data_8HW3 # _model_server_result.job_id xIxdYAAHrPaFPr1It9M-yA _model_server_result.datetime_utc '2025-03-05 02:19:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hw3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":902}' # _entry.id 8HW3 # _exptl.entry_id 8HW3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.17 _cell.angle_gamma 90 _cell.entry_id 8HW3 _cell.length_a 204.77 _cell.length_b 100.62 _cell.length_c 106.67 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HW3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,J 1 1 B,D,F,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 AC1 GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C BGC 1 C 1 BGC C 1 BGC 2 n C GLC 2 C 2 GLC C 2 GLC 2 n C AC1 3 C 3 AC1 C 3 AC1 2 n D BGC 1 D 1 BGC D 1 BGC 2 n D GLC 2 D 2 GLC D 2 GLC 2 n D AC1 3 D 3 AC1 D 3 AC1 2 n E BGC 1 E 1 BGC E 1 BGC 2 n E GLC 2 E 2 GLC E 2 GLC 2 n E AC1 3 E 3 AC1 E 3 AC1 2 n F BGC 1 F 1 BGC F 1 BGC 2 n F GLC 2 F 2 GLC F 2 GLC 2 n F AC1 3 F 3 AC1 F 3 AC1 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 BGC . C BGC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale2 C O4 GLC . C GLC 2 1_555 C C1 AC1 . C AC1 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 D O4 BGC . D BGC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale4 D O4 GLC . D GLC 2 1_555 D C1 AC1 . D AC1 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 E O4 BGC . E BGC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 E O4 GLC . E GLC 2 1_555 E C1 AC1 . E AC1 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 F O4 BGC . F BGC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 F O4 GLC . F GLC 2 1_555 F C1 AC1 . F AC1 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? metalc ? metalc1 A O GLU 191 A GLU 215 1_555 G NA NA . A NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc2 A OE2 GLU 191 A GLU 215 1_555 G NA NA . A NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc3 A OD1 ASP 197 A ASP 221 1_555 G NA NA . A NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc4 A O HIS 241 A HIS 265 1_555 G NA NA . A NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc5 A OD1 ASN 697 A ASN 721 1_555 G NA NA . A NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc6 G NA NA . A NA 901 1_555 J O HOH . A HOH 1020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc7 B O GLU 191 B GLU 215 1_555 I NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc8 B OE2 GLU 191 B GLU 215 1_555 I NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc9 B OD2 ASP 197 B ASP 221 1_555 I NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc10 B O HIS 241 B HIS 265 1_555 I NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc11 B OD1 ASN 697 B ASN 721 1_555 I NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc12 I NA NA . B NA 902 1_555 K O HOH . B HOH 1014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8HW3 _atom_sites.fract_transf_matrix[1][1] 0.004884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001603 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NA A 1 901 1 NA NA . H 4 GOL B 1 901 1 GOL GOL . I 3 NA B 1 902 2 NA NA . J 5 HOH A 1 1001 124 HOH HOH . J 5 HOH A 2 1002 47 HOH HOH . J 5 HOH A 3 1003 72 HOH HOH . J 5 HOH A 4 1004 28 HOH HOH . J 5 HOH A 5 1005 83 HOH HOH . J 5 HOH A 6 1006 103 HOH HOH . J 5 HOH A 7 1007 102 HOH HOH . J 5 HOH A 8 1008 6 HOH HOH . J 5 HOH A 9 1009 44 HOH HOH . J 5 HOH A 10 1010 93 HOH HOH . J 5 HOH A 11 1011 116 HOH HOH . J 5 HOH A 12 1012 98 HOH HOH . J 5 HOH A 13 1013 66 HOH HOH . J 5 HOH A 14 1014 15 HOH HOH . J 5 HOH A 15 1015 7 HOH HOH . J 5 HOH A 16 1016 18 HOH HOH . J 5 HOH A 17 1017 95 HOH HOH . J 5 HOH A 18 1018 16 HOH HOH . J 5 HOH A 19 1019 101 HOH HOH . J 5 HOH A 20 1020 117 HOH HOH . J 5 HOH A 21 1021 62 HOH HOH . J 5 HOH A 22 1022 22 HOH HOH . J 5 HOH A 23 1023 45 HOH HOH . J 5 HOH A 24 1024 13 HOH HOH . J 5 HOH A 25 1025 71 HOH HOH . J 5 HOH A 26 1026 106 HOH HOH . J 5 HOH A 27 1027 46 HOH HOH . J 5 HOH A 28 1028 49 HOH HOH . J 5 HOH A 29 1029 30 HOH HOH . J 5 HOH A 30 1030 109 HOH HOH . J 5 HOH A 31 1031 115 HOH HOH . J 5 HOH A 32 1032 110 HOH HOH . J 5 HOH A 33 1033 19 HOH HOH . J 5 HOH A 34 1034 107 HOH HOH . J 5 HOH A 35 1035 14 HOH HOH . J 5 HOH A 36 1036 125 HOH HOH . J 5 HOH A 37 1037 9 HOH HOH . J 5 HOH A 38 1038 12 HOH HOH . J 5 HOH A 39 1039 32 HOH HOH . J 5 HOH A 40 1040 31 HOH HOH . J 5 HOH A 41 1041 90 HOH HOH . J 5 HOH A 42 1042 64 HOH HOH . J 5 HOH A 43 1043 52 HOH HOH . J 5 HOH A 44 1044 34 HOH HOH . J 5 HOH A 45 1045 3 HOH HOH . J 5 HOH A 46 1046 17 HOH HOH . J 5 HOH A 47 1047 4 HOH HOH . J 5 HOH A 48 1048 108 HOH HOH . J 5 HOH A 49 1049 67 HOH HOH . J 5 HOH A 50 1050 87 HOH HOH . J 5 HOH A 51 1051 8 HOH HOH . J 5 HOH A 52 1052 53 HOH HOH . J 5 HOH A 53 1053 123 HOH HOH . J 5 HOH A 54 1054 88 HOH HOH . J 5 HOH A 55 1055 69 HOH HOH . J 5 HOH A 56 1056 70 HOH HOH . J 5 HOH A 57 1057 20 HOH HOH . J 5 HOH A 58 1058 68 HOH HOH . J 5 HOH A 59 1059 94 HOH HOH . J 5 HOH A 60 1060 84 HOH HOH . J 5 HOH A 61 1061 97 HOH HOH . J 5 HOH A 62 1062 96 HOH HOH . J 5 HOH A 63 1063 63 HOH HOH . J 5 HOH A 64 1064 92 HOH HOH . J 5 HOH A 65 1065 21 HOH HOH . J 5 HOH A 66 1066 86 HOH HOH . J 5 HOH A 67 1067 89 HOH HOH . J 5 HOH A 68 1068 61 HOH HOH . K 5 HOH B 1 1001 119 HOH HOH . K 5 HOH B 2 1002 51 HOH HOH . K 5 HOH B 3 1003 40 HOH HOH . K 5 HOH B 4 1004 100 HOH HOH . K 5 HOH B 5 1005 114 HOH HOH . K 5 HOH B 6 1006 76 HOH HOH . K 5 HOH B 7 1007 38 HOH HOH . K 5 HOH B 8 1008 85 HOH HOH . K 5 HOH B 9 1009 79 HOH HOH . K 5 HOH B 10 1010 65 HOH HOH . K 5 HOH B 11 1011 80 HOH HOH . K 5 HOH B 12 1012 27 HOH HOH . K 5 HOH B 13 1013 56 HOH HOH . K 5 HOH B 14 1014 118 HOH HOH . K 5 HOH B 15 1015 10 HOH HOH . K 5 HOH B 16 1016 23 HOH HOH . K 5 HOH B 17 1017 59 HOH HOH . K 5 HOH B 18 1018 43 HOH HOH . K 5 HOH B 19 1019 50 HOH HOH . K 5 HOH B 20 1020 81 HOH HOH . K 5 HOH B 21 1021 39 HOH HOH . K 5 HOH B 22 1022 26 HOH HOH . K 5 HOH B 23 1023 73 HOH HOH . K 5 HOH B 24 1024 25 HOH HOH . K 5 HOH B 25 1025 121 HOH HOH . K 5 HOH B 26 1026 58 HOH HOH . K 5 HOH B 27 1027 111 HOH HOH . K 5 HOH B 28 1028 35 HOH HOH . K 5 HOH B 29 1029 36 HOH HOH . K 5 HOH B 30 1030 1 HOH HOH . K 5 HOH B 31 1031 11 HOH HOH . K 5 HOH B 32 1032 5 HOH HOH . K 5 HOH B 33 1033 33 HOH HOH . K 5 HOH B 34 1034 120 HOH HOH . K 5 HOH B 35 1035 37 HOH HOH . K 5 HOH B 36 1036 24 HOH HOH . K 5 HOH B 37 1037 77 HOH HOH . K 5 HOH B 38 1038 75 HOH HOH . K 5 HOH B 39 1039 78 HOH HOH . K 5 HOH B 40 1040 60 HOH HOH . K 5 HOH B 41 1041 48 HOH HOH . K 5 HOH B 42 1042 29 HOH HOH . K 5 HOH B 43 1043 42 HOH HOH . K 5 HOH B 44 1044 74 HOH HOH . K 5 HOH B 45 1045 2 HOH HOH . K 5 HOH B 46 1046 122 HOH HOH . K 5 HOH B 47 1047 54 HOH HOH . K 5 HOH B 48 1048 112 HOH HOH . K 5 HOH B 49 1049 113 HOH HOH . K 5 HOH B 50 1050 91 HOH HOH . K 5 HOH B 51 1051 99 HOH HOH . K 5 HOH B 52 1052 55 HOH HOH . K 5 HOH B 53 1053 57 HOH HOH . K 5 HOH B 54 1054 104 HOH HOH . K 5 HOH B 55 1055 41 HOH HOH . K 5 HOH B 56 1056 82 HOH HOH . K 5 HOH B 57 1057 105 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x 38.193 _atom_site.Cartn_y -44.692 _atom_site.Cartn_z 27.14 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 902 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #