data_8HVN
#
_model_server_result.job_id            x-sbxDkRKxiNR6WgiIuj3A 
_model_server_result.datetime_utc      '2024-11-05 15:26:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hvn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    8HVN 
#
_exptl.entry_id    8HVN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              501.542 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HVN 
_cell.length_a            67.902 
_cell.length_b            101.384 
_cell.length_c            103.55 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HVN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C23 H34 F3 N5 O4' 
_chem_comp.formula_weight    501.542 
_chem_comp.id                4WI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PF-07321332, bound form;nirmatrelvir, bound form;Paxlovid, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C8 4WI doub 1 n n 
C8 N2 4WI sing 2 n n 
C8 C5 4WI sing 3 n n 
N2 C7 4WI sing 4 n n 
C4 C5 4WI sing 5 n n 
C4 C2 4WI sing 6 n n 
C5 C6 4WI sing 7 n n 
N5 C3 4WI doub 8 n n 
C3 C2 4WI sing 9 n n 
C7 C6 4WI sing 10 n n 
C2 N1 4WI sing 11 n n 
N1 C1 4WI sing 12 n n 
F1 C22 4WI sing 13 n n 
O3 C13 4WI doub 14 n n 
C1 C9 4WI sing 15 n n 
C1 O2 4WI doub 16 n n 
F3 C22 4WI sing 17 n n 
C23 C15 4WI sing 18 n n 
C22 F2 4WI sing 19 n n 
C22 C21 4WI sing 20 n n 
C9 N3 4WI sing 21 n n 
C9 C12 4WI sing 22 n n 
C13 N3 4WI sing 23 n n 
C13 C14 4WI sing 24 n n 
N4 C21 4WI sing 25 n n 
N4 C14 4WI sing 26 n n 
C19 C18 4WI sing 27 n n 
N3 C10 4WI sing 28 n n 
C21 O4 4WI doub 29 n n 
C12 C18 4WI sing 30 n n 
C12 C11 4WI sing 31 n n 
C14 C15 4WI sing 32 n n 
C15 C17 4WI sing 33 n n 
C15 C16 4WI sing 34 n n 
C18 C20 4WI sing 35 n n 
C18 C11 4WI sing 36 n n 
C10 C11 4WI sing 37 n n 
C3 H33 4WI sing 38 n n 
C6 H5 4WI sing 39 n n 
C6 H6 4WI sing 40 n n 
C7 H7 4WI sing 41 n n 
C7 H8 4WI sing 42 n n 
C10 H11 4WI sing 43 n n 
C10 H12 4WI sing 44 n n 
C5 H4 4WI sing 45 n n 
C9 H10 4WI sing 46 n n 
C11 H13 4WI sing 47 n n 
C12 H14 4WI sing 48 n n 
C19 H23 4WI sing 49 n n 
C19 H24 4WI sing 50 n n 
C19 H25 4WI sing 51 n n 
C20 H26 4WI sing 52 n n 
C20 H27 4WI sing 53 n n 
C20 H28 4WI sing 54 n n 
C16 H17 4WI sing 55 n n 
C16 H19 4WI sing 56 n n 
C16 H18 4WI sing 57 n n 
C17 H20 4WI sing 58 n n 
C17 H21 4WI sing 59 n n 
C17 H22 4WI sing 60 n n 
C23 H29 4WI sing 61 n n 
C23 H30 4WI sing 62 n n 
C23 H31 4WI sing 63 n n 
C4 H2 4WI sing 64 n n 
C4 H3 4WI sing 65 n n 
C2 H32 4WI sing 66 n n 
C14 H15 4WI sing 67 n n 
N5 H36 4WI sing 68 n n 
N2 H9 4WI sing 69 n n 
N1 H1 4WI sing 70 n n 
N4 H16 4WI sing 71 n n 
#
_atom_sites.entry_id                     8HVN 
_atom_sites.fract_transf_matrix[1][1]    0.014727 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009863 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009657 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4WI A 1 401 1 4WI 9I7 . 
D 2 4WI B 1 401 2 4WI 9I7 . 
E 3 HOH A 1 501 51 HOH HOH . 
E 3 HOH A 2 502 71 HOH HOH . 
E 3 HOH A 3 503 101 HOH HOH . 
E 3 HOH A 4 504 83 HOH HOH . 
E 3 HOH A 5 505 31 HOH HOH . 
E 3 HOH A 6 506 65 HOH HOH . 
E 3 HOH A 7 507 17 HOH HOH . 
E 3 HOH A 8 508 41 HOH HOH . 
E 3 HOH A 9 509 56 HOH HOH . 
E 3 HOH A 10 510 44 HOH HOH . 
E 3 HOH A 11 511 9 HOH HOH . 
E 3 HOH A 12 512 66 HOH HOH . 
E 3 HOH A 13 513 94 HOH HOH . 
E 3 HOH A 14 514 63 HOH HOH . 
E 3 HOH A 15 515 28 HOH HOH . 
E 3 HOH A 16 516 92 HOH HOH . 
E 3 HOH A 17 517 47 HOH HOH . 
E 3 HOH A 18 518 45 HOH HOH . 
E 3 HOH A 19 519 12 HOH HOH . 
E 3 HOH A 20 520 26 HOH HOH . 
E 3 HOH A 21 521 100 HOH HOH . 
E 3 HOH A 22 522 7 HOH HOH . 
E 3 HOH A 23 523 25 HOH HOH . 
E 3 HOH A 24 524 34 HOH HOH . 
E 3 HOH A 25 525 95 HOH HOH . 
E 3 HOH A 26 526 4 HOH HOH . 
E 3 HOH A 27 527 72 HOH HOH . 
E 3 HOH A 28 528 2 HOH HOH . 
E 3 HOH A 29 529 67 HOH HOH . 
E 3 HOH A 30 530 10 HOH HOH . 
E 3 HOH A 31 531 3 HOH HOH . 
E 3 HOH A 32 532 81 HOH HOH . 
E 3 HOH A 33 533 18 HOH HOH . 
E 3 HOH A 34 534 73 HOH HOH . 
E 3 HOH A 35 535 62 HOH HOH . 
E 3 HOH A 36 536 29 HOH HOH . 
E 3 HOH A 37 537 78 HOH HOH . 
E 3 HOH A 38 538 8 HOH HOH . 
E 3 HOH A 39 539 6 HOH HOH . 
E 3 HOH A 40 540 38 HOH HOH . 
E 3 HOH A 41 541 87 HOH HOH . 
E 3 HOH A 42 542 24 HOH HOH . 
E 3 HOH A 43 543 23 HOH HOH . 
E 3 HOH A 44 544 46 HOH HOH . 
E 3 HOH A 45 545 96 HOH HOH . 
E 3 HOH A 46 546 39 HOH HOH . 
E 3 HOH A 47 547 99 HOH HOH . 
E 3 HOH A 48 548 35 HOH HOH . 
E 3 HOH A 49 549 69 HOH HOH . 
E 3 HOH A 50 550 88 HOH HOH . 
E 3 HOH A 51 551 40 HOH HOH . 
E 3 HOH A 52 552 53 HOH HOH . 
E 3 HOH A 53 553 91 HOH HOH . 
E 3 HOH A 54 554 68 HOH HOH . 
E 3 HOH A 55 555 86 HOH HOH . 
E 3 HOH A 56 556 75 HOH HOH . 
E 3 HOH A 57 557 80 HOH HOH . 
E 3 HOH A 58 558 59 HOH HOH . 
E 3 HOH A 59 559 84 HOH HOH . 
E 3 HOH A 60 560 74 HOH HOH . 
E 3 HOH A 61 561 90 HOH HOH . 
E 3 HOH A 62 562 55 HOH HOH . 
E 3 HOH A 63 563 49 HOH HOH . 
E 3 HOH A 64 564 93 HOH HOH . 
E 3 HOH A 65 565 82 HOH HOH . 
E 3 HOH A 66 566 79 HOH HOH . 
E 3 HOH A 67 567 97 HOH HOH . 
E 3 HOH A 68 568 20 HOH HOH . 
F 3 HOH B 1 501 37 HOH HOH . 
F 3 HOH B 2 502 16 HOH HOH . 
F 3 HOH B 3 503 77 HOH HOH . 
F 3 HOH B 4 504 21 HOH HOH . 
F 3 HOH B 5 505 64 HOH HOH . 
F 3 HOH B 6 506 76 HOH HOH . 
F 3 HOH B 7 507 61 HOH HOH . 
F 3 HOH B 8 508 48 HOH HOH . 
F 3 HOH B 9 509 19 HOH HOH . 
F 3 HOH B 10 510 50 HOH HOH . 
F 3 HOH B 11 511 36 HOH HOH . 
F 3 HOH B 12 512 33 HOH HOH . 
F 3 HOH B 13 513 13 HOH HOH . 
F 3 HOH B 14 514 57 HOH HOH . 
F 3 HOH B 15 515 52 HOH HOH . 
F 3 HOH B 16 516 32 HOH HOH . 
F 3 HOH B 17 517 14 HOH HOH . 
F 3 HOH B 18 518 5 HOH HOH . 
F 3 HOH B 19 519 1 HOH HOH . 
F 3 HOH B 20 520 43 HOH HOH . 
F 3 HOH B 21 521 89 HOH HOH . 
F 3 HOH B 22 522 11 HOH HOH . 
F 3 HOH B 23 523 22 HOH HOH . 
F 3 HOH B 24 524 54 HOH HOH . 
F 3 HOH B 25 525 70 HOH HOH . 
F 3 HOH B 26 526 15 HOH HOH . 
F 3 HOH B 27 527 30 HOH HOH . 
F 3 HOH B 28 528 42 HOH HOH . 
F 3 HOH B 29 529 27 HOH HOH . 
F 3 HOH B 30 530 98 HOH HOH . 
F 3 HOH B 31 531 60 HOH HOH . 
F 3 HOH B 32 532 58 HOH HOH . 
F 3 HOH B 33 533 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 4WI . . . C 2 -16.836 -4.214 -26.148 1 34.85 ? C8 4WI 401 A 1 
HETATM 2 C C3 4WI . . . C 2 -21.055 -1.671 -25.089 1 28.93 ? C3 4WI 401 A 1 
HETATM 3 C C1 4WI . . . C 2 -21.4 -3.263 -28.139 1 31.26 ? C1 4WI 401 A 1 
HETATM 4 C C13 4WI . . . C 2 -20.153 -4.608 -30.486 1 34.68 ? C13 4WI 401 A 1 
HETATM 5 C C21 4WI . . . C 2 -19.527 -5.051 -33.744 1 39.49 ? C21 4WI 401 A 1 
HETATM 6 C C6 4WI . . . C 2 -18.794 -5.391 -25.693 1 31.94 ? C6 4WI 401 A 1 
HETATM 7 C C7 4WI . . . C 2 -17.639 -6.373 -25.945 1 35.08 ? C7 4WI 401 A 1 
HETATM 8 C C10 4WI . . . C 2 -22.652 -4.482 -30.994 1 34.91 ? C10 4WI 401 A 1 
HETATM 9 C C5 4WI . . . C 2 -18.257 -4.129 -26.377 1 31.93 ? C5 4WI 401 A 1 
HETATM 10 C C9 4WI . . . C 2 -21.607 -2.888 -29.479 1 31.55 ? C9 4WI 401 A 1 
HETATM 11 C C11 4WI . . . C 2 -23.681 -3.367 -30.688 1 34.95 ? C11 4WI 401 A 1 
HETATM 12 C C12 4WI . . . C 2 -23.04 -2.389 -29.764 1 33.12 ? C12 4WI 401 A 1 
HETATM 13 C C18 4WI . . . C 2 -23.268 -2.081 -31.148 1 33.11 ? C18 4WI 401 A 1 
HETATM 14 C C19 4WI . . . C 2 -22.403 -1.658 -32.263 1 32.19 ? C19 4WI 401 A 1 
HETATM 15 C C20 4WI . . . C 2 -24.48 -1.148 -31.277 1 33.8 ? C20 4WI 401 A 1 
HETATM 16 C C16 4WI . . . C 2 -18.456 -7.071 -29.663 1 34.26 ? C16 4WI 401 A 1 
HETATM 17 C C17 4WI . . . C 2 -20.564 -7.254 -29.949 1 32.43 ? C17 4WI 401 A 1 
HETATM 18 C C23 4WI . . . C 2 -19.722 -8.432 -31.541 1 38.55 ? C23 4WI 401 A 1 
HETATM 19 C C4 4WI . . . C 2 -18.879 -2.851 -25.738 1 28.06 ? C4 4WI 401 A 1 
HETATM 20 C C2 4WI . . . C 2 -20.427 -2.736 -25.991 1 29.12 ? C2 4WI 401 A 1 
HETATM 21 C C14 4WI . . . C 2 -20.024 -5.802 -31.468 1 33.53 ? C14 4WI 401 A 1 
HETATM 22 C C22 4WI . . . C 2 -18.417 -4.647 -34.703 1 41.08 ? C22 4WI 401 A 1 
HETATM 23 C C15 4WI . . . C 2 -19.361 -7.083 -30.908 1 38.48 ? C15 4WI 401 A 1 
HETATM 24 N N5 4WI . . . C 2 -21.314 -2.091 -23.842 1 30.75 ? N5 4WI 401 A 1 
HETATM 25 N N2 4WI . . . C 2 -16.429 -5.468 -25.881 1 33.74 ? N2 4WI 401 A 1 
HETATM 26 N N3 4WI . . . C 2 -21.378 -4.062 -30.363 1 35.46 ? N3 4WI 401 A 1 
HETATM 27 N N1 4WI . . . C 2 -20.725 -2.388 -27.385 1 27.61 ? N1 4WI 401 A 1 
HETATM 28 N N4 4WI . . . C 2 -19.11 -5.37 -32.523 1 34.78 ? N4 4WI 401 A 1 
HETATM 29 O O1 4WI . . . C 2 -16.052 -3.254 -26.162 1 29.62 ? O1 4WI 401 A 1 
HETATM 30 O O2 4WI . . . C 2 -21.73 -4.372 -27.728 1 33.38 ? O2 4WI 401 A 1 
HETATM 31 O O3 4WI . . . C 2 -19.18 -4.143 -29.897 1 32.62 ? O3 4WI 401 A 1 
HETATM 32 O O4 4WI . . . C 2 -20.701 -5.112 -34.111 1 41.02 ? O4 4WI 401 A 1 
HETATM 33 F F1 4WI . . . C 2 -17.696 -3.621 -34.23 1 42.59 ? F1 4WI 401 A 1 
HETATM 34 F F2 4WI . . . C 2 -17.55 -5.71 -34.881 1 46.12 ? F2 4WI 401 A 1 
HETATM 35 F F3 4WI . . . C 2 -18.986 -4.294 -35.823 1 48.19 ? F3 4WI 401 A 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#