data_8HVZ
#
_model_server_result.job_id            Z63xWvmW4N_8CB13jNb4TQ 
_model_server_result.datetime_utc      '2024-11-24 06:18:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hvz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    8HVZ 
#
_exptl.entry_id    8HVZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              552.514 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.002 
_cell.angle_gamma         90 
_cell.entry_id            8HVZ 
_cell.length_a            55.333 
_cell.length_b            99.15 
_cell.length_c            59.536 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HVZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C24 H33 N4 O9 P' 
_chem_comp.formula_weight    552.514 
_chem_comp.id                80I 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N22 C23 80I sing 1 n n 
N22 C21 80I sing 2 n n 
C23 C24 80I sing 3 n n 
C21 O25 80I doub 4 n n 
C21 C20 80I sing 5 n n 
C24 C20 80I sing 6 n n 
C20 C19 80I sing 7 n n 
C08 C09 80I doub 8 n y 
C08 C07 80I sing 9 n y 
C09 C10 80I sing 10 n y 
C19 C18 80I sing 11 n n 
C07 N04 80I sing 12 n y 
C07 C06 80I doub 13 n y 
C10 C11 80I doub 14 n y 
N04 C03 80I sing 15 n y 
O31 P29 80I doub 16 n n 
C18 C26 80I sing 17 n n 
C18 N17 80I sing 18 n n 
O32 P29 80I sing 19 n n 
C06 C11 80I sing 20 n y 
C06 C05 80I sing 21 n y 
C11 O12 80I sing 22 n n 
O33 C26 80I doub 23 n n 
O01 C02 80I doub 24 n n 
C03 C02 80I sing 25 n n 
C03 C05 80I doub 26 n y 
C26 C27 80I sing 27 n n 
C02 N14 80I sing 28 n n 
P29 O28 80I sing 29 n n 
P29 O30 80I sing 30 n n 
O34 C16 80I doub 31 n n 
N17 C16 80I sing 32 n n 
O12 C13 80I sing 33 n n 
C16 C15 80I sing 34 n n 
O28 C27 80I sing 35 n n 
N14 C15 80I sing 36 n n 
C15 C35 80I sing 37 n n 
C35 C36 80I sing 38 n n 
C36 C38 80I sing 39 n n 
C36 C37 80I sing 40 n n 
C10 H1 80I sing 41 n n 
C13 H2 80I sing 42 n n 
C13 H3 80I sing 43 n n 
C13 H4 80I sing 44 n n 
C15 H5 80I sing 45 n n 
C20 H6 80I sing 46 n n 
C24 H7 80I sing 47 n n 
C24 H8 80I sing 48 n n 
C05 H9 80I sing 49 n n 
C08 H10 80I sing 50 n n 
C09 H11 80I sing 51 n n 
C18 H12 80I sing 52 n n 
C19 H13 80I sing 53 n n 
C19 H14 80I sing 54 n n 
C23 H15 80I sing 55 n n 
C27 H16 80I sing 56 n n 
C27 H17 80I sing 57 n n 
C35 H18 80I sing 58 n n 
C35 H19 80I sing 59 n n 
C36 H20 80I sing 60 n n 
C37 H21 80I sing 61 n n 
C37 H22 80I sing 62 n n 
C37 H23 80I sing 63 n n 
C38 H24 80I sing 64 n n 
C38 H25 80I sing 65 n n 
C38 H26 80I sing 66 n n 
N04 H27 80I sing 67 n n 
N14 H28 80I sing 68 n n 
N17 H29 80I sing 69 n n 
O30 H30 80I sing 70 n n 
O32 H31 80I sing 71 n n 
N22 H32 80I sing 72 n n 
C23 H33 80I sing 73 n n 
#
_atom_sites.entry_id                     8HVZ 
_atom_sites.fract_transf_matrix[1][1]    0.018072 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005873 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010086 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017661 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 80I A 1 401 1 80I LIG . 
D 2 80I B 1 401 2 80I LIG . 
E 3 HOH A 1 501 50 HOH HOH . 
E 3 HOH A 2 502 23 HOH HOH . 
E 3 HOH A 3 503 11 HOH HOH . 
E 3 HOH A 4 504 33 HOH HOH . 
E 3 HOH A 5 505 75 HOH HOH . 
E 3 HOH A 6 506 20 HOH HOH . 
E 3 HOH A 7 507 43 HOH HOH . 
E 3 HOH A 8 508 48 HOH HOH . 
E 3 HOH A 9 509 84 HOH HOH . 
E 3 HOH A 10 510 9 HOH HOH . 
E 3 HOH A 11 511 7 HOH HOH . 
E 3 HOH A 12 512 17 HOH HOH . 
E 3 HOH A 13 513 4 HOH HOH . 
E 3 HOH A 14 514 67 HOH HOH . 
E 3 HOH A 15 515 62 HOH HOH . 
E 3 HOH A 16 516 1 HOH HOH . 
E 3 HOH A 17 517 78 HOH HOH . 
E 3 HOH A 18 518 51 HOH HOH . 
E 3 HOH A 19 519 15 HOH HOH . 
E 3 HOH A 20 520 19 HOH HOH . 
E 3 HOH A 21 521 26 HOH HOH . 
E 3 HOH A 22 522 3 HOH HOH . 
E 3 HOH A 23 523 24 HOH HOH . 
E 3 HOH A 24 524 55 HOH HOH . 
E 3 HOH A 25 525 82 HOH HOH . 
E 3 HOH A 26 526 25 HOH HOH . 
E 3 HOH A 27 527 34 HOH HOH . 
E 3 HOH A 28 528 81 HOH HOH . 
E 3 HOH A 29 529 57 HOH HOH . 
E 3 HOH A 30 530 76 HOH HOH . 
E 3 HOH A 31 531 85 HOH HOH . 
E 3 HOH A 32 532 13 HOH HOH . 
E 3 HOH A 33 533 8 HOH HOH . 
E 3 HOH A 34 534 73 HOH HOH . 
E 3 HOH A 35 535 46 HOH HOH . 
E 3 HOH A 36 536 72 HOH HOH . 
E 3 HOH A 37 537 49 HOH HOH . 
E 3 HOH A 38 538 74 HOH HOH . 
E 3 HOH A 39 539 79 HOH HOH . 
E 3 HOH A 40 540 56 HOH HOH . 
E 3 HOH A 41 541 61 HOH HOH . 
E 3 HOH A 42 542 63 HOH HOH . 
F 3 HOH B 1 501 14 HOH HOH . 
F 3 HOH B 2 502 66 HOH HOH . 
F 3 HOH B 3 503 58 HOH HOH . 
F 3 HOH B 4 504 39 HOH HOH . 
F 3 HOH B 5 505 37 HOH HOH . 
F 3 HOH B 6 506 68 HOH HOH . 
F 3 HOH B 7 507 44 HOH HOH . 
F 3 HOH B 8 508 38 HOH HOH . 
F 3 HOH B 9 509 5 HOH HOH . 
F 3 HOH B 10 510 60 HOH HOH . 
F 3 HOH B 11 511 29 HOH HOH . 
F 3 HOH B 12 512 18 HOH HOH . 
F 3 HOH B 13 513 12 HOH HOH . 
F 3 HOH B 14 514 2 HOH HOH . 
F 3 HOH B 15 515 52 HOH HOH . 
F 3 HOH B 16 516 69 HOH HOH . 
F 3 HOH B 17 517 77 HOH HOH . 
F 3 HOH B 18 518 42 HOH HOH . 
F 3 HOH B 19 519 64 HOH HOH . 
F 3 HOH B 20 520 83 HOH HOH . 
F 3 HOH B 21 521 10 HOH HOH . 
F 3 HOH B 22 522 47 HOH HOH . 
F 3 HOH B 23 523 22 HOH HOH . 
F 3 HOH B 24 524 36 HOH HOH . 
F 3 HOH B 25 525 28 HOH HOH . 
F 3 HOH B 26 526 65 HOH HOH . 
F 3 HOH B 27 527 6 HOH HOH . 
F 3 HOH B 28 528 41 HOH HOH . 
F 3 HOH B 29 529 16 HOH HOH . 
F 3 HOH B 30 530 54 HOH HOH . 
F 3 HOH B 31 531 27 HOH HOH . 
F 3 HOH B 32 532 70 HOH HOH . 
F 3 HOH B 33 533 71 HOH HOH . 
F 3 HOH B 34 534 45 HOH HOH . 
F 3 HOH B 35 535 21 HOH HOH . 
F 3 HOH B 36 536 30 HOH HOH . 
F 3 HOH B 37 537 32 HOH HOH . 
F 3 HOH B 38 538 59 HOH HOH . 
F 3 HOH B 39 539 40 HOH HOH . 
F 3 HOH B 40 540 80 HOH HOH . 
F 3 HOH B 41 541 35 HOH HOH . 
F 3 HOH B 42 542 31 HOH HOH . 
F 3 HOH B 43 543 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 80I . . . D 2 11.818 24.189 25.468 1 29.46 ? C10 80I 401 B 1 
HETATM 2 C C13 80I . . . D 2 13.503 24.667 27.588 1 35.86 ? C13 80I 401 B 1 
HETATM 3 C C15 80I . . . D 2 11.876 16.254 27.42 1 26.89 ? C15 80I 401 B 1 
HETATM 4 C C20 80I . . . D 2 7.243 15.102 26.184 1 24.95 ? C20 80I 401 B 1 
HETATM 5 C C21 80I . . . D 2 6.337 14.922 25.135 1 29.12 ? C21 80I 401 B 1 
HETATM 6 C C24 80I . . . D 2 6.415 15.947 27.317 1 28.89 ? C24 80I 401 B 1 
HETATM 7 C C26 80I . . . D 2 8.935 12.868 28.884 1 33.13 ? C26 80I 401 B 1 
HETATM 8 C C02 80I . . . D 2 11.205 18.207 26.056 1 31.83 ? C02 80I 401 B 1 
HETATM 9 C C03 80I . . . D 2 11.305 19.695 25.82 1 26.96 ? C03 80I 401 B 1 
HETATM 10 C C05 80I . . . D 2 11.988 20.606 26.629 1 32.81 ? C05 80I 401 B 1 
HETATM 11 C C06 80I . . . D 2 11.786 21.849 26.006 1 32.06 ? C06 80I 401 B 1 
HETATM 12 C C07 80I . . . D 2 11.003 21.619 24.885 1 32.55 ? C07 80I 401 B 1 
HETATM 13 C C08 80I . . . D 2 10.626 22.663 24.043 1 30.84 ? C08 80I 401 B 1 
HETATM 14 C C09 80I . . . D 2 11.033 23.953 24.345 1 34.79 ? C09 80I 401 B 1 
HETATM 15 C C11 80I . . . D 2 12.199 23.151 26.307 1 35 ? C11 80I 401 B 1 
HETATM 16 C C16 80I . . . D 2 10.496 15.836 27.919 1 31.26 ? C16 80I 401 B 1 
HETATM 17 C C18 80I . . . D 2 8.715 14.046 27.925 1 31.13 ? C18 80I 401 B 1 
HETATM 18 C C19 80I . . . D 2 7.743 13.768 26.765 1 28.42 ? C19 80I 401 B 1 
HETATM 19 C C23 80I . . . D 2 5.416 16.581 26.638 1 29.08 ? C23 80I 401 B 1 
HETATM 20 C C27 80I . . . D 2 9.929 13.101 30.009 1 35.05 ? C27 80I 401 B 1 
HETATM 21 C C35 80I . . . D 2 12.903 15.922 28.492 1 30.99 ? C35 80I 401 B 1 
HETATM 22 C C36 80I . . . D 2 14.333 16.014 27.97 1 34.5 ? C36 80I 401 B 1 
HETATM 23 C C37 80I . . . D 2 14.59 14.943 26.911 1 35.29 ? C37 80I 401 B 1 
HETATM 24 C C38 80I . . . D 2 15.287 15.865 29.157 1 32.42 ? C38 80I 401 B 1 
HETATM 25 N N04 80I . . . D 2 10.745 20.313 24.814 1 32.07 ? N04 80I 401 B 1 
HETATM 26 N N14 80I . . . D 2 11.943 17.682 27.161 1 28.92 ? N14 80I 401 B 1 
HETATM 27 N N17 80I . . . D 2 10.01 14.543 27.483 1 28.68 ? N17 80I 401 B 1 
HETATM 28 N N22 80I . . . D 2 5.2 15.772 25.303 1 30.96 ? N22 80I 401 B 1 
HETATM 29 O O01 80I . . . D 2 10.537 17.509 25.369 1 29.31 ? O01 80I 401 B 1 
HETATM 30 O O12 80I . . . D 2 12.986 23.367 27.447 1 36.11 ? O12 80I 401 B 1 
HETATM 31 O O25 80I . . . D 2 6.482 14.194 24.209 1 27.59 ? O25 80I 401 B 1 
HETATM 32 O O28 80I . . . D 2 9.305 14.146 30.718 1 36 ? O28 80I 401 B 1 
HETATM 33 O O30 80I . . . D 2 8.922 13.509 33.193 1 45.55 -1 O30 80I 401 B 1 
HETATM 34 O O31 80I . . . D 2 7.335 12.616 31.532 1 42.25 -1 O31 80I 401 B 1 
HETATM 35 O O32 80I . . . D 2 7.274 14.994 32.123 1 48.79 ? O32 80I 401 B 1 
HETATM 36 O O33 80I . . . D 2 8.217 11.942 28.923 1 35.52 ? O33 80I 401 B 1 
HETATM 37 O O34 80I . . . D 2 9.842 16.537 28.632 1 32.77 ? O34 80I 401 B 1 
HETATM 38 P P29 80I . . . D 2 8.185 13.813 31.904 1 52.14 ? P29 80I 401 B 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           38 
#