data_8HVX # _model_server_result.job_id vEhK3jNlhMR8AoKTzEc5qw _model_server_result.datetime_utc '2024-11-21 18:20:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8HVX # _exptl.entry_id 8HVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 552.514 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.513 _cell.angle_gamma 90 _cell.entry_id 8HVX _cell.length_a 55.159 _cell.length_b 99.346 _cell.length_c 59.802 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H33 N4 O9 P' _chem_comp.formula_weight 552.514 _chem_comp.id 80I _chem_comp.mon_nstd_flag . _chem_comp.name '[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N22 C23 80I sing 1 n n N22 C21 80I sing 2 n n C23 C24 80I sing 3 n n C21 O25 80I doub 4 n n C21 C20 80I sing 5 n n C24 C20 80I sing 6 n n C20 C19 80I sing 7 n n C08 C09 80I doub 8 n y C08 C07 80I sing 9 n y C09 C10 80I sing 10 n y C19 C18 80I sing 11 n n C07 N04 80I sing 12 n y C07 C06 80I doub 13 n y C10 C11 80I doub 14 n y N04 C03 80I sing 15 n y O31 P29 80I doub 16 n n C18 C26 80I sing 17 n n C18 N17 80I sing 18 n n O32 P29 80I sing 19 n n C06 C11 80I sing 20 n y C06 C05 80I sing 21 n y C11 O12 80I sing 22 n n O33 C26 80I doub 23 n n O01 C02 80I doub 24 n n C03 C02 80I sing 25 n n C03 C05 80I doub 26 n y C26 C27 80I sing 27 n n C02 N14 80I sing 28 n n P29 O28 80I sing 29 n n P29 O30 80I sing 30 n n O34 C16 80I doub 31 n n N17 C16 80I sing 32 n n O12 C13 80I sing 33 n n C16 C15 80I sing 34 n n O28 C27 80I sing 35 n n N14 C15 80I sing 36 n n C15 C35 80I sing 37 n n C35 C36 80I sing 38 n n C36 C38 80I sing 39 n n C36 C37 80I sing 40 n n C10 H1 80I sing 41 n n C13 H2 80I sing 42 n n C13 H3 80I sing 43 n n C13 H4 80I sing 44 n n C15 H5 80I sing 45 n n C20 H6 80I sing 46 n n C24 H7 80I sing 47 n n C24 H8 80I sing 48 n n C05 H9 80I sing 49 n n C08 H10 80I sing 50 n n C09 H11 80I sing 51 n n C18 H12 80I sing 52 n n C19 H13 80I sing 53 n n C19 H14 80I sing 54 n n C23 H15 80I sing 55 n n C27 H16 80I sing 56 n n C27 H17 80I sing 57 n n C35 H18 80I sing 58 n n C35 H19 80I sing 59 n n C36 H20 80I sing 60 n n C37 H21 80I sing 61 n n C37 H22 80I sing 62 n n C37 H23 80I sing 63 n n C38 H24 80I sing 64 n n C38 H25 80I sing 65 n n C38 H26 80I sing 66 n n N04 H27 80I sing 67 n n N14 H28 80I sing 68 n n N17 H29 80I sing 69 n n O30 H30 80I sing 70 n n O32 H31 80I sing 71 n n N22 H32 80I sing 72 n n C23 H33 80I sing 73 n n # _atom_sites.entry_id 8HVX _atom_sites.fract_transf_matrix[1][1] 0.018129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005721 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 80I A 1 401 1 80I LIG . D 2 80I B 1 401 2 80I LIG . E 3 HOH A 1 501 44 HOH HOH . E 3 HOH A 2 502 22 HOH HOH . E 3 HOH A 3 503 54 HOH HOH . E 3 HOH A 4 504 21 HOH HOH . E 3 HOH A 5 505 4 HOH HOH . E 3 HOH A 6 506 16 HOH HOH . E 3 HOH A 7 507 38 HOH HOH . E 3 HOH A 8 508 40 HOH HOH . E 3 HOH A 9 509 37 HOH HOH . E 3 HOH A 10 510 14 HOH HOH . E 3 HOH A 11 511 46 HOH HOH . E 3 HOH A 12 512 49 HOH HOH . E 3 HOH A 13 513 19 HOH HOH . E 3 HOH A 14 514 5 HOH HOH . E 3 HOH A 15 515 2 HOH HOH . E 3 HOH A 16 516 36 HOH HOH . E 3 HOH A 17 517 33 HOH HOH . E 3 HOH A 18 518 12 HOH HOH . E 3 HOH A 19 519 9 HOH HOH . E 3 HOH A 20 520 17 HOH HOH . E 3 HOH A 21 521 43 HOH HOH . E 3 HOH A 22 522 47 HOH HOH . E 3 HOH A 23 523 32 HOH HOH . E 3 HOH A 24 524 52 HOH HOH . E 3 HOH A 25 525 31 HOH HOH . E 3 HOH A 26 526 10 HOH HOH . E 3 HOH A 27 527 29 HOH HOH . F 3 HOH B 1 501 53 HOH HOH . F 3 HOH B 2 502 6 HOH HOH . F 3 HOH B 3 503 26 HOH HOH . F 3 HOH B 4 504 11 HOH HOH . F 3 HOH B 5 505 51 HOH HOH . F 3 HOH B 6 506 25 HOH HOH . F 3 HOH B 7 507 45 HOH HOH . F 3 HOH B 8 508 23 HOH HOH . F 3 HOH B 9 509 7 HOH HOH . F 3 HOH B 10 510 35 HOH HOH . F 3 HOH B 11 511 13 HOH HOH . F 3 HOH B 12 512 42 HOH HOH . F 3 HOH B 13 513 3 HOH HOH . F 3 HOH B 14 514 20 HOH HOH . F 3 HOH B 15 515 18 HOH HOH . F 3 HOH B 16 516 34 HOH HOH . F 3 HOH B 17 517 28 HOH HOH . F 3 HOH B 18 518 50 HOH HOH . F 3 HOH B 19 519 1 HOH HOH . F 3 HOH B 20 520 15 HOH HOH . F 3 HOH B 21 521 39 HOH HOH . F 3 HOH B 22 522 24 HOH HOH . F 3 HOH B 23 523 30 HOH HOH . F 3 HOH B 24 524 8 HOH HOH . F 3 HOH B 25 525 27 HOH HOH . F 3 HOH B 26 526 48 HOH HOH . F 3 HOH B 27 527 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 80I . . . C 2 -23.138 -8.048 -3.396 1 56.24 ? C10 80I 401 A 1 HETATM 2 C C13 80I . . . C 2 -24.029 -10.516 -4.11 1 60.77 ? C13 80I 401 A 1 HETATM 3 C C15 80I . . . C 2 -20.612 -11.201 3.84 1 45.1 ? C15 80I 401 A 1 HETATM 4 C C20 80I . . . C 2 -16.204 -8.845 3.816 1 39.91 ? C20 80I 401 A 1 HETATM 5 C C21 80I . . . C 2 -15.429 -7.718 4.098 1 37.84 ? C21 80I 401 A 1 HETATM 6 C C24 80I . . . C 2 -15.512 -9.536 2.506 1 41.1 ? C24 80I 401 A 1 HETATM 7 C C26 80I . . . C 2 -16.605 -12.243 5.843 1 37.09 ? C26 80I 401 A 1 HETATM 8 C C02 80I . . . C 2 -20.929 -9.402 2.118 1 44.86 ? C02 80I 401 A 1 HETATM 9 C C03 80I . . . C 2 -21.419 -8.966 0.746 1 47.26 ? C03 80I 401 A 1 HETATM 10 C C05 80I . . . C 2 -22.193 -9.721 -0.132 1 55.25 ? C05 80I 401 A 1 HETATM 11 C C06 80I . . . C 2 -22.418 -8.903 -1.254 1 54.49 ? C06 80I 401 A 1 HETATM 12 C C07 80I . . . C 2 -21.785 -7.705 -0.989 1 53.58 ? C07 80I 401 A 1 HETATM 13 C C08 80I . . . C 2 -21.823 -6.663 -1.93 1 54.94 ? C08 80I 401 A 1 HETATM 14 C C09 80I . . . C 2 -22.498 -6.844 -3.128 1 58 ? C09 80I 401 A 1 HETATM 15 C C11 80I . . . C 2 -23.104 -9.083 -2.471 1 60.47 ? C11 80I 401 A 1 HETATM 16 C C16 80I . . . C 2 -19.148 -11.12 4.301 1 45.89 ? C16 80I 401 A 1 HETATM 17 C C18 80I . . . C 2 -16.665 -11.284 4.61 1 40.31 ? C18 80I 401 A 1 HETATM 18 C C19 80I . . . C 2 -16.268 -9.835 4.994 1 35.78 ? C19 80I 401 A 1 HETATM 19 C C23 80I . . . C 2 -14.589 -8.664 2.022 1 40.51 ? C23 80I 401 A 1 HETATM 20 C C27 80I . . . C 2 -17.549 -13.424 5.91 1 41.5 ? C27 80I 401 A 1 HETATM 21 C C35 80I . . . C 2 -21.214 -12.574 4.179 1 47.6 ? C35 80I 401 A 1 HETATM 22 C C36 80I . . . C 2 -22.653 -12.414 4.666 1 45.04 ? C36 80I 401 A 1 HETATM 23 C C37 80I . . . C 2 -23.282 -13.719 5.143 1 49.4 ? C37 80I 401 A 1 HETATM 24 C C38 80I . . . C 2 -22.801 -11.32 5.715 1 43.98 ? C38 80I 401 A 1 HETATM 25 N N04 80I . . . C 2 -21.209 -7.781 0.221 1 45.77 ? N04 80I 401 A 1 HETATM 26 N N14 80I . . . C 2 -21.023 -10.79 2.508 1 45.26 ? N14 80I 401 A 1 HETATM 27 N N17 80I . . . C 2 -17.872 -11.491 3.742 1 51.55 ? N17 80I 401 A 1 HETATM 28 N N22 80I . . . C 2 -14.438 -7.517 3.089 1 37.57 ? N22 80I 401 A 1 HETATM 29 O O01 80I . . . C 2 -20.468 -8.595 2.851 1 40.38 ? O01 80I 401 A 1 HETATM 30 O O12 80I . . . C 2 -23.754 -10.296 -2.752 1 61.9 ? O12 80I 401 A 1 HETATM 31 O O25 80I . . . C 2 -15.568 -7 5.036 1 35.84 ? O25 80I 401 A 1 HETATM 32 O O28 80I . . . C 2 -17.332 -13.962 4.627 1 46.38 ? O28 80I 401 A 1 HETATM 33 O O30 80I . . . C 2 -15.608 -14.721 2.848 1 56.21 -1 O30 80I 401 A 1 HETATM 34 O O31 80I . . . C 2 -16.416 -16.364 4.51 1 46.93 -1 O31 80I 401 A 1 HETATM 35 O O32 80I . . . C 2 -14.816 -14.582 5.147 1 46.02 ? O32 80I 401 A 1 HETATM 36 O O33 80I . . . C 2 -15.666 -12.233 6.552 1 34.72 ? O33 80I 401 A 1 HETATM 37 O O34 80I . . . C 2 -19.013 -10.715 5.372 1 45.94 ? O34 80I 401 A 1 HETATM 38 P P29 80I . . . C 2 -16.015 -14.921 4.29 1 53.52 ? P29 80I 401 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 38 #