data_8HVY # _model_server_result.job_id 5Udrx4Cq8NmuzdO8w3NZZA _model_server_result.datetime_utc '2025-06-27 14:22:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hvy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8HVY # _exptl.entry_id 8HVY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 552.514 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.496 _cell.angle_gamma 90 _cell.entry_id 8HVY _cell.length_a 54.687 _cell.length_b 98.559 _cell.length_c 58.858 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HVY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id THR _struct_conn.ptnr1_label_seq_id 188 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id THR _struct_conn.ptnr1_auth_seq_id 190 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C13 _struct_conn.ptnr2_label_comp_id 80I _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 80I _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.435 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H33 N4 O9 P' _chem_comp.formula_weight 552.514 _chem_comp.id 80I _chem_comp.mon_nstd_flag . _chem_comp.name '[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N22 C23 80I sing 1 n n N22 C21 80I sing 2 n n C23 C24 80I sing 3 n n C21 O25 80I doub 4 n n C21 C20 80I sing 5 n n C24 C20 80I sing 6 n n C20 C19 80I sing 7 n n C08 C09 80I doub 8 n y C08 C07 80I sing 9 n y C09 C10 80I sing 10 n y C19 C18 80I sing 11 n n C07 N04 80I sing 12 n y C07 C06 80I doub 13 n y C10 C11 80I doub 14 n y N04 C03 80I sing 15 n y O31 P29 80I doub 16 n n C18 C26 80I sing 17 n n C18 N17 80I sing 18 n n O32 P29 80I sing 19 n n C06 C11 80I sing 20 n y C06 C05 80I sing 21 n y C11 O12 80I sing 22 n n O33 C26 80I doub 23 n n O01 C02 80I doub 24 n n C03 C02 80I sing 25 n n C03 C05 80I doub 26 n y C26 C27 80I sing 27 n n C02 N14 80I sing 28 n n P29 O28 80I sing 29 n n P29 O30 80I sing 30 n n O34 C16 80I doub 31 n n N17 C16 80I sing 32 n n O12 C13 80I sing 33 n n C16 C15 80I sing 34 n n O28 C27 80I sing 35 n n N14 C15 80I sing 36 n n C15 C35 80I sing 37 n n C35 C36 80I sing 38 n n C36 C38 80I sing 39 n n C36 C37 80I sing 40 n n C10 H1 80I sing 41 n n C13 H2 80I sing 42 n n C13 H3 80I sing 43 n n C13 H4 80I sing 44 n n C15 H5 80I sing 45 n n C20 H6 80I sing 46 n n C24 H7 80I sing 47 n n C24 H8 80I sing 48 n n C05 H9 80I sing 49 n n C08 H10 80I sing 50 n n C09 H11 80I sing 51 n n C18 H12 80I sing 52 n n C19 H13 80I sing 53 n n C19 H14 80I sing 54 n n C23 H15 80I sing 55 n n C27 H16 80I sing 56 n n C27 H17 80I sing 57 n n C35 H18 80I sing 58 n n C35 H19 80I sing 59 n n C36 H20 80I sing 60 n n C37 H21 80I sing 61 n n C37 H22 80I sing 62 n n C37 H23 80I sing 63 n n C38 H24 80I sing 64 n n C38 H25 80I sing 65 n n C38 H26 80I sing 66 n n N04 H27 80I sing 67 n n N14 H28 80I sing 68 n n N17 H29 80I sing 69 n n O30 H30 80I sing 70 n n O32 H31 80I sing 71 n n N22 H32 80I sing 72 n n C23 H33 80I sing 73 n n # _atom_sites.entry_id 8HVY _atom_sites.fract_transf_matrix[1][1] 0.018286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005764 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 80I A 1 401 1 80I LIG . D 2 80I B 1 401 2 80I LIG . E 3 HOH A 1 501 35 HOH HOH . E 3 HOH A 2 502 23 HOH HOH . E 3 HOH A 3 503 28 HOH HOH . E 3 HOH A 4 504 48 HOH HOH . E 3 HOH A 5 505 32 HOH HOH . E 3 HOH A 6 506 18 HOH HOH . E 3 HOH A 7 507 42 HOH HOH . E 3 HOH A 8 508 8 HOH HOH . E 3 HOH A 9 509 17 HOH HOH . E 3 HOH A 10 510 22 HOH HOH . E 3 HOH A 11 511 5 HOH HOH . E 3 HOH A 12 512 26 HOH HOH . E 3 HOH A 13 513 33 HOH HOH . E 3 HOH A 14 514 51 HOH HOH . E 3 HOH A 15 515 44 HOH HOH . E 3 HOH A 16 516 15 HOH HOH . E 3 HOH A 17 517 12 HOH HOH . E 3 HOH A 18 518 1 HOH HOH . E 3 HOH A 19 519 55 HOH HOH . E 3 HOH A 20 520 14 HOH HOH . E 3 HOH A 21 521 7 HOH HOH . E 3 HOH A 22 522 47 HOH HOH . E 3 HOH A 23 523 49 HOH HOH . E 3 HOH A 24 524 20 HOH HOH . E 3 HOH A 25 525 36 HOH HOH . E 3 HOH A 26 526 10 HOH HOH . E 3 HOH A 27 527 4 HOH HOH . E 3 HOH A 28 528 37 HOH HOH . F 3 HOH B 1 501 45 HOH HOH . F 3 HOH B 2 502 2 HOH HOH . F 3 HOH B 3 503 13 HOH HOH . F 3 HOH B 4 504 27 HOH HOH . F 3 HOH B 5 505 53 HOH HOH . F 3 HOH B 6 506 3 HOH HOH . F 3 HOH B 7 507 34 HOH HOH . F 3 HOH B 8 508 57 HOH HOH . F 3 HOH B 9 509 54 HOH HOH . F 3 HOH B 10 510 29 HOH HOH . F 3 HOH B 11 511 56 HOH HOH . F 3 HOH B 12 512 52 HOH HOH . F 3 HOH B 13 513 11 HOH HOH . F 3 HOH B 14 514 9 HOH HOH . F 3 HOH B 15 515 21 HOH HOH . F 3 HOH B 16 516 6 HOH HOH . F 3 HOH B 17 517 38 HOH HOH . F 3 HOH B 18 518 40 HOH HOH . F 3 HOH B 19 519 58 HOH HOH . F 3 HOH B 20 520 16 HOH HOH . F 3 HOH B 21 521 19 HOH HOH . F 3 HOH B 22 522 31 HOH HOH . F 3 HOH B 23 523 50 HOH HOH . F 3 HOH B 24 524 25 HOH HOH . F 3 HOH B 25 525 30 HOH HOH . F 3 HOH B 26 526 43 HOH HOH . F 3 HOH B 27 527 46 HOH HOH . F 3 HOH B 28 528 24 HOH HOH . F 3 HOH B 29 529 39 HOH HOH . F 3 HOH B 30 530 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 80I . . . C 2 -23.379 -7.965 -3.573 1 48.63 ? C10 80I 401 A 1 HETATM 2 C C13 80I . . . C 2 -25.198 -10.332 -1.797 1 53.28 ? C13 80I 401 A 1 HETATM 3 C C15 80I . . . C 2 -20.715 -11.238 3.57 1 40.45 ? C15 80I 401 A 1 HETATM 4 C C20 80I . . . C 2 -16.258 -8.964 3.655 1 41.94 ? C20 80I 401 A 1 HETATM 5 C C21 80I . . . C 2 -15.615 -7.746 3.85 1 44.41 ? C21 80I 401 A 1 HETATM 6 C C24 80I . . . C 2 -15.382 -9.736 2.513 1 45.77 ? C24 80I 401 A 1 HETATM 7 C C26 80I . . . C 2 -16.572 -12.26 5.645 1 41.06 ? C26 80I 401 A 1 HETATM 8 C C02 80I . . . C 2 -20.966 -9.475 1.818 1 46.13 ? C02 80I 401 A 1 HETATM 9 C C03 80I . . . C 2 -21.491 -8.998 0.471 1 47.54 ? C03 80I 401 A 1 HETATM 10 C C05 80I . . . C 2 -22.41 -9.666 -0.325 1 47.75 ? C05 80I 401 A 1 HETATM 11 C C06 80I . . . C 2 -22.614 -8.855 -1.459 1 48.45 ? C06 80I 401 A 1 HETATM 12 C C07 80I . . . C 2 -21.809 -7.743 -1.287 1 46.1 ? C07 80I 401 A 1 HETATM 13 C C08 80I . . . C 2 -21.783 -6.728 -2.261 1 47.34 ? C08 80I 401 A 1 HETATM 14 C C09 80I . . . C 2 -22.57 -6.844 -3.403 1 47.9 ? C09 80I 401 A 1 HETATM 15 C C11 80I . . . C 2 -23.417 -8.972 -2.617 1 49.06 ? C11 80I 401 A 1 HETATM 16 C C16 80I . . . C 2 -19.201 -11.356 3.52 1 43.81 ? C16 80I 401 A 1 HETATM 17 C C18 80I . . . C 2 -16.993 -11.14 4.682 1 40.48 ? C18 80I 401 A 1 HETATM 18 C C19 80I . . . C 2 -16.301 -9.792 4.947 1 39.72 ? C19 80I 401 A 1 HETATM 19 C C23 80I . . . C 2 -14.705 -8.763 1.848 1 50.19 ? C23 80I 401 A 1 HETATM 20 C C27 80I . . . C 2 -17.455 -13.497 5.72 1 39.44 ? C27 80I 401 A 1 HETATM 21 C C35 80I . . . C 2 -21.3 -12.591 3.971 1 40.27 ? C35 80I 401 A 1 HETATM 22 C C36 80I . . . C 2 -22.803 -12.486 4.188 1 45.52 ? C36 80I 401 A 1 HETATM 23 C C37 80I . . . C 2 -23.133 -11.493 5.295 1 44.25 ? C37 80I 401 A 1 HETATM 24 C C38 80I . . . C 2 -23.451 -13.847 4.421 1 44.74 ? C38 80I 401 A 1 HETATM 25 N N04 80I . . . C 2 -21.162 -7.864 -0.12 1 44.52 ? N04 80I 401 A 1 HETATM 26 N N14 80I . . . C 2 -21.215 -10.83 2.272 1 41.5 ? N14 80I 401 A 1 HETATM 27 N N17 80I . . . C 2 -18.437 -11.014 4.704 1 37.91 ? N17 80I 401 A 1 HETATM 28 N N22 80I . . . C 2 -14.661 -7.517 2.808 1 41.51 ? N22 80I 401 A 1 HETATM 29 O O01 80I . . . C 2 -20.355 -8.718 2.503 1 43.14 ? O01 80I 401 A 1 HETATM 30 O O12 80I . . . C 2 -24.248 -10.091 -2.822 1 52.28 ? O12 80I 401 A 1 HETATM 31 O O25 80I . . . C 2 -15.84 -7 4.745 1 40.49 ? O25 80I 401 A 1 HETATM 32 O O28 80I . . . C 2 -17.223 -14.103 4.477 1 43.59 ? O28 80I 401 A 1 HETATM 33 O O30 80I . . . C 2 -16.175 -16.46 4.254 1 51.45 -1 O30 80I 401 A 1 HETATM 34 O O31 80I . . . C 2 -14.823 -14.691 5.312 1 52.14 -1 O31 80I 401 A 1 HETATM 35 O O32 80I . . . C 2 -15.257 -14.626 2.881 1 53.46 ? O32 80I 401 A 1 HETATM 36 O O33 80I . . . C 2 -15.512 -12.256 6.17 1 36.03 ? O33 80I 401 A 1 HETATM 37 O O34 80I . . . C 2 -18.656 -11.73 2.536 1 42.43 ? O34 80I 401 A 1 HETATM 38 P P29 80I . . . C 2 -15.838 -14.981 4.231 1 53.58 ? P29 80I 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 38 #