data_8HWA # _model_server_result.job_id WEKn3ltYwkJiHEbVO3DHRA _model_server_result.datetime_utc '2024-12-22 02:11:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hwa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1001}' # _entry.id 8HWA # _exptl.entry_id 8HWA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 L N N ? 3 N N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 76 A CYS 76 1_555 E SG CYS 385 E CYS 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OG SER 510 A SER 510 1_555 J MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 I O1G ATP . A ATP 1001 1_555 J MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc3 I O2B ATP . A ATP 1001 1_555 J MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc4 B OG SER 510 B SER 510 1_555 M MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc5 C OG SER 510 C SER 510 1_555 O MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc6 N O3G ATP . C ATP 1001 1_555 O MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc7 N O2B ATP . C ATP 1001 1_555 O MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc8 D OG SER 510 D SER 510 1_555 Q MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc9 P O1B ATP . D ATP 1001 1_555 Q MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? metalc ? metalc10 P O2B ATP . D ATP 1001 1_555 Q MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc11 P O1A ATP . D ATP 1001 1_555 Q MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc12 P O3A ATP . D ATP 1001 1_555 Q MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 8HWA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 1001 1001 ATP ATP . J 4 MG A 1 1002 2001 MG MG . K 3 ATP A 1 1003 3001 ATP ATP . L 3 ATP B 1 1001 1001 ATP ATP . M 4 MG B 1 1002 2001 MG MG . N 3 ATP C 1 1001 1001 ATP ATP . O 4 MG C 1 1002 2001 MG MG . P 3 ATP D 1 1001 1001 ATP ATP . Q 4 MG D 1 1002 2001 MG MG . R 5 ADP E 1 1001 1001 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . P 3 152.53 207.044 152.511 1 73.27 ? PG ATP 1001 D 1 HETATM 2 O O1G ATP . . . P 3 151.946 206.353 151.327 1 73.27 ? O1G ATP 1001 D 1 HETATM 3 O O2G ATP . . . P 3 152.872 208.513 152.259 1 73.27 ? O2G ATP 1001 D 1 HETATM 4 O O3G ATP . . . P 3 153.756 206.334 153.091 1 73.27 ? O3G ATP 1001 D 1 HETATM 5 P PB ATP . . . P 3 150.686 206.08 154.65 1 73.27 ? PB ATP 1001 D 1 HETATM 6 O O1B ATP . . . P 3 149.893 205.114 153.868 1 73.27 ? O1B ATP 1001 D 1 HETATM 7 O O2B ATP . . . P 3 151.689 205.479 155.632 1 73.27 ? O2B ATP 1001 D 1 HETATM 8 O O3B ATP . . . P 3 151.482 207.077 153.712 1 73.27 ? O3B ATP 1001 D 1 HETATM 9 P PA ATP . . . P 3 148.216 207.169 155.835 1 73.27 ? PA ATP 1001 D 1 HETATM 10 O O1A ATP . . . P 3 147.796 206.053 156.705 1 73.27 ? O1A ATP 1001 D 1 HETATM 11 O O2A ATP . . . P 3 147.465 207.273 154.51 1 73.27 ? O2A ATP 1001 D 1 HETATM 12 O O3A ATP . . . P 3 149.753 207.073 155.472 1 73.27 ? O3A ATP 1001 D 1 HETATM 13 O O5' ATP . . . P 3 148.071 208.553 156.58 1 73.27 ? O5' ATP 1001 D 1 HETATM 14 C C5' ATP . . . P 3 146.848 209.315 156.499 1 73.27 ? C5' ATP 1001 D 1 HETATM 15 C C4' ATP . . . P 3 146.868 210.438 157.504 1 73.27 ? C4' ATP 1001 D 1 HETATM 16 O O4' ATP . . . P 3 145.533 210.965 157.654 1 73.27 ? O4' ATP 1001 D 1 HETATM 17 C C3' ATP . . . P 3 147.293 210.049 158.914 1 73.27 ? C3' ATP 1001 D 1 HETATM 18 O O3' ATP . . . P 3 147.83 211.166 159.611 1 73.27 ? O3' ATP 1001 D 1 HETATM 19 C C2' ATP . . . P 3 145.976 209.574 159.532 1 73.27 ? C2' ATP 1001 D 1 HETATM 20 O O2' ATP . . . P 3 145.948 209.779 160.938 1 73.27 ? O2' ATP 1001 D 1 HETATM 21 C C1' ATP . . . P 3 144.954 210.499 158.862 1 73.27 ? C1' ATP 1001 D 1 HETATM 22 N N9 ATP . . . P 3 143.691 209.843 158.545 1 73.27 ? N9 ATP 1001 D 1 HETATM 23 C C8 ATP . . . P 3 143.515 208.711 157.793 1 73.27 ? C8 ATP 1001 D 1 HETATM 24 N N7 ATP . . . P 3 142.265 208.338 157.671 1 73.27 ? N7 ATP 1001 D 1 HETATM 25 C C5 ATP . . . P 3 141.567 209.291 158.396 1 73.27 ? C5 ATP 1001 D 1 HETATM 26 C C6 ATP . . . P 3 140.195 209.465 158.663 1 73.27 ? C6 ATP 1001 D 1 HETATM 27 N N6 ATP . . . P 3 139.239 208.651 158.206 1 73.27 ? N6 ATP 1001 D 1 HETATM 28 N N1 ATP . . . P 3 139.832 210.522 159.422 1 73.27 ? N1 ATP 1001 D 1 HETATM 29 C C2 ATP . . . P 3 140.782 211.341 159.88 1 73.27 ? C2 ATP 1001 D 1 HETATM 30 N N3 ATP . . . P 3 142.102 211.277 159.696 1 73.27 ? N3 ATP 1001 D 1 HETATM 31 C C4 ATP . . . P 3 142.433 210.224 158.942 1 73.27 ? C4 ATP 1001 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #