data_8HVW # _model_server_result.job_id 5kCsK6aFBYHD-d9-9ycXjQ _model_server_result.datetime_utc '2024-11-21 18:05:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8HVW # _exptl.entry_id 8HVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 552.514 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.941 _cell.angle_gamma 90 _cell.entry_id 8HVW _cell.length_a 55.13 _cell.length_b 99.23 _cell.length_c 59.64 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H33 N4 O9 P' _chem_comp.formula_weight 552.514 _chem_comp.id 80I _chem_comp.mon_nstd_flag . _chem_comp.name '[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N22 C23 80I sing 1 n n N22 C21 80I sing 2 n n C23 C24 80I sing 3 n n C21 O25 80I doub 4 n n C21 C20 80I sing 5 n n C24 C20 80I sing 6 n n C20 C19 80I sing 7 n n C08 C09 80I doub 8 n y C08 C07 80I sing 9 n y C09 C10 80I sing 10 n y C19 C18 80I sing 11 n n C07 N04 80I sing 12 n y C07 C06 80I doub 13 n y C10 C11 80I doub 14 n y N04 C03 80I sing 15 n y O31 P29 80I doub 16 n n C18 C26 80I sing 17 n n C18 N17 80I sing 18 n n O32 P29 80I sing 19 n n C06 C11 80I sing 20 n y C06 C05 80I sing 21 n y C11 O12 80I sing 22 n n O33 C26 80I doub 23 n n O01 C02 80I doub 24 n n C03 C02 80I sing 25 n n C03 C05 80I doub 26 n y C26 C27 80I sing 27 n n C02 N14 80I sing 28 n n P29 O28 80I sing 29 n n P29 O30 80I sing 30 n n O34 C16 80I doub 31 n n N17 C16 80I sing 32 n n O12 C13 80I sing 33 n n C16 C15 80I sing 34 n n O28 C27 80I sing 35 n n N14 C15 80I sing 36 n n C15 C35 80I sing 37 n n C35 C36 80I sing 38 n n C36 C38 80I sing 39 n n C36 C37 80I sing 40 n n C10 H1 80I sing 41 n n C13 H2 80I sing 42 n n C13 H3 80I sing 43 n n C13 H4 80I sing 44 n n C15 H5 80I sing 45 n n C20 H6 80I sing 46 n n C24 H7 80I sing 47 n n C24 H8 80I sing 48 n n C05 H9 80I sing 49 n n C08 H10 80I sing 50 n n C09 H11 80I sing 51 n n C18 H12 80I sing 52 n n C19 H13 80I sing 53 n n C19 H14 80I sing 54 n n C23 H15 80I sing 55 n n C27 H16 80I sing 56 n n C27 H17 80I sing 57 n n C35 H18 80I sing 58 n n C35 H19 80I sing 59 n n C36 H20 80I sing 60 n n C37 H21 80I sing 61 n n C37 H22 80I sing 62 n n C37 H23 80I sing 63 n n C38 H24 80I sing 64 n n C38 H25 80I sing 65 n n C38 H26 80I sing 66 n n N04 H27 80I sing 67 n n N14 H28 80I sing 68 n n N17 H29 80I sing 69 n n O30 H30 80I sing 70 n n O32 H31 80I sing 71 n n N22 H32 80I sing 72 n n C23 H33 80I sing 73 n n # _atom_sites.entry_id 8HVW _atom_sites.fract_transf_matrix[1][1] 0.018139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005873 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 80I A 1 401 1 80I LIG . D 2 80I B 1 401 2 80I LIG . E 3 HOH A 1 501 38 HOH HOH . E 3 HOH A 2 502 32 HOH HOH . E 3 HOH A 3 503 12 HOH HOH . E 3 HOH A 4 504 31 HOH HOH . E 3 HOH A 5 505 5 HOH HOH . E 3 HOH A 6 506 25 HOH HOH . E 3 HOH A 7 507 28 HOH HOH . E 3 HOH A 8 508 27 HOH HOH . E 3 HOH A 9 509 16 HOH HOH . E 3 HOH A 10 510 2 HOH HOH . E 3 HOH A 11 511 41 HOH HOH . E 3 HOH A 12 512 9 HOH HOH . E 3 HOH A 13 513 3 HOH HOH . E 3 HOH A 14 514 48 HOH HOH . E 3 HOH A 15 515 49 HOH HOH . E 3 HOH A 16 516 7 HOH HOH . E 3 HOH A 17 517 11 HOH HOH . E 3 HOH A 18 518 43 HOH HOH . E 3 HOH A 19 519 44 HOH HOH . E 3 HOH A 20 520 40 HOH HOH . E 3 HOH A 21 521 30 HOH HOH . E 3 HOH A 22 522 19 HOH HOH . E 3 HOH A 23 523 42 HOH HOH . E 3 HOH A 24 524 46 HOH HOH . E 3 HOH A 25 525 14 HOH HOH . E 3 HOH A 26 526 52 HOH HOH . E 3 HOH A 27 527 47 HOH HOH . F 3 HOH B 1 501 35 HOH HOH . F 3 HOH B 2 502 20 HOH HOH . F 3 HOH B 3 503 51 HOH HOH . F 3 HOH B 4 504 8 HOH HOH . F 3 HOH B 5 505 1 HOH HOH . F 3 HOH B 6 506 21 HOH HOH . F 3 HOH B 7 507 10 HOH HOH . F 3 HOH B 8 508 6 HOH HOH . F 3 HOH B 9 509 39 HOH HOH . F 3 HOH B 10 510 15 HOH HOH . F 3 HOH B 11 511 17 HOH HOH . F 3 HOH B 12 512 4 HOH HOH . F 3 HOH B 13 513 29 HOH HOH . F 3 HOH B 14 514 22 HOH HOH . F 3 HOH B 15 515 50 HOH HOH . F 3 HOH B 16 516 53 HOH HOH . F 3 HOH B 17 517 33 HOH HOH . F 3 HOH B 18 518 24 HOH HOH . F 3 HOH B 19 519 23 HOH HOH . F 3 HOH B 20 520 45 HOH HOH . F 3 HOH B 21 521 34 HOH HOH . F 3 HOH B 22 522 37 HOH HOH . F 3 HOH B 23 523 13 HOH HOH . F 3 HOH B 24 524 18 HOH HOH . F 3 HOH B 25 525 36 HOH HOH . F 3 HOH B 26 526 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 80I . . . C 2 -23.691 -8.202 -3.548 1 42.2 ? C10 80I 401 A 1 HETATM 2 C C13 80I . . . C 2 -24.083 -11.067 -3.982 1 43.56 ? C13 80I 401 A 1 HETATM 3 C C15 80I . . . C 2 -21.006 -11.32 3.606 1 34.83 ? C15 80I 401 A 1 HETATM 4 C C20 80I . . . C 2 -16.563 -8.931 3.75 1 37.76 ? C20 80I 401 A 1 HETATM 5 C C21 80I . . . C 2 -15.865 -7.743 3.97 1 41 ? C21 80I 401 A 1 HETATM 6 C C24 80I . . . C 2 -15.706 -9.686 2.581 1 41.64 ? C24 80I 401 A 1 HETATM 7 C C26 80I . . . C 2 -16.798 -12.32 5.678 1 38.94 ? C26 80I 401 A 1 HETATM 8 C C02 80I . . . C 2 -21.225 -9.491 1.9 1 39.77 ? C02 80I 401 A 1 HETATM 9 C C03 80I . . . C 2 -21.778 -9.032 0.548 1 43.04 ? C03 80I 401 A 1 HETATM 10 C C05 80I . . . C 2 -22.612 -9.789 -0.275 1 37.89 ? C05 80I 401 A 1 HETATM 11 C C06 80I . . . C 2 -22.87 -9.007 -1.413 1 41.54 ? C06 80I 401 A 1 HETATM 12 C C07 80I . . . C 2 -22.18 -7.82 -1.226 1 41.58 ? C07 80I 401 A 1 HETATM 13 C C08 80I . . . C 2 -22.25 -6.81 -2.209 1 41.53 ? C08 80I 401 A 1 HETATM 14 C C09 80I . . . C 2 -23.001 -7.001 -3.366 1 42.07 ? C09 80I 401 A 1 HETATM 15 C C11 80I . . . C 2 -23.635 -9.208 -2.587 1 41.26 ? C11 80I 401 A 1 HETATM 16 C C16 80I . . . C 2 -19.486 -11.418 3.528 1 40.19 ? C16 80I 401 A 1 HETATM 17 C C18 80I . . . C 2 -17.261 -11.193 4.72 1 37.19 ? C18 80I 401 A 1 HETATM 18 C C19 80I . . . C 2 -16.651 -9.806 5.015 1 36 ? C19 80I 401 A 1 HETATM 19 C C23 80I . . . C 2 -15.131 -8.679 1.869 1 39.78 ? C23 80I 401 A 1 HETATM 20 C C27 80I . . . C 2 -17.611 -13.608 5.7 1 39.3 ? C27 80I 401 A 1 HETATM 21 C C35 80I . . . C 2 -21.615 -12.696 3.883 1 36.29 ? C35 80I 401 A 1 HETATM 22 C C36 80I . . . C 2 -22.752 -12.664 4.908 1 36.75 ? C36 80I 401 A 1 HETATM 23 C C37 80I . . . C 2 -23.408 -11.294 5.031 1 39.05 ? C37 80I 401 A 1 HETATM 24 C C38 80I . . . C 2 -23.817 -13.712 4.609 1 39.09 ? C38 80I 401 A 1 HETATM 25 N N04 80I . . . C 2 -21.54 -7.873 -0.042 1 38.73 ? N04 80I 401 A 1 HETATM 26 N N14 80I . . . C 2 -21.503 -10.839 2.344 1 38.73 ? N14 80I 401 A 1 HETATM 27 N N17 80I . . . C 2 -18.712 -11.114 4.726 1 34.03 ? N17 80I 401 A 1 HETATM 28 N N22 80I . . . C 2 -14.965 -7.495 2.887 1 39.37 ? N22 80I 401 A 1 HETATM 29 O O01 80I . . . C 2 -20.569 -8.777 2.58 1 39.13 ? O01 80I 401 A 1 HETATM 30 O O12 80I . . . C 2 -24.352 -10.401 -2.782 1 40.69 ? O12 80I 401 A 1 HETATM 31 O O25 80I . . . C 2 -15.982 -7.034 4.916 1 37.62 ? O25 80I 401 A 1 HETATM 32 O O28 80I . . . C 2 -17.39 -14.189 4.441 1 38.17 ? O28 80I 401 A 1 HETATM 33 O O30 80I . . . C 2 -15.431 -14.71 2.796 1 46.66 -1 O30 80I 401 A 1 HETATM 34 O O31 80I . . . C 2 -16.302 -16.532 4.242 1 47.58 -1 O31 80I 401 A 1 HETATM 35 O O32 80I . . . C 2 -14.945 -14.679 5.162 1 43.88 ? O32 80I 401 A 1 HETATM 36 O O33 80I . . . C 2 -15.77 -12.28 6.28 1 35.59 ? O33 80I 401 A 1 HETATM 37 O O34 80I . . . C 2 -18.953 -11.737 2.513 1 38.55 ? O34 80I 401 A 1 HETATM 38 P P29 80I . . . C 2 -16 -15.048 4.151 1 43.63 ? P29 80I 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #