 HOH HOH ? D 4 HOH A 72 1272 3013 HOH HOH ? D 4 HOH A 73 1273 3050 HOH HOH ? D 4 HOH A 74 1274 3086 HOH HOH ? D 4 HOH A 75 1275 3025 HOH HOH ? D 4 HOH A 76 1276 3100 HOH HOH ? D 4 HOH A 77 1277 3066 HOH HOH ? D 4 HOH A 78 1278 3017 HOH HOH ? D 4 HOH A 79 1279 3040 HOH HOH ? D 4 HOH A 80 1280 3056 HOH HOH ? D 4 HOH A 81 1281 3108 HOH HOH ? D 4 HOH A 82 1282 3042 HOH HOH ? D 4 HOH A 83 1283 3014 HOH HOH ? D 4 HOH A 84 1284 3092 HOH HOH ? D 4 HOH A 85 1285 3062 HOH HOH ? D 4 HOH A 86 1286 3070 HOH HOH ? D 4 HOH A 87 1287 3096 HOH HOH ? D 4 HOH A 88 1288 3068 HOH HOH ? D 4 HOH A 89 1289 3060 HOH HOH ? D 4 HOH A 90 1290 3023 HOH HOH ? D 4 HOH A 91 1291 3085 HOH HOH ? D 4 HOH A 92 1292 3061 HOH HOH ? D 4 HOH A 93 1293 3078 HOH HOH ? D 4 HOH A 94 1294 3069 HOH HOH ? D 4 HOH A 95 1295 3002 HOH HOH ? D 4 HOH A 96 1296 3101 HOH HOH ? D 4 HOH A 97 1297 3007 HOH HOH ? D 4 HOH A 98 1298 3054 HOH HOH ? D 4 HOH A 99 1299 3099 HOH HOH ? D 4 HOH A 100 1300 3105 HOH HOH ? D 4 HOH A 101 1301 3037 HOH HOH ? D 4 HOH A 102 1302 3019 HOH HOH ? D 4 HOH A 103 1303 3003 HOH HOH ? D 4 HOH A 104 1304 3011 HOH HOH ? D 4 HOH A 105 1305 3044 HOH HOH ? D 4 HOH A 106 1306 3104 HOH HOH ? D 4 HOH A 107 1307 3032 HOH HOH ? D 4 HOH A 108 1308 3087 HOH HOH ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 N7C . . . C 3 1.102 -24.488 -53.458 1 70.49 ? C01 N7C 1102 A 1 HETATM 2 N N02 N7C . . . C 3 1.357 -22.98 -53.357 1 74.02 ? N02 N7C 1102 A 1 HETATM 3 C C03 N7C . . . C 3 0.787 -22.169 -52.426 1 84.55 ? C03 N7C 1102 A 1 HETATM 4 C C04 N7C . . . C 3 1.246 -20.846 -52.644 1 77.45 ? C04 N7C 1102 A 1 HETATM 5 N N05 N7C . . . C 3 2.129 -20.887 -53.7 1 57.88 ? N05 N7C 1102 A 1 HETATM 6 C C06 N7C . . . C 3 2.149 -22.185 -54.118 1 70.95 ? C06 N7C 1102 A 1 HETATM 7 C C07 N7C . . . C 3 0.764 -19.803 -51.829 1 74.77 ? C07 N7C 1102 A 1 HETATM 8 N N08 N7C . . . C 3 1.263 -18.485 -52.069 1 85.99 ? N08 N7C 1102 A 1 HETATM 9 C C09 N7C . . . C 3 1.108 -17.383 -51.236 1 86.75 ? C09 N7C 1102 A 1 HETATM 10 C C10 N7C . . . C 3 1.801 -16.11 -51.78 1 82.52 ? C10 N7C 1102 A 1 HETATM 11 C C11 N7C . . . C 3 1.691 -14.752 -51.066 1 85.49 ? C11 N7C 1102 A 1 HETATM 12 O O12 N7C . . . C 3 0.471 -17.329 -50.174 1 87.28 ? O12 N7C 1102 A 1 HETATM 13 C C13 N7C . . . C 3 -0.135 -20.111 -50.795 1 84.41 ? C13 N7C 1102 A 1 HETATM 14 C C14 N7C . . . C 3 -0.576 -21.422 -50.573 1 92.65 ? C14 N7C 1102 A 1 HETATM 15 C C15 N7C . . . C 3 -0.119 -22.463 -51.389 1 91.81 ? C15 N7C 1102 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 200 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #