data_8HX4 # _model_server_result.job_id B-GXQW6wV2iWrKn4IGVC9Q _model_server_result.datetime_utc '2024-12-25 19:19:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 8HX4 # _exptl.entry_id 8HX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.32 _cell.angle_gamma 90 _cell.entry_id 8HX4 _cell.length_a 76.645 _cell.length_b 83.528 _cell.length_c 62.002 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -22.214777 0 121.997933 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 373 A CYS 401 1_555 A SG CYS 388 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A NE2 HIS 198 A HIS 226 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 A NE2 HIS 280 A HIS 308 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc3 A OE1 GLU 366 A GLU 394 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc4 B CO CO . A CO 501 1_555 C O17 NQX . A NQX 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 B CO CO . A CO 501 1_555 C O24 NQX . A NQX 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc6 B CO CO . A CO 501 1_555 E O HOH . A HOH 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 8HX4 _atom_sites.fract_transf_matrix[1][1] 0.013047 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002376 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 501 1 CO CO . C 3 NQX A 1 502 501 NQX LIG . D 4 MPD A 1 503 601 MPD LAN . E 5 HOH A 1 601 180 HOH HOH . E 5 HOH A 2 602 110 HOH HOH . E 5 HOH A 3 603 121 HOH HOH . E 5 HOH A 4 604 220 HOH HOH . E 5 HOH A 5 605 102 HOH HOH . E 5 HOH A 6 606 72 HOH HOH . E 5 HOH A 7 607 227 HOH HOH . E 5 HOH A 8 608 83 HOH HOH . E 5 HOH A 9 609 251 HOH HOH . E 5 HOH A 10 610 63 HOH HOH . E 5 HOH A 11 611 29 HOH HOH . E 5 HOH A 12 612 209 HOH HOH . E 5 HOH A 13 613 154 HOH HOH . E 5 HOH A 14 614 173 HOH HOH . E 5 HOH A 15 615 135 HOH HOH . E 5 HOH A 16 616 167 HOH HOH . E 5 HOH A 17 617 34 HOH HOH . E 5 HOH A 18 618 146 HOH HOH . E 5 HOH A 19 619 153 HOH HOH . E 5 HOH A 20 620 156 HOH HOH . E 5 HOH A 21 621 100 HOH HOH . E 5 HOH A 22 622 123 HOH HOH . E 5 HOH A 23 623 58 HOH HOH . E 5 HOH A 24 624 15 HOH HOH . E 5 HOH A 25 625 37 HOH HOH . E 5 HOH A 26 626 39 HOH HOH . E 5 HOH A 27 627 190 HOH HOH . E 5 HOH A 28 628 244 HOH HOH . E 5 HOH A 29 629 116 HOH HOH . E 5 HOH A 30 630 109 HOH HOH . E 5 HOH A 31 631 210 HOH HOH . E 5 HOH A 32 632 17 HOH HOH . E 5 HOH A 33 633 86 HOH HOH . E 5 HOH A 34 634 31 HOH HOH . E 5 HOH A 35 635 133 HOH HOH . E 5 HOH A 36 636 111 HOH HOH . E 5 HOH A 37 637 69 HOH HOH . E 5 HOH A 38 638 246 HOH HOH . E 5 HOH A 39 639 164 HOH HOH . E 5 HOH A 40 640 195 HOH HOH . E 5 HOH A 41 641 65 HOH HOH . E 5 HOH A 42 642 142 HOH HOH . E 5 HOH A 43 643 30 HOH HOH . E 5 HOH A 44 644 125 HOH HOH . E 5 HOH A 45 645 4 HOH HOH . E 5 HOH A 46 646 89 HOH HOH . E 5 HOH A 47 647 84 HOH HOH . E 5 HOH A 48 648 52 HOH HOH . E 5 HOH A 49 649 13 HOH HOH . E 5 HOH A 50 650 76 HOH HOH . E 5 HOH A 51 651 149 HOH HOH . E 5 HOH A 52 652 45 HOH HOH . E 5 HOH A 53 653 187 HOH HOH . E 5 HOH A 54 654 112 HOH HOH . E 5 HOH A 55 655 85 HOH HOH . E 5 HOH A 56 656 101 HOH HOH . E 5 HOH A 57 657 35 HOH HOH . E 5 HOH A 58 658 87 HOH HOH . E 5 HOH A 59 659 24 HOH HOH . E 5 HOH A 60 660 16 HOH HOH . E 5 HOH A 61 661 150 HOH HOH . E 5 HOH A 62 662 8 HOH HOH . E 5 HOH A 63 663 3 HOH HOH . E 5 HOH A 64 664 40 HOH HOH . E 5 HOH A 65 665 36 HOH HOH . E 5 HOH A 66 666 81 HOH HOH . E 5 HOH A 67 667 231 HOH HOH . E 5 HOH A 68 668 115 HOH HOH . E 5 HOH A 69 669 18 HOH HOH . E 5 HOH A 70 670 27 HOH HOH . E 5 HOH A 71 671 152 HOH HOH . E 5 HOH A 72 672 6 HOH HOH . E 5 HOH A 73 674 80 HOH HOH . E 5 HOH A 74 675 75 HOH HOH . E 5 HOH A 75 676 1 HOH HOH . E 5 HOH A 76 677 94 HOH HOH . E 5 HOH A 77 678 12 HOH HOH . E 5 HOH A 78 679 54 HOH HOH . E 5 HOH A 79 680 57 HOH HOH . E 5 HOH A 80 681 143 HOH HOH . E 5 HOH A 81 682 21 HOH HOH . E 5 HOH A 82 683 114 HOH HOH . E 5 HOH A 83 684 134 HOH HOH . E 5 HOH A 84 685 166 HOH HOH . E 5 HOH A 85 686 171 HOH HOH . E 5 HOH A 86 687 139 HOH HOH . E 5 HOH A 87 688 53 HOH HOH . E 5 HOH A 88 689 140 HOH HOH . E 5 HOH A 89 690 49 HOH HOH . E 5 HOH A 90 691 26 HOH HOH . E 5 HOH A 91 692 33 HOH HOH . E 5 HOH A 92 693 71 HOH HOH . E 5 HOH A 93 694 119 HOH HOH . E 5 HOH A 94 695 248 HOH HOH . E 5 HOH A 95 696 68 HOH HOH . E 5 HOH A 96 697 28 HOH HOH . E 5 HOH A 97 698 78 HOH HOH . E 5 HOH A 98 699 20 HOH HOH . E 5 HOH A 99 700 73 HOH HOH . E 5 HOH A 100 701 122 HOH HOH . E 5 HOH A 101 702 233 HOH HOH . E 5 HOH A 102 703 141 HOH HOH . E 5 HOH A 103 704 11 HOH HOH . E 5 HOH A 104 705 55 HOH HOH . E 5 HOH A 105 706 61 HOH HOH . E 5 HOH A 106 707 99 HOH HOH . E 5 HOH A 107 708 211 HOH HOH . E 5 HOH A 108 709 92 HOH HOH . E 5 HOH A 109 710 144 HOH HOH . E 5 HOH A 110 711 128 HOH HOH . E 5 HOH A 111 712 66 HOH HOH . E 5 HOH A 112 713 60 HOH HOH . E 5 HOH A 113 714 118 HOH HOH . E 5 HOH A 114 715 199 HOH HOH . E 5 HOH A 115 716 137 HOH HOH . E 5 HOH A 116 717 5 HOH HOH . E 5 HOH A 117 718 46 HOH HOH . E 5 HOH A 118 719 98 HOH HOH . E 5 HOH A 119 720 77 HOH HOH . E 5 HOH A 120 721 67 HOH HOH . E 5 HOH A 121 722 191 HOH HOH . E 5 HOH A 122 723 62 HOH HOH . E 5 HOH A 123 724 117 HOH HOH . E 5 HOH A 124 725 2 HOH HOH . E 5 HOH A 125 726 44 HOH HOH . E 5 HOH A 126 727 129 HOH HOH . E 5 HOH A 127 728 19 HOH HOH . E 5 HOH A 128 729 230 HOH HOH . E 5 HOH A 129 730 234 HOH HOH . E 5 HOH A 130 731 10 HOH HOH . E 5 HOH A 131 732 221 HOH HOH . E 5 HOH A 132 733 203 HOH HOH . E 5 HOH A 133 734 200 HOH HOH . E 5 HOH A 134 735 38 HOH HOH . E 5 HOH A 135 736 130 HOH HOH . E 5 HOH A 136 737 108 HOH HOH . E 5 HOH A 137 738 70 HOH HOH . E 5 HOH A 138 739 50 HOH HOH . E 5 HOH A 139 740 170 HOH HOH . E 5 HOH A 140 741 91 HOH HOH . E 5 HOH A 141 742 172 HOH HOH . E 5 HOH A 142 743 56 HOH HOH . E 5 HOH A 143 744 74 HOH HOH . E 5 HOH A 144 745 41 HOH HOH . E 5 HOH A 145 746 104 HOH HOH . E 5 HOH A 146 747 138 HOH HOH . E 5 HOH A 147 748 107 HOH HOH . E 5 HOH A 148 749 162 HOH HOH . E 5 HOH A 149 750 103 HOH HOH . E 5 HOH A 150 751 22 HOH HOH . E 5 HOH A 151 752 88 HOH HOH . E 5 HOH A 152 753 148 HOH HOH . E 5 HOH A 153 754 217 HOH HOH . E 5 HOH A 154 755 131 HOH HOH . E 5 HOH A 155 756 218 HOH HOH . E 5 HOH A 156 757 82 HOH HOH . E 5 HOH A 157 758 124 HOH HOH . E 5 HOH A 158 759 177 HOH HOH . E 5 HOH A 159 760 249 HOH HOH . E 5 HOH A 160 761 64 HOH HOH . E 5 HOH A 161 762 105 HOH HOH . E 5 HOH A 162 763 179 HOH HOH . E 5 HOH A 163 764 213 HOH HOH . E 5 HOH A 164 765 96 HOH HOH . E 5 HOH A 165 766 25 HOH HOH . E 5 HOH A 166 767 242 HOH HOH . E 5 HOH A 167 768 176 HOH HOH . E 5 HOH A 168 769 14 HOH HOH . E 5 HOH A 169 770 47 HOH HOH . E 5 HOH A 170 771 7 HOH HOH . E 5 HOH A 171 772 132 HOH HOH . E 5 HOH A 172 773 215 HOH HOH . E 5 HOH A 173 774 95 HOH HOH . E 5 HOH A 174 775 240 HOH HOH . E 5 HOH A 175 776 157 HOH HOH . E 5 HOH A 176 777 127 HOH HOH . E 5 HOH A 177 778 23 HOH HOH . E 5 HOH A 178 779 206 HOH HOH . E 5 HOH A 179 780 106 HOH HOH . E 5 HOH A 180 781 32 HOH HOH . E 5 HOH A 181 782 158 HOH HOH . E 5 HOH A 182 783 178 HOH HOH . E 5 HOH A 183 784 9 HOH HOH . E 5 HOH A 184 785 126 HOH HOH . E 5 HOH A 185 786 228 HOH HOH . E 5 HOH A 186 787 145 HOH HOH . E 5 HOH A 187 788 42 HOH HOH . E 5 HOH A 188 789 241 HOH HOH . E 5 HOH A 189 790 245 HOH HOH . E 5 HOH A 190 791 163 HOH HOH . E 5 HOH A 191 792 97 HOH HOH . E 5 HOH A 192 793 196 HOH HOH . E 5 HOH A 193 794 43 HOH HOH . E 5 HOH A 194 795 193 HOH HOH . E 5 HOH A 195 796 155 HOH HOH . E 5 HOH A 196 797 186 HOH HOH . E 5 HOH A 197 798 159 HOH HOH . E 5 HOH A 198 799 188 HOH HOH . E 5 HOH A 199 800 113 HOH HOH . E 5 HOH A 200 801 48 HOH HOH . E 5 HOH A 201 802 120 HOH HOH . E 5 HOH A 202 803 184 HOH HOH . E 5 HOH A 203 804 225 HOH HOH . E 5 HOH A 204 805 208 HOH HOH . E 5 HOH A 205 806 169 HOH HOH . E 5 HOH A 206 807 207 HOH HOH . E 5 HOH A 207 808 212 HOH HOH . E 5 HOH A 208 809 90 HOH HOH . E 5 HOH A 209 810 222 HOH HOH . E 5 HOH A 210 811 160 HOH HOH . E 5 HOH A 211 812 198 HOH HOH . E 5 HOH A 212 813 236 HOH HOH . E 5 HOH A 213 814 197 HOH HOH . E 5 HOH A 214 815 214 HOH HOH . E 5 HOH A 215 816 219 HOH HOH . E 5 HOH A 216 817 223 HOH HOH . E 5 HOH A 217 818 229 HOH HOH . E 5 HOH A 218 819 216 HOH HOH . E 5 HOH A 219 820 182 HOH HOH . E 5 HOH A 220 821 183 HOH HOH . E 5 HOH A 221 822 226 HOH HOH . E 5 HOH A 222 823 232 HOH HOH . E 5 HOH A 223 824 151 HOH HOH . E 5 HOH A 224 825 185 HOH HOH . E 5 HOH A 225 826 252 HOH HOH . E 5 HOH A 226 827 202 HOH HOH . E 5 HOH A 227 828 247 HOH HOH . E 5 HOH A 228 829 147 HOH HOH . E 5 HOH A 229 830 165 HOH HOH . E 5 HOH A 230 831 204 HOH HOH . E 5 HOH A 231 832 93 HOH HOH . E 5 HOH A 232 833 201 HOH HOH . E 5 HOH A 233 834 235 HOH HOH . E 5 HOH A 234 835 161 HOH HOH . E 5 HOH A 235 836 194 HOH HOH . E 5 HOH A 236 837 136 HOH HOH . E 5 HOH A 237 838 174 HOH HOH . E 5 HOH A 238 839 250 HOH HOH . E 5 HOH A 239 840 237 HOH HOH . E 5 HOH A 240 841 168 HOH HOH . E 5 HOH A 241 842 175 HOH HOH . E 5 HOH A 242 843 189 HOH HOH . E 5 HOH A 243 844 59 HOH HOH . E 5 HOH A 244 845 192 HOH HOH . E 5 HOH A 245 846 238 HOH HOH . E 5 HOH A 246 847 79 HOH HOH . E 5 HOH A 247 848 205 HOH HOH . E 5 HOH A 248 849 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 4 -7.301 -5.797 79.306 1 33.82 ? C1 MPD 503 A 1 HETATM 2 C C2 MPD . . . D 4 -6.604 -5.35 80.591 1 39.76 ? C2 MPD 503 A 1 HETATM 3 O O2 MPD . . . D 4 -5.656 -6.323 80.946 1 42.84 ? O2 MPD 503 A 1 HETATM 4 C CM MPD . . . D 4 -7.618 -5.223 81.722 1 44.79 ? CM MPD 503 A 1 HETATM 5 C C3 MPD . . . D 4 -5.914 -3.998 80.386 1 39.26 ? C3 MPD 503 A 1 HETATM 6 C C4 MPD . . . D 4 -5.068 -3.63 81.604 1 38.25 ? C4 MPD 503 A 1 HETATM 7 O O4 MPD . . . D 4 -4.344 -4.742 82.052 1 45.54 ? O4 MPD 503 A 1 HETATM 8 C C5 MPD . . . D 4 -4.089 -2.524 81.245 1 34.46 ? C5 MPD 503 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #