data_8HV6 # _model_server_result.job_id 5qcqIeYrm3UkYKDel1P15A _model_server_result.datetime_utc '2024-11-22 23:05:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 8HV6 # _exptl.entry_id 8HV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HV6 _cell.length_a 143.818 _cell.length_b 143.818 _cell.length_c 143.818 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 82 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 775 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C11 _struct_conn.ptnr2_label_comp_id N86 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id N86 _struct_conn.ptnr2_auth_seq_id 1102 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.846 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H38 O9' _chem_comp.formula_weight 398.489 _chem_comp.id PE5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C50 PE5 sing 272 n n C48 H481 PE5 sing 273 n n C48 H482 PE5 sing 274 n n C48 H483 PE5 sing 275 n n C50 O1 PE5 sing 276 n n C50 H501 PE5 sing 277 n n C50 H502 PE5 sing 278 n n O1 C1 PE5 sing 279 n n C1 C2 PE5 sing 280 n n C1 H11 PE5 sing 281 n n C1 H12 PE5 sing 282 n n C2 O2 PE5 sing 283 n n C2 H21 PE5 sing 284 n n C2 H22 PE5 sing 285 n n O2 C3 PE5 sing 286 n n C3 C4 PE5 sing 287 n n C3 H31 PE5 sing 288 n n C3 H32 PE5 sing 289 n n C4 O3 PE5 sing 290 n n C4 H41 PE5 sing 291 n n C4 H42 PE5 sing 292 n n O3 C5 PE5 sing 293 n n C5 C6 PE5 sing 294 n n C5 H51 PE5 sing 295 n n C5 H52A PE5 sing 296 n n C6 O4 PE5 sing 297 n n C6 H61 PE5 sing 298 n n C6 H62 PE5 sing 299 n n O4 C7 PE5 sing 300 n n C7 C8 PE5 sing 301 n n C7 H71 PE5 sing 302 n n C7 H72 PE5 sing 303 n n C8 O5 PE5 sing 304 n n C8 H81 PE5 sing 305 n n C8 H82 PE5 sing 306 n n O5 C9 PE5 sing 307 n n C9 C10 PE5 sing 308 n n C9 H91 PE5 sing 309 n n C9 H92 PE5 sing 310 n n C10 O6 PE5 sing 311 n n C10 H101 PE5 sing 312 n n C10 H102 PE5 sing 313 n n O6 C11 PE5 sing 314 n n C11 C12 PE5 sing 315 n n C11 H111 PE5 sing 316 n n C11 H112 PE5 sing 317 n n C12 O7 PE5 sing 318 n n C12 H121 PE5 sing 319 n n C12 H122 PE5 sing 320 n n O7 C13 PE5 sing 321 n n C13 C14 PE5 sing 322 n n C13 H131 PE5 sing 323 n n C13 H132 PE5 sing 324 n n C14 O8 PE5 sing 325 n n C14 H141 PE5 sing 326 n n C14 H142 PE5 sing 327 n n O8 C15 PE5 sing 328 n n C15 C16 PE5 sing 329 n n C15 H151 PE5 sing 330 n n C15 H152 PE5 sing 331 n n C16 O52 PE5 sing 332 n n C16 H161 PE5 sing 333 n n C16 H162 PE5 sing 334 n n O52 H52 PE5 sing 335 n n # _atom_sites.entry_id 8HV6 _atom_sites.fract_transf_matrix[1][1] 0.006953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PE5 A 1 1101 2021 PE5 PE5 . C 3 N86 A 1 1102 2022 N86 UNL . D 4 DMS A 1 1103 2023 DMS DMS . E 5 HOH A 1 1201 3011 HOH HOH . E 5 HOH A 2 1202 3059 HOH HOH . E 5 HOH A 3 1203 3081 HOH HOH . E 5 HOH A 4 1204 3064 HOH HOH . E 5 HOH A 5 1205 3127 HOH HOH . E 5 HOH A 6 1206 3105 HOH HOH . E 5 HOH A 7 1207 3150 HOH HOH . E 5 HOH A 8 1208 3136 HOH HOH . E 5 HOH A 9 1209 3090 HOH HOH . E 5 HOH A 10 1210 3101 HOH HOH . E 5 HOH A 11 1211 3063 HOH HOH . E 5 HOH A 12 1212 3032 HOH HOH . E 5 HOH A 13 1213 3112 HOH HOH . E 5 HOH A 14 1214 3083 HOH HOH . E 5 HOH A 15 1215 3126 HOH HOH . E 5 HOH A 16 1216 3078 HOH HOH . E 5 HOH A 17 1217 3050 HOH HOH . E 5 HOH A 18 1218 3009 HOH HOH . E 5 HOH A 19 1219 3037 HOH HOH . E 5 HOH A 20 1220 3093 HOH HOH . E 5 HOH A 21 1221 3073 HOH HOH . E 5 HOH A 22 1222 3110 HOH HOH . E 5 HOH A 23 1223 3016 HOH HOH . E 5 HOH A 24 1224 3102 HOH HOH . E 5 HOH A 25 1225 3030 HOH HOH . E 5 HOH A 26 1226 3115 HOH HOH . E 5 HOH A 27 1227 3137 HOH HOH . E 5 HOH A 28 1228 3100 HOH HOH . E 5 HOH A 29 1229 3036 HOH HOH . E 5 HOH A 30 1230 3044 HOH HOH . E 5 HOH A 31 1231 3070 HOH HOH . E 5 HOH A 32 1232 3114 HOH HOH . E 5 HOH A 33 1233 3035 HOH HOH . E 5 HOH A 34 1234 3001 HOH HOH . E 5 HOH A 35 1235 3038 HOH HOH . E 5 HOH A 36 1236 3123 HOH HOH . E 5 HOH A 37 1237 3128 HOH HOH . E 5 HOH A 38 1238 3041 HOH HOH . E 5 HOH A 39 1239 3151 HOH HOH . E 5 HOH A 40 1240 3125 HOH HOH . E 5 HOH A 41 1241 3022 HOH HOH . E 5 HOH A 42 1242 3057 HOH HOH . E 5 HOH A 43 1243 3135 HOH HOH . E 5 HOH A 44 1244 3140 HOH HOH . E 5 HOH A 45 1245 3045 HOH HOH . E 5 HOH A 46 1246 3019 HOH HOH . E 5 HOH A 47 1247 3133 HOH HOH . E 5 HOH A 48 1248 3086 HOH HOH . E 5 HOH A 49 1249 3017 HOH HOH . E 5 HOH A 50 1250 3145 HOH HOH . E 5 HOH A 51 1251 3116 HOH HOH . E 5 HOH A 52 1252 3007 HOH HOH . E 5 HOH A 53 1253 3149 HOH HOH . E 5 HOH A 54 1254 3113 HOH HOH . E 5 HOH A 55 1255 3108 HOH HOH . E 5 HOH A 56 1256 3082 HOH HOH . E 5 HOH A 57 1257 3095 HOH HOH . E 5 HOH A 58 1258 3130 HOH HOH . E 5 HOH A 59 1259 3065 HOH HOH . E 5 HOH A 60 1260 3107 HOH HOH . E 5 HOH A 61 1261 3121 HOH HOH . E 5 HOH A 62 1262 3148 HOH HOH . E 5 HOH A 63 1263 3092 HOH HOH . E 5 HOH A 64 1264 3139 HOH HOH . E 5 HOH A 65 1265 3146 HOH HOH . E 5 HOH A 66 1266 3096 HOH HOH . E 5 HOH A 67 1267 3003 HOH HOH . E 5 HOH A 68 1268 3052 HOH HOH . E 5 HOH A 69 1269 3071 HOH HOH . E 5 HOH A 70 1270 3018 HOH HOH . E 5 HOH A 71 1271 3104 HOH HOH . E 5 HOH A 72 1272 3144 HOH HOH . E 5 HOH A 73 1273 3020 HOH HOH . E 5 HOH A 74 1274 3015 HOH HOH . E 5 HOH A 75 1275 3008 HOH HOH . E 5 HOH A 76 1276 3077 HOH HOH . E 5 HOH A 77 1277 3069 HOH HOH . E 5 HOH A 78 1278 3097 HOH HOH . E 5 HOH A 79 1279 3124 HOH HOH . E 5 HOH A 80 1280 3027 HOH HOH . E 5 HOH A 81 1281 3058 HOH HOH . E 5 HOH A 82 1282 3042 HOH HOH . E 5 HOH A 83 1283 3122 HOH HOH . E 5 HOH A 84 1284 3103 HOH HOH . E 5 HOH A 85 1285 3084 HOH HOH . E 5 HOH A 86 1286 3074 HOH HOH . E 5 HOH A 87 1287 3053 HOH HOH . E 5 HOH A 88 1288 3094 HOH HOH . E 5 HOH A 89 1289 3117 HOH HOH . E 5 HOH A 90 1290 3006 HOH HOH . E 5 HOH A 91 1291 3047 HOH HOH . E 5 HOH A 92 1292 3099 HOH HOH . E 5 HOH A 93 1293 3012 HOH HOH . E 5 HOH A 94 1294 3129 HOH HOH . E 5 HOH A 95 1295 3055 HOH HOH . E 5 HOH A 96 1296 3028 HOH HOH . E 5 HOH A 97 1297 3132 HOH HOH . E 5 HOH A 98 1298 3005 HOH HOH . E 5 HOH A 99 1299 3134 HOH HOH . E 5 HOH A 100 1300 3106 HOH HOH . E 5 HOH A 101 1301 3147 HOH HOH . E 5 HOH A 102 1302 3029 HOH HOH . E 5 HOH A 103 1303 3120 HOH HOH . E 5 HOH A 104 1304 3014 HOH HOH . E 5 HOH A 105 1305 3039 HOH HOH . E 5 HOH A 106 1306 3119 HOH HOH . E 5 HOH A 107 1307 3089 HOH HOH . E 5 HOH A 108 1308 3131 HOH HOH . E 5 HOH A 109 1309 3062 HOH HOH . E 5 HOH A 110 1310 3013 HOH HOH . E 5 HOH A 111 1311 3080 HOH HOH . E 5 HOH A 112 1312 3033 HOH HOH . E 5 HOH A 113 1313 3143 HOH HOH . E 5 HOH A 114 1314 3023 HOH HOH . E 5 HOH A 115 1315 3002 HOH HOH . E 5 HOH A 116 1316 3109 HOH HOH . E 5 HOH A 117 1317 3021 HOH HOH . E 5 HOH A 118 1318 3066 HOH HOH . E 5 HOH A 119 1319 3031 HOH HOH . E 5 HOH A 120 1320 3034 HOH HOH . E 5 HOH A 121 1321 3118 HOH HOH . E 5 HOH A 122 1322 3072 HOH HOH . E 5 HOH A 123 1323 3048 HOH HOH . E 5 HOH A 124 1324 3142 HOH HOH . E 5 HOH A 125 1325 3049 HOH HOH . E 5 HOH A 126 1326 3098 HOH HOH . E 5 HOH A 127 1327 3025 HOH HOH . E 5 HOH A 128 1328 3152 HOH HOH . E 5 HOH A 129 1329 3138 HOH HOH . E 5 HOH A 130 1330 3026 HOH HOH . E 5 HOH A 131 1331 3076 HOH HOH . E 5 HOH A 132 1332 3060 HOH HOH . E 5 HOH A 133 1333 3141 HOH HOH . E 5 HOH A 134 1334 3010 HOH HOH . E 5 HOH A 135 1335 3051 HOH HOH . E 5 HOH A 136 1336 3004 HOH HOH . E 5 HOH A 137 1337 3091 HOH HOH . E 5 HOH A 138 1338 3085 HOH HOH . E 5 HOH A 139 1339 3040 HOH HOH . E 5 HOH A 140 1340 3043 HOH HOH . E 5 HOH A 141 1341 3056 HOH HOH . E 5 HOH A 142 1342 3079 HOH HOH . E 5 HOH A 143 1343 3088 HOH HOH . E 5 HOH A 144 1344 3111 HOH HOH . E 5 HOH A 145 1345 3061 HOH HOH . E 5 HOH A 146 1346 3068 HOH HOH . E 5 HOH A 147 1347 3075 HOH HOH . E 5 HOH A 148 1348 3024 HOH HOH . E 5 HOH A 149 1349 3046 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C48 PE5 . . . B 2 -72.383 18.815 7.188 0.5 106.27 ? C48 PE5 1101 A 1 HETATM 2 C C50 PE5 . . . B 2 -72.266 17.371 6.931 0.5 109.63 ? C50 PE5 1101 A 1 HETATM 3 O O1 PE5 . . . B 2 -73.221 16.952 5.961 0.5 110.23 ? O1 PE5 1101 A 1 HETATM 4 C C1 PE5 . . . B 2 -72.677 16.07 4.98 0.5 105.81 ? C1 PE5 1101 A 1 HETATM 5 C C2 PE5 . . . B 2 -73.589 15.994 3.779 0.5 103.23 ? C2 PE5 1101 A 1 HETATM 6 O O2 PE5 . . . B 2 -73.369 17.122 2.932 0.5 94.01 ? O2 PE5 1101 A 1 HETATM 7 C C3 PE5 . . . B 2 -74.335 17.274 1.893 0.5 70.84 ? C3 PE5 1101 A 1 HETATM 8 C C4 PE5 . . . B 2 -74.776 18.715 1.819 0.5 59.85 ? C4 PE5 1101 A 1 HETATM 9 O O3 PE5 . . . B 2 -73.995 19.408 0.853 0.5 45.73 ? O3 PE5 1101 A 1 HETATM 10 C C5 PE5 . . . B 2 -74.154 20.823 0.883 0.5 41.35 ? C5 PE5 1101 A 1 HETATM 11 C C6 PE5 . . . B 2 -72.802 21.522 0.753 0.5 38.85 ? C6 PE5 1101 A 1 HETATM 12 O O4 PE5 . . . B 2 -71.899 20.72 -0.002 0.5 34.9 ? O4 PE5 1101 A 1 HETATM 13 C C7 PE5 . . . B 2 -71.016 21.472 -0.829 0.5 32.84 ? C7 PE5 1101 A 1 HETATM 14 C C8 PE5 . . . B 2 -69.627 20.827 -0.859 0.5 31.33 ? C8 PE5 1101 A 1 HETATM 15 O O5 PE5 . . . B 2 -69.727 19.41 -0.88 0.5 29.53 ? O5 PE5 1101 A 1 HETATM 16 C C9 PE5 . . . B 2 -69.021 18.793 -1.948 0.5 35.55 ? C9 PE5 1101 A 1 HETATM 17 C C10 PE5 . . . B 2 -69.465 17.359 -2.088 0.5 39.17 ? C10 PE5 1101 A 1 HETATM 18 O O6 PE5 . . . B 2 -70.386 17.248 -3.175 0.5 45.93 ? O6 PE5 1101 A 1 HETATM 19 C C11 PE5 . . . B 2 -70.24 16.037 -3.925 0.5 41.97 ? C11 PE5 1101 A 1 HETATM 20 C C12 PE5 . . . B 2 -70.892 16.157 -5.282 0.5 39.88 ? C12 PE5 1101 A 1 HETATM 21 O O7 PE5 . . . B 2 -70.417 17.294 -6.014 0.5 33.96 ? O7 PE5 1101 A 1 HETATM 22 C C13 PE5 . . . B 2 -71.45 17.848 -6.821 0.5 31.55 ? C13 PE5 1101 A 1 HETATM 23 C C14 PE5 . . . B 2 -71.115 19.22 -7.285 0.5 29.08 ? C14 PE5 1101 A 1 HETATM 24 O O8 PE5 . . . B 2 -71.63 20.183 -6.378 0.5 28.97 ? O8 PE5 1101 A 1 HETATM 25 C C15 PE5 . . . B 2 -70.66 20.634 -5.433 0.5 26.12 ? C15 PE5 1101 A 1 HETATM 26 C C16 PE5 . . . B 2 -70.727 19.812 -4.176 0.5 24.29 ? C16 PE5 1101 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 26 #