data_8HVO
#
_model_server_result.job_id            F69DkjNSpQG3CuvVvT16VQ 
_model_server_result.datetime_utc      '2024-11-14 03:33:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hvo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    8HVO 
#
_exptl.entry_id    8HVO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              501.542 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.822 
_cell.angle_gamma         90 
_cell.entry_id            8HVO 
_cell.length_a            55.74 
_cell.length_b            99.191 
_cell.length_c            59.513 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HVO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C23 H34 F3 N5 O4' 
_chem_comp.formula_weight    501.542 
_chem_comp.id                4WI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PF-07321332, bound form;nirmatrelvir, bound form;Paxlovid, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C8 4WI doub 1 n n 
C8 N2 4WI sing 2 n n 
C8 C5 4WI sing 3 n n 
N2 C7 4WI sing 4 n n 
C4 C5 4WI sing 5 n n 
C4 C2 4WI sing 6 n n 
C5 C6 4WI sing 7 n n 
N5 C3 4WI doub 8 n n 
C3 C2 4WI sing 9 n n 
C7 C6 4WI sing 10 n n 
C2 N1 4WI sing 11 n n 
N1 C1 4WI sing 12 n n 
F1 C22 4WI sing 13 n n 
O3 C13 4WI doub 14 n n 
C1 C9 4WI sing 15 n n 
C1 O2 4WI doub 16 n n 
F3 C22 4WI sing 17 n n 
C23 C15 4WI sing 18 n n 
C22 F2 4WI sing 19 n n 
C22 C21 4WI sing 20 n n 
C9 N3 4WI sing 21 n n 
C9 C12 4WI sing 22 n n 
C13 N3 4WI sing 23 n n 
C13 C14 4WI sing 24 n n 
N4 C21 4WI sing 25 n n 
N4 C14 4WI sing 26 n n 
C19 C18 4WI sing 27 n n 
N3 C10 4WI sing 28 n n 
C21 O4 4WI doub 29 n n 
C12 C18 4WI sing 30 n n 
C12 C11 4WI sing 31 n n 
C14 C15 4WI sing 32 n n 
C15 C17 4WI sing 33 n n 
C15 C16 4WI sing 34 n n 
C18 C20 4WI sing 35 n n 
C18 C11 4WI sing 36 n n 
C10 C11 4WI sing 37 n n 
C3 H33 4WI sing 38 n n 
C6 H5 4WI sing 39 n n 
C6 H6 4WI sing 40 n n 
C7 H7 4WI sing 41 n n 
C7 H8 4WI sing 42 n n 
C10 H11 4WI sing 43 n n 
C10 H12 4WI sing 44 n n 
C5 H4 4WI sing 45 n n 
C9 H10 4WI sing 46 n n 
C11 H13 4WI sing 47 n n 
C12 H14 4WI sing 48 n n 
C19 H23 4WI sing 49 n n 
C19 H24 4WI sing 50 n n 
C19 H25 4WI sing 51 n n 
C20 H26 4WI sing 52 n n 
C20 H27 4WI sing 53 n n 
C20 H28 4WI sing 54 n n 
C16 H17 4WI sing 55 n n 
C16 H19 4WI sing 56 n n 
C16 H18 4WI sing 57 n n 
C17 H20 4WI sing 58 n n 
C17 H21 4WI sing 59 n n 
C17 H22 4WI sing 60 n n 
C23 H29 4WI sing 61 n n 
C23 H30 4WI sing 62 n n 
C23 H31 4WI sing 63 n n 
C4 H2 4WI sing 64 n n 
C4 H3 4WI sing 65 n n 
C2 H32 4WI sing 66 n n 
C14 H15 4WI sing 67 n n 
N5 H36 4WI sing 68 n n 
N2 H9 4WI sing 69 n n 
N1 H1 4WI sing 70 n n 
N4 H16 4WI sing 71 n n 
#
_atom_sites.entry_id                     8HVO 
_atom_sites.fract_transf_matrix[1][1]    0.01794 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006115 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010082 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017752 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4WI A 1 401 1 4WI 9I7 . 
D 2 4WI B 1 401 2 4WI 9I7 . 
E 3 HOH A 1 501 63 HOH HOH . 
E 3 HOH A 2 502 38 HOH HOH . 
E 3 HOH A 3 503 78 HOH HOH . 
E 3 HOH A 4 504 80 HOH HOH . 
E 3 HOH A 5 505 6 HOH HOH . 
E 3 HOH A 6 506 68 HOH HOH . 
E 3 HOH A 7 507 59 HOH HOH . 
E 3 HOH A 8 508 43 HOH HOH . 
E 3 HOH A 9 509 84 HOH HOH . 
E 3 HOH A 10 510 32 HOH HOH . 
E 3 HOH A 11 511 29 HOH HOH . 
E 3 HOH A 12 512 69 HOH HOH . 
E 3 HOH A 13 513 5 HOH HOH . 
E 3 HOH A 14 514 17 HOH HOH . 
E 3 HOH A 15 515 27 HOH HOH . 
E 3 HOH A 16 516 40 HOH HOH . 
E 3 HOH A 17 517 13 HOH HOH . 
E 3 HOH A 18 518 3 HOH HOH . 
E 3 HOH A 19 519 47 HOH HOH . 
E 3 HOH A 20 520 51 HOH HOH . 
E 3 HOH A 21 521 7 HOH HOH . 
E 3 HOH A 22 522 11 HOH HOH . 
E 3 HOH A 23 523 9 HOH HOH . 
E 3 HOH A 24 524 14 HOH HOH . 
E 3 HOH A 25 525 31 HOH HOH . 
E 3 HOH A 26 526 85 HOH HOH . 
E 3 HOH A 27 527 21 HOH HOH . 
E 3 HOH A 28 528 1 HOH HOH . 
E 3 HOH A 29 529 70 HOH HOH . 
E 3 HOH A 30 530 52 HOH HOH . 
E 3 HOH A 31 531 37 HOH HOH . 
E 3 HOH A 32 532 67 HOH HOH . 
E 3 HOH A 33 533 72 HOH HOH . 
E 3 HOH A 34 534 54 HOH HOH . 
E 3 HOH A 35 535 61 HOH HOH . 
E 3 HOH A 36 536 71 HOH HOH . 
E 3 HOH A 37 537 64 HOH HOH . 
E 3 HOH A 38 538 26 HOH HOH . 
E 3 HOH A 39 539 36 HOH HOH . 
E 3 HOH A 40 540 65 HOH HOH . 
E 3 HOH A 41 541 20 HOH HOH . 
E 3 HOH A 42 542 62 HOH HOH . 
E 3 HOH A 43 543 44 HOH HOH . 
E 3 HOH A 44 544 89 HOH HOH . 
E 3 HOH A 45 545 35 HOH HOH . 
E 3 HOH A 46 546 25 HOH HOH . 
E 3 HOH A 47 547 87 HOH HOH . 
E 3 HOH A 48 548 90 HOH HOH . 
E 3 HOH A 49 549 73 HOH HOH . 
E 3 HOH A 50 550 77 HOH HOH . 
E 3 HOH A 51 551 56 HOH HOH . 
F 3 HOH B 1 501 46 HOH HOH . 
F 3 HOH B 2 502 74 HOH HOH . 
F 3 HOH B 3 503 55 HOH HOH . 
F 3 HOH B 4 504 45 HOH HOH . 
F 3 HOH B 5 505 24 HOH HOH . 
F 3 HOH B 6 506 4 HOH HOH . 
F 3 HOH B 7 507 18 HOH HOH . 
F 3 HOH B 8 508 83 HOH HOH . 
F 3 HOH B 9 509 66 HOH HOH . 
F 3 HOH B 10 510 60 HOH HOH . 
F 3 HOH B 11 511 12 HOH HOH . 
F 3 HOH B 12 512 33 HOH HOH . 
F 3 HOH B 13 513 81 HOH HOH . 
F 3 HOH B 14 514 28 HOH HOH . 
F 3 HOH B 15 515 23 HOH HOH . 
F 3 HOH B 16 516 2 HOH HOH . 
F 3 HOH B 17 517 15 HOH HOH . 
F 3 HOH B 18 518 41 HOH HOH . 
F 3 HOH B 19 519 22 HOH HOH . 
F 3 HOH B 20 520 86 HOH HOH . 
F 3 HOH B 21 521 88 HOH HOH . 
F 3 HOH B 22 522 8 HOH HOH . 
F 3 HOH B 23 523 16 HOH HOH . 
F 3 HOH B 24 524 82 HOH HOH . 
F 3 HOH B 25 525 53 HOH HOH . 
F 3 HOH B 26 526 42 HOH HOH . 
F 3 HOH B 27 527 50 HOH HOH . 
F 3 HOH B 28 528 49 HOH HOH . 
F 3 HOH B 29 529 34 HOH HOH . 
F 3 HOH B 30 530 30 HOH HOH . 
F 3 HOH B 31 531 39 HOH HOH . 
F 3 HOH B 32 532 79 HOH HOH . 
F 3 HOH B 33 533 10 HOH HOH . 
F 3 HOH B 34 534 19 HOH HOH . 
F 3 HOH B 35 535 48 HOH HOH . 
F 3 HOH B 36 536 91 HOH HOH . 
F 3 HOH B 37 537 75 HOH HOH . 
F 3 HOH B 38 538 58 HOH HOH . 
F 3 HOH B 39 539 57 HOH HOH . 
F 3 HOH B 40 540 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 4WI . . . D 2 6.12 15 25.485 1 21.09 ? C8 4WI 401 B 1 
HETATM 2 C C3 4WI . . . D 2 8.541 12.258 28.744 1 20.14 ? C3 4WI 401 B 1 
HETATM 3 C C1 4WI . . . D 2 10.207 15.389 28.522 1 26.12 ? C1 4WI 401 B 1 
HETATM 4 C C13 4WI . . . D 2 10.696 17.791 26.779 1 29.54 ? C13 4WI 401 B 1 
HETATM 5 C C21 4WI . . . D 2 12.321 20.135 24.941 1 32.85 ? C21 4WI 401 B 1 
HETATM 6 C C6 4WI . . . D 2 6.145 15.684 27.667 1 22.32 ? C6 4WI 401 B 1 
HETATM 7 C C7 4WI . . . D 2 5.296 16.638 26.867 1 23.93 ? C7 4WI 401 B 1 
HETATM 8 C C10 4WI . . . D 2 12.174 18.03 28.88 1 29.58 ? C10 4WI 401 B 1 
HETATM 9 C C5 4WI . . . D 2 7.025 15.096 26.588 1 22.24 ? C5 4WI 401 B 1 
HETATM 10 C C9 4WI . . . D 2 11.458 15.846 28.039 1 26.93 ? C9 4WI 401 B 1 
HETATM 11 C C11 4WI . . . D 2 13.073 16.974 29.53 1 33.52 ? C11 4WI 401 B 1 
HETATM 12 C C12 4WI . . . D 2 12.611 15.631 29.04 1 25.95 ? C12 4WI 401 B 1 
HETATM 13 C C18 4WI . . . D 2 13.865 16.213 28.616 1 25.47 ? C18 4WI 401 B 1 
HETATM 14 C C19 4WI . . . D 2 14.47 16.498 27.308 1 21.82 ? C19 4WI 401 B 1 
HETATM 15 C C20 4WI . . . D 2 15.041 15.574 29.376 1 24.92 ? C20 4WI 401 B 1 
HETATM 16 C C16 4WI . . . D 2 7.997 19.185 26.49 1 33.24 ? C16 4WI 401 B 1 
HETATM 17 C C17 4WI . . . D 2 9.204 19.67 28.132 1 29.31 ? C17 4WI 401 B 1 
HETATM 18 C C23 4WI . . . D 2 9.232 21.475 27.008 1 31.59 ? C23 4WI 401 B 1 
HETATM 19 C C4 4WI . . . D 2 7.486 13.699 27.026 1 19.92 ? C4 4WI 401 B 1 
HETATM 20 C C2 4WI . . . D 2 8.404 13.71 28.282 1 21.2 ? C2 4WI 401 B 1 
HETATM 21 C C14 4WI . . . D 2 10.684 19.32 26.566 1 28.24 ? C14 4WI 401 B 1 
HETATM 22 C C22 4WI . . . D 2 12.596 20.292 23.463 1 36.94 ? C22 4WI 401 B 1 
HETATM 23 C C15 4WI . . . D 2 9.292 19.99 26.628 1 32.13 ? C15 4WI 401 B 1 
HETATM 24 N N5 4WI . . . D 2 7.784 11.895 29.782 1 23.68 ? N5 4WI 401 B 1 
HETATM 25 N N2 4WI . . . D 2 5.1 15.87 25.612 1 23.01 ? N2 4WI 401 B 1 
HETATM 26 N N3 4WI . . . D 2 11.408 17.314 27.811 1 31.65 ? N3 4WI 401 B 1 
HETATM 27 N N1 4WI . . . D 2 9.735 14.27 27.949 1 23.16 ? N1 4WI 401 B 1 
HETATM 28 N N4 4WI . . . D 2 11.148 19.568 25.205 1 27.97 ? N4 4WI 401 B 1 
HETATM 29 O O1 4WI . . . D 2 6.232 14.234 24.52 1 23.91 ? O1 4WI 401 B 1 
HETATM 30 O O2 4WI . . . D 2 9.573 16.022 29.361 1 25.99 ? O2 4WI 401 B 1 
HETATM 31 O O3 4WI . . . D 2 10.138 17.041 25.99 1 25.5 ? O3 4WI 401 B 1 
HETATM 32 O O4 4WI . . . D 2 13.111 20.51 25.812 1 32.97 ? O4 4WI 401 B 1 
HETATM 33 F F1 4WI . . . D 2 14.015 20.229 23.431 1 33.52 ? F1 4WI 401 B 1 
HETATM 34 F F2 4WI . . . D 2 12.405 21.275 23.038 1 36.6 ? F2 4WI 401 B 1 
HETATM 35 F F3 4WI . . . D 2 12.32 19.41 22.81 1 44.89 ? F3 4WI 401 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           35 
#